LOCUS       XM_006239026            5439 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EYA transcriptional coactivator and
            phosphatase 3 (Eya3), transcript variant X5, mRNA.
ACCESSION   XM_006239026
VERSION     XM_006239026.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006239026.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006239026.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5439
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5439
                     /gene="Eya3"
                     /note="EYA transcriptional coactivator and phosphatase 3;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 44 ESTs, 4 long SRA reads, 26 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 65 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:313027"
                     /db_xref="RGD:1309932"
     CDS             284..2002
                     /gene="Eya3"
                     /codon_start=1
                     /product="eyes absent homolog 3 isoform X3"
                     /protein_id="XP_006239088.1"
                     /db_xref="GeneID:313027"
                     /db_xref="RGD:1309932"
                     /translation="MEEEQDLPERPVKKAKMQEPGEQTLSQVNNPDTSDQKPETASLA
                     SNLSMSEEIMTCTDYIPRSSNDYTSQMYSAKPYAHILSVPVSETTYPGQTQYQTLQQS
                     QPYAVYPQATQTYGLPPFGALWPGMKPESGLIQTPSPSQHSVLTCTTGLTTSQPSPAH
                     YSYPIPASSTNASLISTSSAIANIPAAAVASISNQDYPTYTILGQNQYQACYPSSSFG
                     VTGQTNSDTENTALAATTYQTEKPGAMGPAPATQRLPSDSSTSPPLSQTTPNKDADDQ
                     ARKNMTVKNRGKRKADASSSQDSELERVFLWDLDETIIIFHSLLTGSYAQKYGKDPTV
                     VIGSGLTMEEMIFEVADTHLFFNDLEECDQVHVEDVASDDNGQDLSNYSFSTDGFSGS
                     GGSGSHGSSVGVQGGVDWMRKLAFRYRKVREIYDKHKSNVGGLLSPQRKEALQRLRAE
                     IEVLTDSWLGTALKSLLLIQSRKNCVNVLITTTQLVPALAKVLLYGLGEIFPIENIYS
                     ATKIGKESCFERIVSRFGKKVTYVVIGDGRDEEIAAKQHNMPFWRITNHGDLVSLHQA
                     LELDFL"
ORIGIN      
        1 acttccggtt cctagggatg cgcatccggg tcacgctaac gccgcggttt ccgccactct
       61 gttggtgcca gagtgggtcc gaagtggtcc catgttgtgc tttggagtat ctgcagccgt
      121 ctggtgagtc tccgccgcgg ccagggtgtc agcacggtgg ctcgggtgca gccttcaggg
      181 ccccagctga agagttcctc cccggtcgta ctggacagtt tgtgaagacc gcagagactt
      241 gcagtccagt cacataagtg tgtgtaaaga gacagcggtc ctcatggaag aagagcaaga
      301 cctaccagag cgaccggtga aaaaggccaa gatgcaggaa ccaggagaac aaactttaag
      361 tcaagtaaac aacccagaca ccagtgatca gaagcctgag accgccagcc ttgcgtcaaa
      421 ccttagcatg tcagaggaaa ttatgacatg caccgattac atccctcgct catccaatga
      481 ttatacctca caaatgtatt ctgcaaaacc ttatgcacac atcctctcgg ttcctgtttc
      541 ggaaaccact tatcctgggc agactcagta ccagacactg cagcagtctc aaccctacgc
      601 tgtctaccct caggcaaccc aaacttatgg actacctcct ttcggtgcac tgtggccagg
      661 tatgaaacct gaaagtggtt taattcagac tccatctcca agtcaacaca gtgttcttac
      721 ctgcactaca ggcttaacca caagccagcc aagcccagca cattattctt accccattcc
      781 agcttcaagc acaaatgcca gcctgatatc cacttcatct gcaattgcca atattccagc
      841 agcagccgtg gccagcatct caaaccagga ctatcccacc tatactattc ttggacagaa
      901 tcagtaccag gcctgctacc ccagttccag ctttggagtc acaggtcaga ctaacagtga
      961 tactgagaat acagcattag cagctacaac gtaccagacg gagaagcctg gtgctatggg
     1021 acctgcacca gccacacaga ggcttccttc cgactcgtcc acaagcccac ctttgtccca
     1081 gacaacacca aataaagatg ctgatgatca ggccaggaaa aacatgactg tcaagaaccg
     1141 aggcaagagg aaagctgacg ccagctcttc ccaggacagc gaattagaac gggtatttct
     1201 ctgggacttg gatgaaacca tcatcatatt tcattccctt cttaccggat cctatgctca
     1261 gaagtatgga aaggacccaa cagtcgtaat tggctcaggt ttaacaatgg aagaaatgat
     1321 ttttgaagtg gctgatacac atctattttt caatgactta gaagagtgtg accaggtgca
     1381 tgtggaagat gtggcttctg atgacaatgg ccaggatttg agcaactaca gtttctcaac
     1441 agatggtttc agtggttcag gaggcagcgg gagccacgga tcctctgtgg gagttcaggg
     1501 aggtgtggac tggatgagga aactggcctt tcgctaccga aaagtgaggg aaatctatga
     1561 taagcataaa agcaacgttg gtggccttct cagcccccag aggaaggagg ctctgcagcg
     1621 gctcagagca gagatcgaag tgctgacgga ctcctggcta ggaaccgcgc tgaagtcctt
     1681 gcttctcatc cagtctcgaa agaattgtgt gaatgttctg atcactacca cccagttggt
     1741 tccagccctg gccaaggttc tcctgtatgg actaggagaa atatttccta ttgagaacat
     1801 ctacagtgct accaaaatcg gtaaggagag ctgctttgag agaatcgttt cgagatttgg
     1861 gaaaaaagtc acatatgtag taattggaga tggacgagat gaagaaattg cagccaagca
     1921 gcacaacatg cccttctgga ggatcacaaa ccatggagat ctggtgtccc tgcaccaggc
     1981 tttagagctc gacttcctct aagaactgga atgtgggacc ttccttcctt gtgagcttct
     2041 ttttacctcc gacaggagcc agaagccaga accctctgag ccccttctct cctgtctgtc
     2101 tctccatgtc tcagcgcccc tccccctctc ctgctctctc tccatggaat gctggcgagc
     2161 acacaatcag aaccaacagc tgcagcccac gtccactgta cagcaggagg cgcctggata
     2221 aagctgcaga ccggctgcag ccactgtgct ttaatttttc agtttccttt gggaaaggaa
     2281 gaacaaggaa agctgatgct cagggcacag ctgtgctcac acggacagac tgggagctgc
     2341 tcctgagcgt ggggatggaa cgtgcgtccc cttgagatct tctgttctct tagtgtagac
     2401 tgtctcccag tgatgggtat gttgttttta taggtgaggg tctggtctct caagcagcct
     2461 tccccacttc tctatgaaga aagcagtgtg taaagtttcc gtgacagtag taatggaaat
     2521 atctaaaata cctccgtgac aggacctctt ctggacagga ccgaggctcc agtgctctgc
     2581 tctctagcga ggctccttgc catctacagg gccctggtca cttactttag actttggcat
     2641 ctcccatctt gtaagcctcg gtctccttgg caatcctact tcacctgtaa gcaaatggca
     2701 caaccctgga aacaacttcc acagacaata aatctaagcc tttagcttgt aattcagaag
     2761 ctctgtccca ggaagctacc ctgcaaactg gagagaaggg gcttggactt cttaggaatt
     2821 ccatccttag ttcctgaggt aagacttcac cccgtgcacc tgcagatgct tcttctgcgg
     2881 tcagcttagt tgtcagatgc tgggcacact tctgccctca caaccgcccc tctccatgca
     2941 gctctggcca gcccctaccc actccattca agtcagaaag gccaggggcg ggctctagct
     3001 gcttccttca cctgcacttg catgcggtga tcccaccttg tatttacaca gatctgtgcc
     3061 taggagtgga gagcagagaa ctagaatcaa aacccagttt cacatgaaat atcccactgc
     3121 tcaaattcca tgctgaagtg ggaaacccga ccagaaagac tttcttgact taaacacttg
     3181 aaaatagaat cctgagctta ggtgtaagag cacttctcaa gcctgctccc ctgcccctgc
     3241 accctggaca gttaggaggg gaactggtcc gaagtcccag ccctcaagcc cagctgtgtt
     3301 ttttggtttt attttggttt ttgtttgggt attttgtttt ggtttgattt agtttggttt
     3361 tgttttttaa ggcactatcc cttcaggacc aatgtcggtg cctgcttaat tgggttaaac
     3421 ttccctgaag ttgagaatgt gcagccttgg tcttcagggg gtcttgaacc aacccctagc
     3481 tacaatcact gtccccaaag atactgcagc ccagaggcaa agttcctctt catgccaggc
     3541 taccagacag tggcagaaag gctgacacac catcttcaga gctgttggac acttctgagt
     3601 gcttctgaga ccagcagttg aggaaggagc tcaggaggcg aggttggtgt cttggccacg
     3661 cctttggctt tgttttgagg tatggggttg gagtaaggag ctggagtcta agccagacct
     3721 tccgaagctg tatttggcac cactatccta gtcctggcca tccgtgcttc ctggtccaat
     3781 agagaaaact ccagggtaag ttttacttta agtctccaac cctccccccg ttgccagtgt
     3841 agtttcttgt cctggacaat ggccacctat tggtgctgtg cttcaggctt accagactgc
     3901 caagtggtga cacacccctc tgcacacagg taccaccaca aacccttcag gggagactct
     3961 gttcttagaa cagggaatcc ctttcctctt gccctgactg gagtggcaag gaggtgttct
     4021 gagctgagtg gctgttccag caccagcagc cactctgaca gggcagacag agcaggagtg
     4081 cattggtgtc tctagggact gctggccttt gagctgctga ccttccctcc ctcccataga
     4141 ggcttgggaa ggaaaatgag cgggcagcat taagagctgc tagtaacaga agcaggcttg
     4201 gtggaggata gcgcctgcag cctgtgcaga ggtccaaggt ttgagtgccc acaggactcc
     4261 tcacgacctc tcactgcagc tccagagggt ttggtgccct cctttggcct cttcaggcac
     4321 caagcactta catgtaagaa agcactcaag tatacaataa aatttctttt aatattaaaa
     4381 gctgttggag gttagacctg aaggaaactg ggtcctttca tcaacatcag aaggcagtcc
     4441 ttaccggaag gaccccttga agaaattagc tggtgagtcc tttccctgcc ggatcctgtg
     4501 ttctggaaga ttagtttgga catctcatgg tgacagctag ttctaggaga gtctgtggag
     4561 ttgcaggaag gtcctgggat acaaggtggc ttgacttcga atgtaacagt gactgtgcct
     4621 tagcatcacc ctgtccagtg cccctggggc agctggtgat gtccgtccga gagagtggat
     4681 acctgctcca cagtttaggt gcctatttgg gcttttgatt tgggggtgtt ctcttctctg
     4741 ctagttgggt gtcagagcta gtgtcccaag agacttggca cagctggcac agcttgtctt
     4801 atgtttgccc aaactcagcc ttcacagctc caagtagaat ctgattggca aactgcaact
     4861 ggaagcccgc ggcgcttcta gaccctgctt tgaatgggcg tcacacgacc gacaggagca
     4921 ccaggcaaag ccgggtgctg tcctggaaga gtacaggcta gcctccaagt gccaagcttg
     4981 ggcctcattg ttcatcttcc ccaggttgta gctgagggcc cctcgagtaa gcttgtgctc
     5041 cttgctgctc acctggtcag cagctagaat gacccagttc actggagacg ctaagttgga
     5101 attctgagct tcccaaatat cttaaccaca agagggaaaa ctccgcttgt accccaggct
     5161 ttccggggcc gcttgccctc ctcttccgtg agtggattct agtgagcatg gcccctggct
     5221 gcctccttac tgagcagaac cctcccagtt aaggaccatt tctacttgga tcaccactct
     5281 ccctctggac tctgcctcta gcagggaaag gcaacagttg ggttggatgt atttatgtga
     5341 ctgcgggcat ttgtggctat agagtccttg accataatgt tatatgtaat gggaactatc
     5401 ttataaactt gaaaaaataa agtttttatt ttctataca
//
