LOCUS       XM_039110907            4052 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EYA transcriptional coactivator and
            phosphatase 1 (Eya1), transcript variant X3, mRNA.
ACCESSION   XM_039110907
VERSION     XM_039110907.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039110907.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4052
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4052
                     /gene="Eya1"
                     /note="EYA transcriptional coactivator and phosphatase 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 10 ESTs, 3 long SRA reads, 12 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:502935"
                     /db_xref="RGD:1584849"
     CDS             120..2081
                     /gene="Eya1"
                     /codon_start=1
                     /product="eyes absent homolog 1 isoform X3"
                     /protein_id="XP_038966835.1"
                     /db_xref="GeneID:502935"
                     /db_xref="RGD:1584849"
                     /translation="MKHLIICSTRESPDEFALRGLCLVQIGKARKVAVTNEEALNRSA
                     RLRKVQTSHTSSDVALSSSCRSMEMQDLTSPHSRLSGSSESPSGPKLDSSHINSTSMT
                     PNGTEVKTEPMSSSEIASTAADGSLDSFSGSALGSSSFSPRPAHPFSPPQIYPSNRPY
                     PHILPTPSSQTMAAYGQTQFTTGMQQATAYATYPQPGQHYGISSYGIKTEGGLSQSQS
                     PGQTGFLSYGTSFGTPQPGQAPYSYQMQGSSFTTSSGLYTGNNSLTNSSGFNSSQQDY
                     PSYPGFGQGQYAQYYNSSPYPAHYMTSSNTSPTTPSTNATYQLQEPPSGVTSQAVTDP
                     TAEYSTIHSPSTPIKESDSDRLRRGSDGKSRGRGRRNNNPSPPPDSDLERVFIWDLDE
                     TIIVFHSLLTGSYANRYGRDPPTSVSLGLRMEEMIFNLADTHLFFNDLEECDQVHIDD
                     VSSDDNGQDLSTYNFGTDGFPAAATSANLCLATGVRGGVDWMRKLAFRYRRVKEIYNT
                     YKNNVGGLLGPAKREAWLQLRAEIEALTDSWLTLALKALSLIHSRANCVNILVTTTQL
                     IPALAKVLLYGLGIVFPIENIYSATKIGKESCFERIIQRFGRKVVYVVIGDGVEEEQG
                     AKKHAMPFWRVSSHSDLMALHHALELEYL"
ORIGIN      
        1 gaccggtggt tccatgctta cttagctgga tcgtgggtaa aatgtaccac atcaggtact
       61 agtgggcttt gagtattctt ttcagaagga aatatttcat aaagaaatga tactgctcta
      121 tgaaacatct aataatctgc agtaccaggg aatcacccga tgagtttgct ttgagaggcc
      181 tttgccttgt acagattggg aaagccagga aggtggctgt taccaatgaa gaggctttga
      241 ataggtctgc tcggctcaga aaggtgcaaa catctcacac cagttccgat gttgctcttt
      301 cctcgagttg caggtctatg gaaatgcagg atctaaccag cccgcacagc cgactcagtg
      361 gtagtagcga atcccccagt ggccccaaac tcgatagctc tcatataaat agtacttcca
      421 tgactccgaa tggcaccgaa gttaaaacag aaccaatgag cagcagcgaa atagcttcaa
      481 cagcagcaga cgggtcttta gacagtttct caggttcagc tctcggaagc agcagcttta
      541 gtccaagacc agctcaccca ttctctccac cacagattta tccttccaac agaccatacc
      601 cacatattct ccctacccct tcctcacaaa ctatggctgc atatgggcaa acacagttta
      661 ccacaggaat gcaacaagcc acagcctacg ccacgtaccc acagccgggg cagcactatg
      721 gaatttcctc ctacggcatc aagacggaag gcggattgtc acagtctcaa tcacccggac
      781 agacgggatt tctcagctat ggcacgagct ttggcacccc tcaacctgga caggcaccgt
      841 acagctacca gatgcaaggt agcagtttta ccacatcgtc aggattgtac acaggaaata
      901 attcactcac caattcctcc ggatttaaca gttcacagca ggactatccg tcttatcctg
      961 gctttggcca gggtcaatac gcacagtatt ataacagctc gccgtatcca gcacactaca
     1021 tgacaagcag taacaccagc ccaaccacac cgtccaccaa tgccacttac caactccagg
     1081 aaccaccttc tggcgtcaca agtcaggcgg tcacagaccc cacagcagag tacagtacaa
     1141 tccacagtcc ttcaacaccc attaaagagt ccgattccga tcgactgcgt cgaggttcag
     1201 atgggaaatc acgtggccga ggcaggagaa acaataatcc ctcacctccc ccggattctg
     1261 atcttgagag agtgttcatc tgggacctgg acgagacgat catagttttt cactccttgc
     1321 tcacggggtc ctacgccaac agatatggga gggatccgcc tacttctgtt tcccttggac
     1381 tgcgaatgga agagatgatt ttcaacttgg cagacacaca tctatttttc aatgacctag
     1441 aagagtgtga ccaagtccat atagatgatg tttcttcaga cgacaatgga caggacctaa
     1501 gcacatacaa ctttggaaca gatggctttc ctgctgcagc caccagtgct aatttatgcc
     1561 tggcaactgg tgtccgaggt ggtgtggact ggatgcgaaa actagccttc cgctacagac
     1621 gagtaaaaga gatctacaac acctacaaaa acaatgtggg aggtctgctt ggcccagcca
     1681 agagggaagc ctggctccag ctaagggctg agattgaagc actcacagac tcctggctga
     1741 ccctggccct caaggccctc tccctcatcc actcccgggc aaactgtgtg aatattttag
     1801 taacgactac ccagctcatc ccagcgttgg caaaagtcct gctatatggc ttaggaattg
     1861 tgtttccaat agaaaatatt tacagtgcaa ctaaaatagg aaaggagagc tgttttgaga
     1921 gaataatcca aaggtttgga aggaaagtgg tgtatgtcgt cataggagat ggagtggaag
     1981 aggagcaagg agcgaaaaag catgcaatgc ccttctggag ggtctccagt cactcagacc
     2041 tcatggccct gcatcacgcc ttggaattag aatacctgta acagcctcgt gccaacctga
     2101 cgctgcacta ctgccctgtg gccagagata atcctgcagg cttgtcttgt gtcagtgctg
     2161 gactccagga tataccaatg tcagcatatg gatgcatggc tgctacagtc ttgactgcta
     2221 tcctcggggt taatggagga ccatgtttat tcttcagaac agctgttgac tctagtactg
     2281 tgaatccagt gaaaggaagc cgtgagaatg ttcttgcaca gtgtggtatg tcttggctat
     2341 attaactaca tggttcaaac ctgtgaagaa aagacctaca gacactttgg ttttcagcaa
     2401 atgtgatgta aacagcgtct gcaacccagc aaacttgatc ccacaacaaa gactgacatg
     2461 tgactgacat gtgactgaca tgtgtcccct gaacaaccat ggagctattt tctcaaaggt
     2521 ttactttttg gtgtctccca cccggggcaa tctgtacttc gctacttatt tatgaaaaag
     2581 actttggata aacagatttg ctgaagtata attcacatat catatgattc accatgaaag
     2641 acttctcagc ttcagatagt tgaagggaca atagcatgag aaataatcaa ggaaaagcct
     2701 tggcctgaga gtatggcaag tactttgaat tttagcacat tgcaaagtag tttaaagtat
     2761 gtctaattta aacatgtaaa atgtacatca ctgagacaat cgtgtacaga aagaattttt
     2821 ggtgtaaatt tgtaataatg gatgattctt atacattctg tttagggaaa tgctattatg
     2881 aggtagaaat gctttcctag gaagcttggg cacaaactcc tgcagtgcct tatctaagta
     2941 ttgggtataa atattgtaga taatggatct ttttgataat gttatctaag accaaaagca
     3001 tgaatgtcaa tgtcaacaag gattttattt tctcagtctt ttatcccatc catttttcta
     3061 atttgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgcgtgt gtgtgcgcat gtgtgttggt
     3121 tagaagggcc ttgataaaaa taacagtggc tcacaactga aaagttttga agtcttcctg
     3181 accacttccc tgactttctc gtttcaacac attaatgtat tatatgtaac tacttggaaa
     3241 agaatgacta ttcgaatgct tcatcccaca gaaagaatat agatgataga tatattttat
     3301 taataaaatt aagtggagcc tagcagagtc tccatgcact cagaatgatt accgcgtctg
     3361 ggtttcttgt ttatatcaag gaggacttta ctacataact gagtcagcag ctcttcttac
     3421 ccctactctt actcttccct tccccaccca gacaagggtc cttatcccat ggtgggtgtg
     3481 tctggccatc acaagaaaca ttaatgtcgc tctctgctta tgacaagaca gacataaacc
     3541 caaagggggt agggggagac acaaaaatga tcctgtttgt catgttataa gaaagatttc
     3601 ttccaaaatg atgaatttgt atacagtcag gagtctttct cattgtgtac tttgtgttgc
     3661 catgaaatta ccctttggat caattttaat gaatattatt aataagttat caataacatt
     3721 atttaatatt gggagcacca ggtttgaccc agagtagcag aaaaaccact ctactttttc
     3781 cttttctaaa agtcagtatt gctgctaaaa ttagtcattg taaattctcc aaattgttaa
     3841 aacgtaatgg aatttgtttc tcccctgatg cagacagaag tggccagtgt tgaaacttct
     3901 tcatttgata ttttgtcctc tgcagactga aaagacagcc ttgaccttgg ccttactgta
     3961 aacaggtgtg ctgtgtccac gattgtgtac agaacttttt tcttcattaa ttttgtgttt
     4021 aaattaataa acttgatttg tgcagtactg ta
//
