LOCUS       XM_039110905            4067 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EYA transcriptional coactivator and
            phosphatase 1 (Eya1), transcript variant X1, mRNA.
ACCESSION   XM_039110905
VERSION     XM_039110905.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039110905.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4067
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4067
                     /gene="Eya1"
                     /note="EYA transcriptional coactivator and phosphatase 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 10 ESTs, 3 long SRA reads, 15 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:502935"
                     /db_xref="RGD:1584849"
     CDS             120..2096
                     /gene="Eya1"
                     /codon_start=1
                     /product="eyes absent homolog 1 isoform X1"
                     /protein_id="XP_038966833.1"
                     /db_xref="GeneID:502935"
                     /db_xref="RGD:1584849"
                     /translation="MKHLIICSTRESPDEFALRGLCLVQIGKARKVAVTNEEALNRSA
                     RLRKVQTSHTSSDVALSSSCRSMEMQDLTSPHSRLSGSSESPSGPKLDSSHINSTSMT
                     PNGTEVKTEPMSSSEIASTAADGSLDSFSGSALGSSSFSPRPAHPFSPPQIYPSNRPY
                     PHILPTPSSQTMAAYGQTQFTTGMQQATAYATYPQPGQHYGISSYGALWAGIKTEGGL
                     SQSQSPGQTGFLSYGTSFGTPQPGQAPYSYQMQGSSFTTSSGLYTGNNSLTNSSGFNS
                     SQQDYPSYPGFGQGQYAQYYNSSPYPAHYMTSSNTSPTTPSTNATYQLQEPPSGVTSQ
                     AVTDPTAEYSTIHSPSTPIKESDSDRLRRGSDGKSRGRGRRNNNPSPPPDSDLERVFI
                     WDLDETIIVFHSLLTGSYANRYGRDPPTSVSLGLRMEEMIFNLADTHLFFNDLEECDQ
                     VHIDDVSSDDNGQDLSTYNFGTDGFPAAATSANLCLATGVRGGVDWMRKLAFRYRRVK
                     EIYNTYKNNVGGLLGPAKREAWLQLRAEIEALTDSWLTLALKALSLIHSRANCVNILV
                     TTTQLIPALAKVLLYGLGIVFPIENIYSATKIGKESCFERIIQRFGRKVVYVVIGDGV
                     EEEQGAKKHAMPFWRVSSHSDLMALHHALELEYL"
ORIGIN      
        1 gaccggtggt tccatgctta cttagctgga tcgtgggtaa aatgtaccac atcaggtact
       61 agtgggcttt gagtattctt ttcagaagga aatatttcat aaagaaatga tactgctcta
      121 tgaaacatct aataatctgc agtaccaggg aatcacccga tgagtttgct ttgagaggcc
      181 tttgccttgt acagattggg aaagccagga aggtggctgt taccaatgaa gaggctttga
      241 ataggtctgc tcggctcaga aaggtgcaaa catctcacac cagttccgat gttgctcttt
      301 cctcgagttg caggtctatg gaaatgcagg atctaaccag cccgcacagc cgactcagtg
      361 gtagtagcga atcccccagt ggccccaaac tcgatagctc tcatataaat agtacttcca
      421 tgactccgaa tggcaccgaa gttaaaacag aaccaatgag cagcagcgaa atagcttcaa
      481 cagcagcaga cgggtcttta gacagtttct caggttcagc tctcggaagc agcagcttta
      541 gtccaagacc agctcaccca ttctctccac cacagattta tccttccaac agaccatacc
      601 cacatattct ccctacccct tcctcacaaa ctatggctgc atatgggcaa acacagttta
      661 ccacaggaat gcaacaagcc acagcctacg ccacgtaccc acagccgggg cagcactatg
      721 gaatttcctc ctacggtgca ttgtgggcag gcatcaagac ggaaggcgga ttgtcacagt
      781 ctcaatcacc cggacagacg ggatttctca gctatggcac gagctttggc acccctcaac
      841 ctggacaggc accgtacagc taccagatgc aaggtagcag ttttaccaca tcgtcaggat
      901 tgtacacagg aaataattca ctcaccaatt cctccggatt taacagttca cagcaggact
      961 atccgtctta tcctggcttt ggccagggtc aatacgcaca gtattataac agctcgccgt
     1021 atccagcaca ctacatgaca agcagtaaca ccagcccaac cacaccgtcc accaatgcca
     1081 cttaccaact ccaggaacca ccttctggcg tcacaagtca ggcggtcaca gaccccacag
     1141 cagagtacag tacaatccac agtccttcaa cacccattaa agagtccgat tccgatcgac
     1201 tgcgtcgagg ttcagatggg aaatcacgtg gccgaggcag gagaaacaat aatccctcac
     1261 ctcccccgga ttctgatctt gagagagtgt tcatctggga cctggacgag acgatcatag
     1321 tttttcactc cttgctcacg gggtcctacg ccaacagata tgggagggat ccgcctactt
     1381 ctgtttccct tggactgcga atggaagaga tgattttcaa cttggcagac acacatctat
     1441 ttttcaatga cctagaagag tgtgaccaag tccatataga tgatgtttct tcagacgaca
     1501 atggacagga cctaagcaca tacaactttg gaacagatgg ctttcctgct gcagccacca
     1561 gtgctaattt atgcctggca actggtgtcc gaggtggtgt ggactggatg cgaaaactag
     1621 ccttccgcta cagacgagta aaagagatct acaacaccta caaaaacaat gtgggaggtc
     1681 tgcttggccc agccaagagg gaagcctggc tccagctaag ggctgagatt gaagcactca
     1741 cagactcctg gctgaccctg gccctcaagg ccctctccct catccactcc cgggcaaact
     1801 gtgtgaatat tttagtaacg actacccagc tcatcccagc gttggcaaaa gtcctgctat
     1861 atggcttagg aattgtgttt ccaatagaaa atatttacag tgcaactaaa ataggaaagg
     1921 agagctgttt tgagagaata atccaaaggt ttggaaggaa agtggtgtat gtcgtcatag
     1981 gagatggagt ggaagaggag caaggagcga aaaagcatgc aatgcccttc tggagggtct
     2041 ccagtcactc agacctcatg gccctgcatc acgccttgga attagaatac ctgtaacagc
     2101 ctcgtgccaa cctgacgctg cactactgcc ctgtggccag agataatcct gcaggcttgt
     2161 cttgtgtcag tgctggactc caggatatac caatgtcagc atatggatgc atggctgcta
     2221 cagtcttgac tgctatcctc ggggttaatg gaggaccatg tttattcttc agaacagctg
     2281 ttgactctag tactgtgaat ccagtgaaag gaagccgtga gaatgttctt gcacagtgtg
     2341 gtatgtcttg gctatattaa ctacatggtt caaacctgtg aagaaaagac ctacagacac
     2401 tttggttttc agcaaatgtg atgtaaacag cgtctgcaac ccagcaaact tgatcccaca
     2461 acaaagactg acatgtgact gacatgtgac tgacatgtgt cccctgaaca accatggagc
     2521 tattttctca aaggtttact ttttggtgtc tcccacccgg ggcaatctgt acttcgctac
     2581 ttatttatga aaaagacttt ggataaacag atttgctgaa gtataattca catatcatat
     2641 gattcaccat gaaagacttc tcagcttcag atagttgaag ggacaatagc atgagaaata
     2701 atcaaggaaa agccttggcc tgagagtatg gcaagtactt tgaattttag cacattgcaa
     2761 agtagtttaa agtatgtcta atttaaacat gtaaaatgta catcactgag acaatcgtgt
     2821 acagaaagaa tttttggtgt aaatttgtaa taatggatga ttcttataca ttctgtttag
     2881 ggaaatgcta ttatgaggta gaaatgcttt cctaggaagc ttgggcacaa actcctgcag
     2941 tgccttatct aagtattggg tataaatatt gtagataatg gatctttttg ataatgttat
     3001 ctaagaccaa aagcatgaat gtcaatgtca acaaggattt tattttctca gtcttttatc
     3061 ccatccattt ttctaatttg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg cgtgtgtgtg
     3121 cgcatgtgtg ttggttagaa gggccttgat aaaaataaca gtggctcaca actgaaaagt
     3181 tttgaagtct tcctgaccac ttccctgact ttctcgtttc aacacattaa tgtattatat
     3241 gtaactactt ggaaaagaat gactattcga atgcttcatc ccacagaaag aatatagatg
     3301 atagatatat tttattaata aaattaagtg gagcctagca gagtctccat gcactcagaa
     3361 tgattaccgc gtctgggttt cttgtttata tcaaggagga ctttactaca taactgagtc
     3421 agcagctctt cttaccccta ctcttactct tcccttcccc acccagacaa gggtccttat
     3481 cccatggtgg gtgtgtctgg ccatcacaag aaacattaat gtcgctctct gcttatgaca
     3541 agacagacat aaacccaaag ggggtagggg gagacacaaa aatgatcctg tttgtcatgt
     3601 tataagaaag atttcttcca aaatgatgaa tttgtataca gtcaggagtc tttctcattg
     3661 tgtactttgt gttgccatga aattaccctt tggatcaatt ttaatgaata ttattaataa
     3721 gttatcaata acattattta atattgggag caccaggttt gacccagagt agcagaaaaa
     3781 ccactctact ttttcctttt ctaaaagtca gtattgctgc taaaattagt cattgtaaat
     3841 tctccaaatt gttaaaacgt aatggaattt gtttctcccc tgatgcagac agaagtggcc
     3901 agtgttgaaa cttcttcatt tgatattttg tcctctgcag actgaaaaga cagccttgac
     3961 cttggcctta ctgtaaacag gtgtgctgtg tccacgattg tgtacagaac ttttttcttc
     4021 attaattttg tgtttaaatt aataaacttg atttgtgcag tactgta
//
