LOCUS       NM_001100725            1042 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus exosome component 7 (Exosc7), mRNA.
ACCESSION   NM_001100725 XM_001078932 XM_236745
VERSION     NM_001100725.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Staals,R.H., Bronkhorst,A.W., Schilders,G., Slomovic,S.,
            Schuster,G., Heck,A.J., Raijmakers,R. and Pruijn,G.J.
  TITLE     Dis3-like 1: a novel exoribonuclease associated with the human
            exosome
  JOURNAL   EMBO J 29 (14), 2358-2367 (2010)
   PUBMED   20531389
REFERENCE   2  (bases 1 to 1042)
  AUTHORS   Liu,Q., Greimann,J.C. and Lima,C.D.
  TITLE     Reconstitution, activities, and structure of the eukaryotic RNA
            exosome
  JOURNAL   Cell 127 (6), 1223-1237 (2006)
   PUBMED   17174896
  REMARK    Erratum:[Cell. 2007 Oct 5;131(1):188-9]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BF561514.1 and BC089995.1.
            
            On or before Nov 22, 2008 this sequence version replaced
            XM_001078932.1, XM_236745.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ226090.1, SRR8487230.93536.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-109               BF561514.1         7-115
            110-1042            BC089995.1         1-933
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..1042
                     /gene="Exosc7"
                     /note="exosome component 7"
                     /db_xref="GeneID:316098"
                     /db_xref="RGD:1309758"
     exon            1..64
                     /gene="Exosc7"
                     /inference="alignment:Splign:2.1.0"
     CDS             8..883
                     /gene="Exosc7"
                     /codon_start=1
                     /product="exosome complex component RRP42"
                     /protein_id="NP_001094195.1"
                     /db_xref="GeneID:316098"
                     /db_xref="RGD:1309758"
                     /translation="MASVSLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSN
                     TSGSARVKLGHTDILVGVKAEMGTPKLERPSEGYLEFFVDCSANATPEFEGRGGDDLG
                     TEIANTLYRIFNNKSSVDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAAL
                     FNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQE
                     EACSLASLLVSVTSKGVVTCMRKVGKGSLDPESIFEMMESSKRVGKVLHMSLQSLLHK
                     EESLGPKRPKVGFLG"
     exon            65..166
                     /gene="Exosc7"
                     /inference="alignment:Splign:2.1.0"
     exon            167..261
                     /gene="Exosc7"
                     /inference="alignment:Splign:2.1.0"
     exon            262..427
                     /gene="Exosc7"
                     /inference="alignment:Splign:2.1.0"
     exon            428..498
                     /gene="Exosc7"
                     /inference="alignment:Splign:2.1.0"
     exon            499..622
                     /gene="Exosc7"
                     /inference="alignment:Splign:2.1.0"
     exon            623..778
                     /gene="Exosc7"
                     /inference="alignment:Splign:2.1.0"
     exon            779..1017
                     /gene="Exosc7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagcagcatg gcgtcggtgt cgctaagcga ggctgagaag gtctacatcg ttcatggagt
       61 gcaggaagac cttcgggtgg atggccgtgg ctgtgaggac taccgatgtg ttgaagtaga
      121 gactgatgtg gtgtctaaca ccagtgggtc tgccagagtc aagctgggtc atacagacat
      181 cttggtggga gtgaaagcag agatggggac accgaagctg gagagaccaa gcgaaggcta
      241 cctggagttc tttgttgact gttcagccaa tgctacccca gaattcgaag ggcgaggagg
      301 tgatgacctc ggcacagaga ttgcaaatac cctctaccgg atatttaaca acaagagcag
      361 cgtcgacctg aggtccctct gcatcagtcc tcgggagcac tgctgggtgc tgtatgtgga
      421 cgtgctgctg ctggaatgtg gtgggaattt gttcgatgct atttccattg ctgtgaaagc
      481 tgctctcttc aacacaagga taccaagggt tcgtgttctg gaggatgaag aagggtcgaa
      541 ggacattgag ctgtctgatg atccttatga ctgcatccga ctgagtgtgg agaatgtccc
      601 ctgcattgtc accctatgca agattggctg ccggcatgtg gtggatgcca cacttcaaga
      661 ggaggcctgt tccctggcca gcttgctggt gtcggtgacc agcaaaggag tcgtgacatg
      721 catgaggaaa gtggggaaag gaagcctgga tcctgagagt atcttcgaga tgatggagag
      781 cagcaagcga gtgggcaaag tgctacacat gtccttgcag agtctcctgc acaaggaaga
      841 aagtctgggg cccaagaggc caaaagtcgg gttcctgggg tgattgtctt cactgtcctg
      901 gatggacatt ggttgctgca tttttccatt gagactggtt tgtatatatt tttcttaatt
      961 gttaaattta agtcaacatt tgtaaatgta aaaataaagc ctattttttg gtctggtaaa
     1021 aaaaaaaaaa aaaaaaaaaa aa
//
