LOCUS       NM_001109246            5433 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus exocyst complex component 6B (Exoc6b), mRNA.
ACCESSION   NM_001109246 XM_001069192 XM_001069238 XM_001069284
VERSION     NM_001109246.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5433)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 5433)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JACYVU010000148.1.
            
            [WARNING] On Apr 1, 2024 this sequence was replaced by
            NM_001109246.3.
            
            On Nov 27, 2020 this sequence version replaced NM_001109246.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR8487231.102351.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-181               JACYVU010000148.1  14879996-14880176   c
            182-347             JACYVU010000148.1  14814280-14814445   c
            348-395             JACYVU010000148.1  14809990-14810037   c
            396-486             JACYVU010000148.1  14808214-14808304   c
            487-532             JACYVU010000148.1  14808063-14808108   c
            533-737             JACYVU010000148.1  14800733-14800937   c
            738-914             JACYVU010000148.1  14725639-14725815   c
            915-983             JACYVU010000148.1  14710018-14710086   c
            984-1067            JACYVU010000148.1  14680253-14680336   c
            1068-1114           JACYVU010000148.1  14679794-14679840   c
            1115-1235           JACYVU010000148.1  14678010-14678130   c
            1236-1307           JACYVU010000148.1  14675099-14675170   c
            1308-1405           JACYVU010000148.1  14674331-14674428   c
            1406-1511           JACYVU010000148.1  14672215-14672320   c
            1512-1621           JACYVU010000148.1  14669169-14669278   c
            1622-1733           JACYVU010000148.1  14666285-14666396   c
            1734-1868           JACYVU010000148.1  14659466-14659600   c
            1869-2048           JACYVU010000148.1  14646994-14647173   c
            2049-2190           JACYVU010000148.1  14604775-14604916   c
            2191-2264           JACYVU010000148.1  14558928-14559001   c
            2265-2377           JACYVU010000148.1  14431726-14431838   c
            2378-5433           JACYVU010000148.1  14424743-14427798   c
FEATURES             Location/Qualifiers
     source          1..5433
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..5433
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /note="exocyst complex component 6B"
                     /db_xref="GeneID:500233"
                     /db_xref="RGD:1560638"
     exon            1..181
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     CDS             72..2504
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /codon_start=1
                     /product="exocyst complex component 6B"
                     /protein_id="NP_001102716.1"
                     /db_xref="GeneID:500233"
                     /db_xref="RGD:1560638"
                     /translation="MERVKMAEESLETAAEHERILREIESTDTACIGPTLRSVYDGEE
                     HGRFMEKLETRIRNHDREIEKMCNFHYQGFVDSITELLKVRGEAQKLKNQVTDTNRKL
                     QHEGKELVIAMEELKQCRLQQRNISATVDKLMLCLPVLEMYSKLRDQMKTKRHYPALK
                     TLEHLEHTYLPQVSHYRFCKVMVDNIPKLREEIKDVSMSDLKDFLESIRKHSDKIGET
                     AMKQAQQQRNLDNIVLQQPRLGSKRKSKKDVYTIFDTEVESTSPKSEQDSGILDVEDE
                     EDDEEVPGAQDLVDFSPVYRCLHIYSVLGARETFENYYRKQRRKQARLVLQPPSNMHE
                     TLDGYRKYFNQIVGFFVVEDHILHTTQGLVNRAYIDELWEMALSKTIAALRTHSSYCS
                     DPNLVLDLKNLIVLFADTLQVYGFPVNQLFDMLLEIRDQYSETLLKKWAGVFRNILDS
                     DNYSPIPVTSEETYKKVVGQFPFQDTELEKQPFPKKFPFSEFVPKVYNQIKEFIYACL
                     KFSEDLHLSSTEVDDMIRKSTNLLLTRTLSNSLQNVIKRKNIGLTELVQIIINTTHLE
                     KSCKYLEEFITNITNVLPETVHTTKLYGTTTFKDARHAAEEEIYTNLNQKIDQFLQLA
                     DYDWMTGELDNKASDYLVDLIAFLRSTFAVFTHLPGKVAQTACMSACKHLATSLMQLL
                     LEAEVRQLTLGALQQFNLDVRECEQFARSGPVPGFQEDTLQLAFIDLRQLLDLFIQWD
                     WSTYLADYGQPNCKYLRVNPVTALTLLEKMKDTSRKNNMFAQFRKNERDKQKLIDTVA
                     KQLRGLISSHHS"
     exon            182..347
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            348..395
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            396..486
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            487..532
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            533..737
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            738..914
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            915..983
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            984..1067
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            1068..1114
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            1115..1235
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            1236..1307
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            1308..1405
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            1406..1511
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            1512..1621
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            1622..1733
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            1734..1868
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            1869..2048
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            2049..2190
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            2191..2264
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            2265..2377
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
     exon            2378..5433
                     /gene="Exoc6b"
                     /gene_synonym="RGD1560638"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggccgcag agcctgggct gagggatcgt ggggtatttg ctgagagagg gccgcgcggc
       61 agcgccctgc gatggaacgg gtgaagatgg cggaggagag cctggagacg gcggcggagc
      121 acgagcggat cctgagagag atcgagagca cagacacggc ctgcatcggg cccacgctca
      181 ggtctgttta tgatggtgag gaacatggac gattcatgga gaagctagaa actcgtattc
      241 gcaatcatga tagagaaatt gagaaaatgt gcaactttca ctaccagggc tttgtggact
      301 ccattactga actgctgaaa gtacgaggag aagcccagaa actcaagaac caggtgacgg
      361 acactaacag gaaactgcag cacgagggca aggaactggt aatagcaatg gaagagctga
      421 agcagtgtcg actacaacag agaaatattt ctgctactgt tgataagcta atgttgtgtc
      481 ttccagtcct agagatgtac agtaaactga gggaccagat gaaaaccaaa aggcattatc
      541 ctgcactgaa gacactggag catctggaac atacctatct gcctcaagtg agccactatc
      601 gattctgtaa ggtgatggtg gacaacatcc ctaagcttcg ggaagaaata aaagatgttt
      661 ctatgtctga tctcaaagac tttctggaga gcatccgcaa gcattcagac aaaattggag
      721 agactgccat gaagcaagcc caacagcaaa gaaacctgga taacattgtc ttgcagcagc
      781 ctagactagg tagcaagaga aaatctaaga aagatgttta tacaatcttt gatacagagg
      841 tggagagcac aagcccaaag tctgaacagg attctggaat tctggatgtg gaagatgagg
      901 aagatgatga agaggtacct ggggctcaag acttggtgga tttctctcct gtgtatcggt
      961 gtctacacat atattctgtc ctgggtgccc gtgaaacatt tgagaattac taccgaaaac
     1021 agaggcgaaa acaagctcgt ttggtcctcc agcctccatc taatatgcat gaaactttag
     1081 atggctacag gaagtatttc aatcaaattg taggcttttt tgtggtagaa gatcacattt
     1141 tgcatacaac ccagggctta gtgaatagag cctacattga tgaactatgg gaaatggcac
     1201 tttcaaagac catcgcagca ctgcgcaccc actcgtccta ctgttccgat ccaaaccttg
     1261 tgttagattt gaagaacctc attgtcctct ttgctgacac acttcaggtg tatggctttc
     1321 ctgtgaacca gctttttgat atgttgttag aaatcagaga ccagtatagc gagactctac
     1381 tgaagaagtg ggcgggggtt ttcagaaaca tacttgattc tgacaactac agtcccatac
     1441 cagtaacgag tgaagagaca tataaaaaag tcgtaggaca attcccattt caagatacag
     1501 aactggaaaa gcagccattt cccaaaaagt ttcctttctc tgaatttgtg ccaaaagttt
     1561 acaaccagat taaagaattt atctacgcct gcctgaagtt ttcagaagat cttcatctaa
     1621 gctccaccga agttgatgac atgatccgga agtctacaaa cctgttgctg accaggactc
     1681 tgagcaactc tctgcagaac gtcattaaga ggaagaacat tgggcttact gagcttgtcc
     1741 agattatcat caatacaaca cacctggaga agtcctgtaa atacctagag gaattcatca
     1801 ccaatatcac taatgtcctt ccagagacgg tccacaccac caagctttat ggtaccacaa
     1861 ctttcaagga tgctagacat gcagctgaag aagagatata tacaaactta aatcagaaga
     1921 ttgaccagtt tctgcagctg gctgactacg actggatgac aggggagctg gacaacaaag
     1981 ctagtgatta cctggtggac ctcattgcct tccttcggag tacgtttgct gtattcacac
     2041 accttcctgg aaaggtggcc cagacagcct gtatgtcagc ttgcaagcat ttagccactt
     2101 ccttgatgca acttttgcta gaagcagaag tacggcagct cactttggga gcattacagc
     2161 agttcaatct ggatgtcaga gaatgtgaac agtttgccag atccggcccg gtgcctgggt
     2221 tccaggagga cacgctgcag ttggccttca tcgacttgag acaactattg gacctcttta
     2281 ttcagtggga ttggtccaca tatcttgccg actatggaca gcccaactgc aagtacctcc
     2341 gggtgaaccc tgtgacagct ctgaccctgc ttgagaagat gaaagacact agccgcaaga
     2401 ataacatgtt tgcacagttc cggaaaaatg agcgagataa acagaaactg attgacactg
     2461 tggccaaaca gctccgagga ctcatcagca gccaccactc ctgaatgttg gccttggacc
     2521 cacagaggcc acttgccgta gccagtggtc caggatctcc cctgggctgg ccctgcattt
     2581 gtgcattctt cctcaaagag agcatatgta tttttttatt aacccctgta cagtattcac
     2641 ataacctttc cccatagtaa gagaggcaca agaataagca agaacaaggg cttaggggac
     2701 gttactgcca cactttcctg ggaaagctgt actgtcagtg ccaatgtggg gggggggggg
     2761 gacacctctt atccagcgct ccataaattt agtgggtgcc tggtacgggg agttgagacg
     2821 agaaagtgaa aggatgataa tatacatcct gtttgctctc aagtactcgc ttacatacag
     2881 agtagagcct ggcagacata cctatgtaat ataccaaagc taggtatatc tatctgcctt
     2941 gttggttgaa ttattggctc atgagagtgt ggcatgtggc aagatgacaa tttcactctg
     3001 gatccatagg tggcagtttc attagtgtag gtctaaccaa gccttgtggc agaaaaaggg
     3061 tagttagctg aataaacact cggtcccata ctgaaaagga agttgcccca ctacatgagt
     3121 tatttttctg aatcttaaaa gcccagcccc catggccatt catctctgtc ccttctttta
     3181 tgaccatagc acttggttca gaatgtaaat ctgcaatggc ttctgaaggc ccctgaggga
     3241 gaggctcaca ctccctccag cagcagtctc tttaaactct cagattccct gaggtctcag
     3301 agtagcctca ccatgggtag agcctcatga tgtttgagat tgcatactca tgttttaatg
     3361 acagccttac agctaccatc tttagagaaa atgtcccaag ctctataccc tgggcacagc
     3421 cgccatagga ctgggtgttt ctgagaatgg atctgtcacc atgaggtaga taggctcagc
     3481 tgtagctaat ggcttgttgt ctttggccca gctatcatca actaaatcac atcagagaca
     3541 aggcttgtct tgctcaagcc caaggctccc atgttctgag ctgcccctta gcctggccta
     3601 agagtgcttt cctggcatca tatctctaat ctctggagtc tgagccagcc agatagactc
     3661 ctgagatcct gtgaaggctt tcctgggttg ccagagggtt ctttgctctc agacttctgg
     3721 aagctgttag ctcgactgct gctgagagta taattgcatc atggaacact gaccaagatg
     3781 ccacaaaagt gtttccaggt ccagtgatga ttggagaaac tgttcaaaca atctcctatt
     3841 acctttgtta gtcattgtgc aattctggga cagccatact tccatatctc ttagcccatc
     3901 acagccaacc ccatcttgaa cacgccttgc ccttgccgta gcaatcttaa ataccaacaa
     3961 gaggagacca ctacacaggt acagctttct agaactggag agaaccagct acccaggtgc
     4021 tctgcttatg ccttcaagtc acatcatcag gctacacaat ggcccaaaag ttcaggaagg
     4081 gagtcacaga atactcaaaa cctacaagcc ataggaggac atgggcctgc gggaacaaag
     4141 acaaggtgat ctctcagagc cctctgttta ttgagaaggg tgagaagtaa ttccacgaac
     4201 ctgaagtcca gctgactgag aaggaaggaa aggtcctccc ttcaccaggg cttgtcagcc
     4261 ttcagtttag agatctacag tgggctgcca cagcatttgt cctttgggga cacttttaat
     4321 cactccatct tgctgcttat ctagtcgcca cctctgtccc aaaggaactg tcatagacaa
     4381 aatgaataac atgtggagga ccaaggactc tcttaccttc ctcactaaag tcctgctgaa
     4441 gagaaatctc atccagcctc agagatgtga ggatggccac ctgccttttc ctgcctctgc
     4501 atctgcctgt gctgttctct aacaaaagca gcatgctact tctgagctgt gaaagccagg
     4561 gacccacagt gtcaaggggg ttataaatcg atgaggtgga actttttttt gcattttctt
     4621 cataggctca aaactgagct ggccttgaag actcgagcac agtatgtgtg ctggtagacc
     4681 tcagactctg tgaccttacc tcagatgcct gcagaccaca cgccctgaag agtttcaggt
     4741 ggggtgagac actgctgcct ggatgtctgc tgccttccaa ccagatccat atccctgtag
     4801 acagtctggt ttgtgagcct tggtcggaca gtcagtggct cacttattgt ttatcattca
     4861 cgagggaaaa gtaaaacaaa gctctcagta ccaggtaata ctggtgtggg tggagaagag
     4921 caggaacagc atacaggaac ccagagtccc tgttagcaaa agcagtatct cccggtgact
     4981 gtcatgcatc tggcctgaca gtccatttag ctagctcagc cagtcccaag cccaagggtg
     5041 gcagtggcca gttttctcct tagacctctg agtgcaggct tggagtggct tcaccaagcc
     5101 ttcttcagac tgcttttgcc atgcccctcc ctccgccctc ctctgttcct tctcttttat
     5161 tcatctgcat tgtagtcact cctccctgat atgttggaaa tagcctttac attttacaca
     5221 gatccacagt tgtgggagaa atgcagtgag atccatctgt acctccaaaa ggaacctttt
     5281 cctctcgtgc tcactagaaa accagctctg ctgcaggctg ctgcataagg ggggactcct
     5341 ctgcggaaag agcatgagta cccccattcc cctgtatacc ttcctctttt aactgctatt
     5401 aaatgagaac ctacatacct gctccaaaag cca
//
