LOCUS       NM_001401335            3322 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus exocyst complex component 1 (Exoc1), transcript
            variant 5, mRNA.
ACCESSION   NM_001401335 XM_039091881
VERSION     NM_001401335.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3322)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On Feb 9, 2022 this sequence version replaced XM_039091881.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643289.34764.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-131               JAXUCZ010000014.1  32013997-32014127   c
            132-265             JAXUCZ010000014.1  32010872-32011005   c
            266-396             JAXUCZ010000014.1  32009492-32009622   c
            397-556             JAXUCZ010000014.1  32006260-32006419   c
            557-577             JAXUCZ010000014.1  32003273-32003293   c
            578-765             JAXUCZ010000014.1  32001594-32001781   c
            766-993             JAXUCZ010000014.1  32000429-32000656   c
            994-1126            JAXUCZ010000014.1  32000101-32000233   c
            1127-1236           JAXUCZ010000014.1  31998872-31998981   c
            1237-1290           JAXUCZ010000014.1  31998103-31998156   c
            1291-1440           JAXUCZ010000014.1  31994582-31994731   c
            1441-1546           JAXUCZ010000014.1  31987483-31987588   c
            1547-1710           JAXUCZ010000014.1  31981985-31982148   c
            1711-1818           JAXUCZ010000014.1  31981369-31981476   c
            1819-1895           JAXUCZ010000014.1  31979719-31979795   c
            1896-2124           JAXUCZ010000014.1  31978639-31978867   c
            2125-2308           JAXUCZ010000014.1  31976288-31976471   c
            2309-2508           JAXUCZ010000014.1  31969242-31969441   c
            2509-2703           JAXUCZ010000014.1  31967960-31968154   c
            2704-3322           JAXUCZ010000014.1  31965782-31966400   c
FEATURES             Location/Qualifiers
     source          1..3322
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p11"
     gene            1..3322
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /note="exocyst complex component 1"
                     /db_xref="GeneID:305287"
                     /db_xref="RGD:1304939"
     exon            1..131
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            132..265
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             142..2856
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /note="isoform 5 is encoded by transcript variant 5"
                     /codon_start=1
                     /product="exocyst complex component 1 isoform 5"
                     /protein_id="NP_001388264.1"
                     /db_xref="GeneID:305287"
                     /db_xref="RGD:1304939"
                     /translation="MTAIKHALQRDIFTPNDERLLSIVNVCKAGKKKKNCFLCATVTT
                     ERPVQVKVVKVKKSDKGDFYKRQIAWALRDLAVVDAKDAIKESPEFDLHFDKVYRWVA
                     SSIAEKNAFISCTWKLNQRYLRKKIDFLNVSSQLLEELPKVAEESVPSGENQSVAGGD
                     EEAVDEYQELNAREEQDIEIMMEGCECAISNAEAFAEKLSRELQVLDGANIQSIMASE
                     KQVNILMQLLDEALQEVDQIELKLSSYEEMLQSVKEQMDQISESNHLIHLSNTNNVKL
                     LSEIEFLVNHMDLAKGHVKALQDGDLASSRGIEACTNAADALLQCMNVALRPGHDMLL
                     AIRQQQQRFSELREHFARRLASHLNNVFVQQFTQALLQLYSRSYFLSVPGHDQSSTLA
                     QHSAELTLPNHHPFHRDLLRYAKLMEWLKSTDYGKYEGLTKNYMDYLSRLYEREIKDF
                     FEVAKMKMTGTTKESKKFGLHGSSGKLTGSTSSLNKLSVQSSGSRRSQSSSLLDMGNM
                     SASDLDVADRTKFDKIFEQVLSELEPLCLAEQDFISKFFKLQQHQNLSASMAEAEDLD
                     GGSLSRPQSSGSLLPVSSEKDMIRQMMIKIFRCIEPELNNLIALGDKVDSFNSLYMLV
                     KMSHHVWTAQNVDPASFLSTTLGNVLVTVKRNFDKCISNQIRQMEEVKISKKSKVGIL
                     PFVAEFEEFAGLAESIFKSAERRGDLDKAYTKLIRGVFINVEKVANESQKTPRDVVMM
                     ENFHHIFATLSRLKISCLEAEKKEAKQKYTDHLQSYVIYSLGQPLEKLNHFFEGVEAR
                     VAQGIREEEVSYQLAFNKQELRKVIKEYPGKEVKKGLDNLYKKVDKHLCEEENLLQVV
                     WHSMQDEFIRQYKHFEGLIARCYPGSGVTMEFTIQDILDYCSSIAQSH"
     exon            266..396
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            397..556
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            557..577
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            578..765
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            766..993
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            994..1126
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1127..1236
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1237..1290
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1291..1440
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1441..1546
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1547..1710
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1711..1818
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1819..1895
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1896..2124
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2125..2308
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2309..2508
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2509..2703
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2704..3322
                     /gene="Exoc1"
                     /gene_synonym="Sec3l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggatacggga agtggcggct tctggccgct tcttttccca gctcaatgaa aagcgtttca
       61 tagctgctct tgctgccggc gcccttgtag agtccgtctt ggagcaccaa cctcggccgg
      121 ccggcctcgc gctgagagaa gatgacagca atcaagcacg cactacagag agacatcttc
      181 acgcccaacg acgaacgcct gctgagcatc gtgaatgtct gcaaagcagg caaaaagaaa
      241 aagaactgtt ttctgtgtgc cacagtgaca actgaacgcc ccgtgcaggt gaaggtggtc
      301 aaagtcaaga aatctgacaa gggagatttc tacaaaaggc agattgcttg ggccctgcga
      361 gaccttgctg tggtagacgc caaagatgcc atcaaagaga gccctgagtt tgatttgcat
      421 tttgacaaag tgtacaggtg ggtggccagc agcatcgcag agaagaatgc cttcatctcc
      481 tgcacctgga agctgaacca gcgctacctc cgcaagaaaa tcgatttcct caacgtcagc
      541 tcgcagctct tggaagaact gcctaaagtt gcagaagaat ctgttccaag cggagagaat
      601 cagagtgtgg caggagggga tgaagaagca gtagatgagt accaagagtt aaatgcaaga
      661 gaagagcagg atatcgaaat aatgatggaa ggctgtgaat gcgccatttc taacgctgaa
      721 gcctttgcag agaagttgtc ccgagagctg caggtgctcg atggggccaa cattcagtca
      781 atcatggcct ctgaaaagca ggtgaacatc ctgatgcagt tgctggatga ggccctacag
      841 gaggtggacc agattgaact gaaactgagc agttatgagg aaatgctcca aagtgtaaaa
      901 gagcaaatgg accagatctc cgaaagcaac cacctgatcc acctgagcaa cacgaataac
      961 gtgaagctcc tgtctgagat agagttcctt gtgaaccaca tggacttggc caaaggtcat
     1021 gtaaaggccc ttcaggatgg agatcttgct tcttccagag gcattgaggc ctgcaccaat
     1081 gctgctgacg cccttctgca gtgcatgaac gtcgcccttc gaccaggcca tgacatgctc
     1141 ctggccatca ggcagcagca gcagcgcttc agcgagctga gggagcattt tgcccggaga
     1201 ctggccagtc atctcaacaa tgtttttgtt caacagttca ctcaggccct ccttcagctc
     1261 tatagcaggt cctactttct ttccgttcct ggtcacgatc agagctcaac ccttgctcag
     1321 cactctgctg aactgactct gcccaaccac catccatttc atagagactt gctccgctat
     1381 gccaagctga tggagtggct aaagagtaca gattatggaa aatatgaggg actgacaaag
     1441 aattacatgg attatttatc ccgactatat gaaagagaaa tcaaagattt ctttgaagtt
     1501 gcaaagatga agatgactgg caccactaaa gaaagcaaga agttcggtct ccatggaagc
     1561 tctgggaaac tcactggatc aacttctagt ctgaataaac tcagtgttca gagctcgggc
     1621 agtcgcaggt cccagtcatc ctccctgctg gacatgggga acatgtccgc ttctgacctc
     1681 gatgtggccg acagaaccaa atttgataag atctttgagc aggtgctgag cgagctggag
     1741 ccgctgtgtc tggcagagca ggacttcata agtaaatttt tcaaactaca gcaacatcaa
     1801 aacctgtctg cgtcaatggc tgaagcagaa gacctggatg gaggctcatt atcacggcca
     1861 cagagttctg gctccctgct gcctgtgtcc tctgagaaag atatgattcg ccaaatgatg
     1921 atcaaaatat tccgttgcat tgaaccagag ctgaacaacc tcattgcatt aggagacaaa
     1981 gttgatagct ttaactccct gtacatgctt gtcaagatga gccaccacgt gtggacggcg
     2041 cagaacgtgg acccagcctc tttcctaagc actacattag gaaacgtttt ggtgactgtg
     2101 aagaggaact ttgacaaatg cattagtaac cagataaggc aaatggaaga agtaaagatc
     2161 tcaaagaaaa gtaaagtagg aattcttcca tttgttgctg aatttgaaga atttgctgga
     2221 ctggcggagt caattttcaa aagtgctgaa cgccgtggcg atctggacaa agcatacacc
     2281 aaattaatca gaggcgtgtt cattaatgtg gagaaagtag caaatgaaag ccagaagacc
     2341 ccgagggatg tggtcatgat ggagaacttt caccatattt ttgcaacgct ttctcgtctg
     2401 aaaatctcat gtcttgaagc tgagaaaaaa gaagccaagc agaagtacac tgatcacctt
     2461 cagtcttacg tcatttactc tttaggacag ccccttgaaa aactaaatca tttctttgaa
     2521 ggggttgaag ctcgagtagc ccagggcatt cgggaggagg aggtgagcta ccagctagca
     2581 ttcaacaagc aagagctccg caaggtcatt aaggagtatc ccggcaagga agtgaagaag
     2641 ggtctggata acctctacaa gaaggttgac aagcacttgt gtgaagagga gaacttactt
     2701 caggtggtgt ggcactccat gcaagatgaa tttatacgcc agtacaagca cttcgagggg
     2761 ttgatagcgc gctgttaccc tggatctgga gttacgatgg aattcaccat tcaggacatt
     2821 ctggattact gctccagcat cgcacagtcc cactaagctt tgtgacagag agaaagaagt
     2881 gagcatgccc ttcagcccac caaacactac gtagaaagta aagcacgtgc ttcgagcagc
     2941 cagactccag cctctgttac taatgtcaga taactgcagg aagcggctgc agctcgggtt
     3001 tctttggcct gcaggtggtg tacgtaagct tttatctcat catgagaagc cttcagcact
     3061 ttgcagtgac agggcaggac atccttgact gccccctgct tgtgttgcag tgactgtgct
     3121 gaggggatgg tgggagctgt cagcactcac atgcgccagt ggctcacaaa tcatggaact
     3181 gtgaacactg tacagaactg tttgtccccg tgtctcacca gtgtgcatat gggcaaggga
     3241 gctgatgggg taatcagtta ccagcctgga ttttaaggat gatgtagctc tgtatattaa
     3301 ataaaggaca ttattaaaag tt
//
