LOCUS       XM_039089907            4116 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ecotropic viral integration site
            5-like (Evi5l), transcript variant X1, mRNA.
ACCESSION   XM_039089907
VERSION     XM_039089907.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089907.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4116
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4116
                     /gene="Evi5l"
                     /note="ecotropic viral integration site 5-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 38 ESTs, 1 long SRA read, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 140 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:304201"
                     /db_xref="RGD:1561962"
     CDS             248..2695
                     /gene="Evi5l"
                     /codon_start=1
                     /product="EVI5-like protein isoform X1"
                     /protein_id="XP_038945835.1"
                     /db_xref="GeneID:304201"
                     /db_xref="RGD:1561962"
                     /translation="MSLSTMASPTLSPDSSSQEALSAPTCSPTSDSENLSPDELELLA
                     KLEEQNRLLEADSKSMRSMNGSRRNSGSSLVSSSSASSNLSHLEEDTWILWGRIANEW
                     EEWRRRKEKLLKELIRKGIPHHFRAIVWQLLCSATDMPVKNQYSELLKMSSPCEKLIR
                     RDIARTYPEHEFFKGQDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEE
                     EAFCVFVRLMQEYRLRELFKPSMAELGLCIYQFEYMLQEQLPDLNTHFRSQSFHTSMY
                     ASSWFLTLFLTTFPLPVATRVFDIFMYEGLEIVFRVGLALLQVNQTELMQLDMEGMSQ
                     YFQRVIPHQFDSCPDKLVLKAYQVKYNPKKMKRLEKEYAAMKSKEMEEQIEIKRLRTE
                     NRLLKQRIETLEKESAALADRLIQGQVTRAQEAEENYVIKRELAVVRQQCSSTAEDLQ
                     KAQSTIRQLQEQQENPRLTEDFVSHLETELEQSRLRETETLGALREMQDKVLDMEKRN
                     SSLPDENNVARLQEELKALKVREGEAVASARELKLQLQELSDTWQAHVSRGGRWKESP
                     RKLVLGELQDELMTMRLREAQALADGREWRQRVVELETQDNIHRNLLNRVEAERAALQ
                     EKLQYLAAQNKGLQTQLSESRRKQAEAECKSKEEVMAVRLREADSMAAVAEMRQRIAE
                     LEIQREEGRIQGQLNHSDSSQYIRELKDQIEELKTEVRLLKGPPTFEDPLAFDGLSLT
                     RHLDEDSLPSSDEELLGVGVGVGVGAALQDPLYPLSPRDARFFRSLDRPAKDSEGSSD
                     SDADELATPYSNQVLDN"
ORIGIN      
        1 ctggctgggg gggcggggca gtggctcctg tcagcgggtg aaatggcagt ggcggagccg
       61 gcgacggccg cggtccccgg gggtggctga ttgaaagggg ccgggccgcg gggtttgcgg
      121 gacccccgag cagacgcgac cgcgggtagg ggcatcggac gacgcagcgc agggacagcg
      181 aggcgaggcg cggcgatggc ggcgctctcg gcgcagatag agttgtaacc tggtatctcc
      241 ctggctgatg agcctgtcca ccatggcaag ccccactctg agccccgact cctcatctca
      301 ggaggccctg tcagcaccca cctgctcccc aacctctgac tccgagaacc tcagcccaga
      361 tgagctagaa ctactggcca agcttgagga gcagaaccgg ctcctggaag ccgactccaa
      421 gtccatgcgc tccatgaatg gctcccggag gaacagcggc tcctccctgg tatccagctc
      481 ctccgcctcc tccaacctga gccacctgga ggaggacaca tggattctct ggggccggat
      541 tgccaacgag tgggaggaat ggcggcgcag aaaggaaaag ctactcaagg agctgatccg
      601 aaagggcatc ccacaccact tccgggccat cgtttggcag ctcctgtgca gtgccacaga
      661 tatgcccgtc aaaaaccagt actccgagct cctcaagatg tcctcaccat gtgagaagct
      721 gatccgaagg gacattgccc gcacctatcc agagcatgag ttcttcaaag gccaggacag
      781 cctgggccag gaagtcctct tcaatgtcat gaaggcatac tccctggttg atcgggaggt
      841 tggatattgc caaggcagtg ccttcattgt gggcttactc ctcatgcaga tgcctgagga
      901 agaggccttc tgtgtgtttg tgcggctgat gcaggagtac cggctacggg agctcttcaa
      961 gcccagcatg gccgagctgg gactctgtat ctaccagttt gaatacatgc tgcaggagca
     1021 gcttccggac ctgaacaccc acttccgctc acagagcttc cacacatcca tgtatgcatc
     1081 atcctggttc ctcacgcttt tcctcaccac ctttcccctg cctgttgcta cccgggtctt
     1141 tgacatcttt atgtatgagg gactggagat tgtgttccga gtcggccttg ccctgctgca
     1201 agtgaaccag acagagctga tgcagctgga catggagggc atgtcccagt acttccagag
     1261 agtgatcccc caccagtttg acagctgccc agacaagctg gtcctcaagg cttaccaggt
     1321 caagtacaac cctaaaaaga tgaagaggct ggagaaggag tacgcagcta tgaagagtaa
     1381 ggagatggag gagcagatcg agatcaaaag gcttcgaaca gagaaccggc tgctcaaaca
     1441 gcggattgag accctagaga aggagagcgc ggccttggct gataggttaa tccagggaca
     1501 agtgacacgg gcacaggagg ctgaggagaa ctatgtcatc aagcgggagt tggcagtagt
     1561 gagacaacaa tgtagctcga ctgcagagga ccttcagaaa gcacagagta ccattcggca
     1621 gttgcaagaa cagcaggaaa accctcgcct aacagaggac tttgtttccc acctggagac
     1681 agaactggag cagtcacggt tacgggagac cgagactctg ggggcccttc gagaaatgca
     1741 ggacaaagtt ctggacatgg aaaagagaaa cagctcactg ccggatgaga acaatgtagc
     1801 caggctgcag gaagaactca aggccctcaa ggtgcgggag ggcgaggccg tagcctctgc
     1861 gcgggaactg aagctgcagc tgcaggagct ctcagacacc tggcaggctc atgtttcccg
     1921 cggtggccgc tggaaggagt ccccgcggaa gctggtcctg ggagagttac aggatgagct
     1981 catgactatg cgtttgcgtg aggcacaggc cctggcggat ggccgtgagt ggcggcagcg
     2041 cgtggtggaa ctggagacgc aggacaacat ccaccgcaac ctgctgaacc gggtggaggc
     2101 ggaacgcgcg gctctgcagg agaagttgca gtacctggca gcacagaaca agggactcca
     2161 gactcagctc agcgaaagcc gccgcaagca ggccgaggct gagtgcaaga gtaaggagga
     2221 agtgatggct gtgcgccttc gggaggcaga cagcatggct gcagtggcgg agatgaggca
     2281 gcgcatcgca gagctggaga tccagaggga ggagggccgc atccagggcc agctgaacca
     2341 ttcggattca tcgcagtaca tccgtgagct gaaggaccag attgaggagc tgaagactga
     2401 ggttcggttg ctgaaaggcc cacccacatt cgaggacccg ctggctttcg atgggctgag
     2461 cctaacgcgg cacctggacg aggattcgct accgtcttct gatgaggagc tgcttggtgt
     2521 gggtgtgggc gtgggcgtgg gcgcagccct gcaggaccca ctctaccctc tgtctccccg
     2581 ggacgcacgc ttcttcagaa gtctggaccg gccagccaag gacagcgaag gcagctcaga
     2641 cagcgatgca gatgagctag ccacgcctta cagcaaccag gtcctggaca actgaagctg
     2701 ggggcccact cactgggagc ctagaggccc acattgctgt gaggagagag cagcagtcca
     2761 tgaccttgct gctccacagt actaaggaac tctgtgcctc tgtaactccc gccaactgag
     2821 ggccaggtgg aggaggcagc acagagggca gggcctactg gcaggcctgg cccacatagc
     2881 agtgtttacc cgttttagac catatcgtcc aagccctcct gagttcaagg ggtgcatggg
     2941 ccagttacct ggagggtgtt gctctcctaa catggacaag ggccgaaagt gcagaggtcc
     3001 caggacttgt taataagcag ggaacttcct cttcctagtc agcttccctt tgggacaagg
     3061 gtggccctgc tgggtggggc ccaggaacta cagtaggtct gaggaaggag gggtaacttg
     3121 gactggatat agcaccctag gacaggttct ttggacacag tgatattgaa cagccagccc
     3181 cttgccactg gggacagatg gccaggctgg acttttctgc ctggtgcagg catcatggtc
     3241 cctgcagcag aaaccaaagt cccccacccc catcatgtct gcaggaccac ctggggtgtg
     3301 agtagtcagt gggaaccagc ttaagcctgg gcagtgtctc cccactctct agggctatag
     3361 aagctgcaaa gaagagaccc tttccctaga gcacccatct tgctctgggg agccccgtat
     3421 cacacgtgtt ggctggctgt agaagagagc cccccttggg gagttctcag cctcagttca
     3481 cacattcctg tggacttact ccactcattc tggctagact tcccccagtc agttacctcc
     3541 cctatgtcct cgaagtcccc atggtctctg cccagtcaga gttgagaatg gtgccaaagt
     3601 ccatcagtgt tccccgggct cctttatccc tcacccctgc atcttgggac ccacccctag
     3661 gggctgaccc ctctcagtgc tcctagagcc tcaggtagaa tggtgcccac agcattccct
     3721 gggtgcttcc taggtggggc ccccagctca gtctccattc ctggtggccc actcgtcaag
     3781 tgttaaaaac gcctgggggc tggggcaggg tacccctgag gaggccctca tgtgctcctc
     3841 atgtgctcct ccacactgcc caccaccatt ttgcacactg cctgttcaca ctccatgtct
     3901 ccaaggcaga aaagatggaa aataaagtgt atttacacag tcacggggga cgccgagtag
     3961 agccagagct ggggcagtca cagcaagaag acgctaagcc ctcatccgtg ttctggaagt
     4021 tccaagatgg atccagtggc taggtggtgt gggaaatgcc acagggatga agagagggct
     4081 tgagcctgac caatccaaaa ctgtcagctt caggaa
//
