LOCUS       NM_001271410            5821 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus ecotropic viral integration site 5 (Evi5), mRNA.
ACCESSION   NM_001271410 XM_002724925 XM_002728062
VERSION     NM_001271410.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5821)
  AUTHORS   Yoshimura,S., Egerer,J., Fuchs,E., Haas,A.K. and Barr,F.A.
  TITLE     Functional dissection of Rab GTPases involved in primary cilium
            formation
  JOURNAL   J Cell Biol 178 (3), 363-369 (2007)
   PUBMED   17646400
REFERENCE   2  (bases 1 to 5821)
  AUTHORS   Fuchs,E., Haas,A.K., Spooner,R.A., Yoshimura,S., Lord,J.M. and
            Barr,F.A.
  TITLE     Specific Rab GTPase-activating proteins define the Shiga toxin and
            epidermal growth factor uptake pathways
  JOURNAL   J Cell Biol 177 (6), 1133-1143 (2007)
   PUBMED   17562788
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On or before Sep 22, 2012 this sequence version replaced
            XM_002724925.2, XM_002728062.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.2272349.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on computational evidence
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-85                JAXUCZ010000014.1  2020581-2020665
            86-315              JAXUCZ010000014.1  2052466-2052695
            316-505             JAXUCZ010000014.1  2071951-2072140
            506-730             JAXUCZ010000014.1  2072714-2072938
            731-805             JAXUCZ010000014.1  2073812-2073886
            806-931             JAXUCZ010000014.1  2078362-2078487
            932-1075            JAXUCZ010000014.1  2080385-2080528
            1076-1165           JAXUCZ010000014.1  2081357-2081446
            1166-1263           JAXUCZ010000014.1  2081539-2081636
            1264-1324           JAXUCZ010000014.1  2083682-2083742
            1325-1378           JAXUCZ010000014.1  2088357-2088410
            1379-1513           JAXUCZ010000014.1  2105507-2105641
            1514-1654           JAXUCZ010000014.1  2106777-2106917
            1655-1813           JAXUCZ010000014.1  2108647-2108805
            1814-1960           JAXUCZ010000014.1  2116505-2116651
            1961-2056           JAXUCZ010000014.1  2118893-2118988
            2057-2152           JAXUCZ010000014.1  2139402-2139497
            2153-5821           JAXUCZ010000014.1  2162925-2166593
FEATURES             Location/Qualifiers
     source          1..5821
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p22"
     gene            1..5821
                     /gene="Evi5"
                     /note="ecotropic viral integration site 5"
                     /db_xref="GeneID:100360066"
                     /db_xref="RGD:2322879"
     exon            1..85
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     CDS             35..2464
                     /gene="Evi5"
                     /note="rCG57228-like"
                     /codon_start=1
                     /product="ecotropic viral integration site 5 protein
                     homolog"
                     /protein_id="NP_001258339.1"
                     /db_xref="GeneID:100360066"
                     /db_xref="RGD:2322879"
                     /translation="MVTTKMTAVFRNPNRRQVATDKVAEKLSSTLSWVKNTVSHTVSQ
                     MASQVASPSASLHTTSSSTTLSTPTQSPSSPSKLSPDDLELLAKLEEQNRLIETDSKS
                     LRSVNGSRRNSGSSLVSSSSASSNLSHLEEDSWILWGRIVNEWDDVRKKKEKQVKELV
                     RKGIPHHFRAIVWQLLCDAQTMPVKDQYSELLKMTSPCEKLIRRDIARTYPEHNFFKE
                     KDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLLQMPEEEAFCVFFKLMQDYRL
                     RELFKPSMAELGLCMYQFECMIQEYLPELFVHFQSQSFHTSMYASSWFLTIFLTTFPL
                     PIATRIFDIFMSEGLEIVFRVGLALLQMNQAELMQLDMEGMLQHFQKVIPHQFDGGPE
                     KLIQSAYQVKYNSKKMKKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKHK
                     CSSTYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKKNNSFPDENNIARLQ
                     EELIAVKLREAEAIMGLKELRQQVRDLEEHWQRHVARTSGRWKDPPKRNAVSELQGEL
                     MSIRLREAETQAEMREMKQRMMEMETQNQINSNQLRRAEQEVTSLQEKVCSLSLKNKG
                     LLAQLSEAKRRQAEIECKNKEEVMAVRLREADSIAAVAELQQHIAELEIQKEEGKLQG
                     QLNRSDSKQYIRELKDQIAELTHELRCLKGQRDFSSRPPFDGIHIVSHLIGDDESFHS
                     SDEDFIDSSLQESAIGFPLHRKSGPVSLNPALADGSESEAEDGVLGTQESDPEAPEKQ
                     IPQRESYSTTV"
     exon            86..315
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     exon            316..505
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     exon            506..730
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     exon            731..805
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     exon            806..931
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     exon            932..1075
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     exon            1076..1165
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     exon            1166..1263
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     exon            1264..1324
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     exon            1325..1378
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     exon            1379..1513
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     exon            1514..1654
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     exon            1655..1813
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     exon            1814..1960
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     exon            1961..2056
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     exon            2057..2152
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
     exon            2153..5821
                     /gene="Evi5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caaatcccca gcctcctagt ctcctcctcc catcatggtt accaccaaga tgactgctgt
       61 ctttagaaac cctaatagga gacaggtggc gacagacaag gtggcagaaa agctgagttc
      121 tactctctca tgggtgaaga acacagtctc gcacacagtc agtcagatgg ccagccaggt
      181 ggcaagtcca tcagcctcac tacataccac atcctcatct accacactgt caacaccaac
      241 acagtcacca tcttccccat caaagttgag tccagacgac ttagaactcc tggctaagct
      301 ggaggaacaa aacagattaa tagagacaga cagtaagtct ttaagatcag tgaatgggtc
      361 aagaagaaac agcggctcct ctcttgtttc aagttcatcg gcctccagca acctcagcca
      421 cttggaggaa gactcttgga ttctatgggg aagaattgtg aatgagtggg atgatgtacg
      481 caagaagaaa gaaaagcaag tgaaggagct cgttcgtaaa gggatacccc accacttcag
      541 agccatagtt tggcagcttc tgtgtgatgc tcagactatg ccggttaagg accagtattc
      601 agagctactg aagatgacgt caccttgtga gaagctgatc cggagggaca ttgccagaac
      661 ttacccagaa cacaacttct ttaaggaaaa agatagcctt ggacaggagg ttttatttaa
      721 tgtaatgaag gcgtactcct tagtggaccg cgaggttggc tactgtcagg gcagtgcttt
      781 catagttgga ctgctgcttc tgcagatgcc agaagaagaa gctttttgcg tattttttaa
      841 attaatgcaa gactaccgac ttcgtgaact gtttaagcca agtatggcag agttgggcct
      901 gtgcatgtac cagtttgaat gcatgataca ggagtatctt ccagagctct ttgtacattt
      961 tcagtctcag agtttccata catcaatgta tgcatcatcc tggttcctga ctatctttct
     1021 tacaactttc ccactaccaa ttgcaacaag gatatttgac atctttatgt ctgagggttt
     1081 agaaatagtg tttcgagtag gattagcact tcttcagatg aatcaggcag aattaatgca
     1141 acttgacatg gaagggatgt tacagcactt ccagaaggtc attccacatc agtttgatgg
     1201 tggcccagaa aaattaatcc agtcagctta ccaagtcaaa tacaactcaa aaaaaatgaa
     1261 aaaacttgaa aaagaataca ctacaataaa aactaaagaa atggaagagc aaggtgaaat
     1321 taaaaggtta cgcacagaaa acaggctttt aaaacagcgc attgaaacac tagaaaaaca
     1381 taaatgcagt tccacctaca acgaagattt tgtgctgcag ttggagaagg agttggtcca
     1441 agccagactg agtgaagctg agtctcagtg tgccctgaag gagatgcagg acaaagtgct
     1501 ggacatagag aagaagaaca actcatttcc tgatgagaat aacattgcaa ggcttcagga
     1561 agaactcatt gctgtgaagc tgagggaagc tgaagccatt atgggtttga aagaacttcg
     1621 acagcaagtc agagacttag aagagcactg gcagcgtcac gtagctcgga cttctgggag
     1681 gtggaaagac ccacccaaga gaaacgccgt gagtgagctg cagggtgagc taatgagcat
     1741 tcgcctcaga gaagcggaga cccaggcaga gatgagagag atgaagcaga ggatgatgga
     1801 gatggagacg cagaaccaga tcaatagtaa ccagcttcga agagcagagc aagaggtgac
     1861 cagtctgcag gagaaggtgt gctccctgtc tctgaagaac aaggggttgc ttgcccagtt
     1921 gagtgaggcg aagcgcaggc aggcagagat tgaatgcaag aataaggaag aagtcatggc
     1981 tgtgaggctc cgggaagctg atagcatagc tgccgtcgcc gaattacagc agcacattgc
     2041 tgagcttgag atccagaaag aagagggtaa gctccaagga caacttaaca ggtctgactc
     2101 taagcagtac attcgggagc tgaaggacca gatagcagag ctgactcacg agctcagatg
     2161 cctaaaaggc cagcgggact tctccagccg acctcctttt gatgggatcc acattgtcag
     2221 ccatctaata ggagacgatg agtcattcca ctcgtctgat gaagatttta tagatagttc
     2281 cttacaggaa agtgccattg gttttccttt gcacagaaaa tctggccccg tgtctctgaa
     2341 tcctgctttg gcagatggca gtgagagcga agcagaagat ggtgtgctgg gaactcagga
     2401 gagtgacccg gaggctccag agaagcagat cccacagagg gagtcctact caactaccgt
     2461 gtgaccgacc gaccgtcact gtgacagctg gagtcctgag ggcagcagtg ttacacgaga
     2521 agagccggag ccatcccttg tcctgtacac atcagtctgt tttacagtct tctctgactg
     2581 tctttgccaa atgctcactg aatttccatt gccacagtag actgaagtat gtaattggta
     2641 aatggggctc taacagtatt accgagtata aatgtttcct atttagaaaa tactgctatg
     2701 tctaaatgtg aggactgttt aaacattgag gactgtggga aattgggttc tttttaaaca
     2761 aaactgctct tgtgcagtgt tttatgctcc ttgaacaaac tgtacatttg tgttcattaa
     2821 tgtgcttcca agtcagctgc ctttacccat ctgaccagaa cttagatgtg attcaacctg
     2881 tgtttgagga tgtctctctc ttcactaaaa ttcagttgtt tgtggcaatt agagactgtc
     2941 acacgacact ttttctctgt ataatttcta aacacaaagt aattgttctg aaagtttttt
     3001 gttttagttt ctaagtttta tgtgtattat acttctctct gttagtcaga atagtagcag
     3061 gttgactaca gatatagtat ttgtacatat ttataaatct gtatcaccca gcatcctctt
     3121 acaggagtag caaacattga caaggacttc cttcagcgtt ctaacaagac ttctgtaaat
     3181 aacaggtgaa aagaaaacta aatacaaatc agacactacc ggcttagcag ctctagtaac
     3241 ttgctagcag attcataact gattgccgct caaacactac tggtgaagtt ctttcctcca
     3301 tctttaacta ataaacttgt catggttaaa gaggctatag cacatactat ttcatgctaa
     3361 tctatttaat ataatttagc actagaataa ggtccaagat gcacagcaaa tatatctgaa
     3421 aaaaaaatgt tgtgagtctt ctatttaaat tctttagttt ctaacggaca ggtaaagcca
     3481 taaaaaccct ttactcttag tcgtttcctt gtgttcagac tttttctcta gaaagccgaa
     3541 tgcctgttag ttgtgagttg agaaaggaca cttaacctgt gggaaggctg caggccactg
     3601 ttgactggat gtctccacac tcttgttggc agcctaggaa aggaagagcc atagtgggaa
     3661 atagaattta gtacatttac ggaggtgcat tcgcacacag aatgttgtat atgtagagaa
     3721 aaatgtttta cagaatggag tagaagaaac aaaaaagttg tcattctaaa actgtgatgc
     3781 cttacgctgc attgggctag gctttcccag caagactgcc ccagctcctc tcttacttgg
     3841 cagacaagat tggaaccgtg ccgtctgtgt ccagagcacc cactaaattc tagtatttaa
     3901 tttacctgtg atcacaagct agttatttaa ggtattaatt caaatctctt tccaggcttt
     3961 tctaaaggcc tagctaatga gtttttcagt tccctgctct ctggcaataa agtaggttta
     4021 tttaaatctg tttcctgaga gtcttctgta gaggtgggcg ttcatgagca tcatagtcag
     4081 ggctctggta agagtggatc ctgctcccag tgttgacaac actgctgggg tctagtcctt
     4141 tagggttctc cagacagtcc tgaactgtta gtccagggag ttgtcgatag cccagtgaag
     4201 tgaaacgact tgtagccctg ttgttatcaa gatccacatc aggaaacctg aatggggcca
     4261 gcagaacagc tcataagtta ggatgcttac ctctgaatgc ccacgaccct gtctccagtt
     4321 ccagcaccac caaaaacaaa caagctcaga gaacttcctg agctctttgt ggtttgaagt
     4381 aggtgtgaaa taaccatggt aattcaactt gaattcattg acgctgttgt gctcgaagca
     4441 gcatctattc aaggttcttt gagtcaagtc aggtgtaggg actatgcctt catctcctcc
     4501 ttttctggaa gctgaggcag gaggattgct tgagtacaag accagcctgt gtaacagtaa
     4561 gattttgcct caaaaaaaaa aaaatttgaa tttacataca cctgagagat gtgaagtcct
     4621 tctggccgtt agggtcctgc aggacacttt gctccgatct gactcggtct cattcaaact
     4681 aatgtttagg tctgtttagg actgcaaggg gttggactgt gctctaatga cgagctttac
     4741 ttcatctgat atctttgtgt ctttctaatg gtatctgttc taaaacttga agaatgatct
     4801 aaggagtaaa tgggcggacg acggaccata gaaaaccctg ctctcttggg atagtgactt
     4861 tccgccccag gtgacactaa aggagaggct gcaagcccag accttaggat ccagaaagca
     4921 ctttaacaaa ccttcttttc agtactgggg atggaaccca gggccttaca cagtgggcaa
     4981 gctctctacc actgtgccac acccagatct gacttcttca aaatcaatgc atacattttc
     5041 tttatggaga acgaggccaa agagattgtt tttttcaact tcgactctgg tttcttgttg
     5101 tttgaatttt ttgttttggt ttgtttttat ttcgtttggc cagttggcgg ccagtcagtc
     5161 tttgctggtt gatggaaaca tcatattcca gctaactgtc tgtctgtgtt gaaaacaaga
     5221 gaagaagcct tttctagccc tgagcacagt gcagcttgtg aatttccagg cagtgccttt
     5281 gattggaaat gatgtcactg cttttgaagc acattgtccc tggcttcgta agaagtcact
     5341 tggttctgtg ttcaccatgc ataatgctct gtaatttcaa ttttagaggc taaggatgtc
     5401 aattatgttt cggtaagctc ttcatggtca gcatggtcac tgcacaacac caagacattg
     5461 ctggctagcg tatgcagagt cagtaactca ctaaagcagt gagtttcagc gtgaaagtta
     5521 ctgctactct agatgagcaa gcaattttta attaatttct tattaattct gaaattaatt
     5581 aaaatttctt attgacagta gagtaggcag atgctattta aaatccaact ttttacatta
     5641 cacccatgga cctacatacc tcttccttcc agagaagagg tggcacggta atacattgga
     5701 catgcaaagt tataaatgta tttcattgta ctgttgggtt ttcttaattg taacactgta
     5761 taacctaaaa tgtttacttg tgcctttgct ttaaataatt aaagtttctc attttgcaag
     5821 a
//
