LOCUS       XM_039091724            4306 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EvC ciliary complex subunit 1 (Evc),
            transcript variant X2, mRNA.
ACCESSION   XM_039091724
VERSION     XM_039091724.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091724.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4306
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4306
                     /gene="Evc"
                     /note="EvC ciliary complex subunit 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 2 ESTs, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     43 samples with support for all annotated introns"
                     /db_xref="GeneID:289712"
                     /db_xref="RGD:735186"
     CDS             122..3028
                     /gene="Evc"
                     /codon_start=1
                     /product="evC complex member EVC isoform X2"
                     /protein_id="XP_038947652.1"
                     /db_xref="GeneID:289712"
                     /db_xref="RGD:735186"
                     /translation="MTCRRDARLQLGREALQAAPTLLVPAVLLGALLGLGLGLWLGCR
                     ARRLRARLQKDDTKHLLRSSEPPAQSLRDTSSKARRRQRETTRDEDAPEVCEPSLSGN
                     ITAFALKARVVYPINQKFRPLADGSSHPSLHENLTQAAAILPHLPHQPAEASPASSLG
                     SLSQAGKEDGSSSSSMQSTYSDDRVLQCAFLRVGSFPEILAYESVDIDLCVCSLHLKD
                     LLQVDAALRQEKHLMFLQILKACLLECFPKKKPEEELYQKILSKQEHDLEELEKGLQA
                     RLANTEMLGTGDSGYISLADVERKERELSEQLIDNMGAFWKQMESMQPILMDQLKCSS
                     SKARQLMMTLTGRMIVAEGLLHESQDLHVLDTLERTMGRAHMARIVEFLRTQIQEETK
                     CRLAAISRGLELLTVQGQLSGRQKEELLTQQHKAFWEEAECFGREFMQRGKDLVQVSQ
                     AHRAEAVAELTRAQEEERRIFLADTQPTSDPEEFLKAFHEVLERQRLTRSDQEGEEDT
                     RITEAMAALCQELYCGTMETFQKFVDTLFLKTLPEVSSLPVAECEALRQQVQEQAARQ
                     LGQADRFRRRQWGLLCDLLEQDKRVWLEECTLSTVLQRQLRDHHESTIHGVLSRFSGL
                     SEESTRGILQGHELLLCSALRRLALRGTTITALAQMRLSGKKRLLQELHEQLALEQGV
                     SPCLEEHQWQLLRALEARILEETARLEDEAQQTALRLQQQLLAEAQEAGQLLQLHSER
                     AIGQALLVHARNVASKGRTRDKEDFKRTLVETVVESVYVTSTSVNRLVQVHYQGIGKL
                     LQAHEEQLLQRLKTLQDERINAYKLWKKQEFSDPPSESQTPGGTHGAPQAVQQRMTSQ
                     RKKLLDQFTKHQQGRLNSQRQKAQELDQLEAQLETQLQEAEQTLISELATLARVPLAE
                     NKPFSNKRGLPEKPVRTKRKKPPPREREDLGLPNDDHPALADHSTGPLRTSRIK"
ORIGIN      
        1 aggctgaaag tttggagcgg cgggtccaag ctcctcccac ggctcgggcg cagcgggaaa
       61 gggtaccgag gcgaggagct ggcgggcggc gggatgcggc gggtcacccg cccgagccct
      121 catgacctgc aggagagatg cgcgactgca gctgggccgg gaagccctgc aggcggcgcc
      181 tacgctgctg gtccccgcag tgctactggg tgccttactc ggcctgggcc tcggcctgtg
      241 gctcggctgt cgtgcgaggc gcttgcgcgc gcggctccag aaagatgaca caaaacatct
      301 gctcaggagt tcggagcccc ctgcacagag cctccgggat actagctcca aagccaggag
      361 gcgacagaga gaaaccactc gagatgaaga tgctcctgag gtgtgtgagc cgtccttgag
      421 tggcaacatc acggcctttg cactgaaagc cagagttgtc tatcccatca accagaagtt
      481 ccggcctctg gctgacggat cctcccaccc atcgctgcat gaaaacctga cacaggcagc
      541 agccatcctg cctcaccttc cccaccagcc ggcagaggcc tcgccagcca gcagtctggg
      601 cagcctgagc caggctggca aggaggatgg cagctcctcc tccagcatgc agtcaaccta
      661 cagcgacgac agggtcctcc agtgtgcctt cctccgggtg ggcagcttcc ctgagattct
      721 ggcctatgag agtgtagata ttgacctgtg tgtctgcagc cttcacctga aagacctgct
      781 tcaggtagac gcggcgctga ggcaggagaa gcacctgatg ttccttcaga ttcttaaagc
      841 atgcctcctg gaatgttttc ctaaaaagaa gcctgaggag gaattatacc agaagattct
      901 ttccaaacaa gaacatgatt tggaggaatt agaaaaagga cttcaggcca gattggcaaa
      961 cacagaaatg ttaggtaccg gcgactctgg ctacatttcc ctggcagatg tggagaggaa
     1021 ggagagagag ctctcagagc agctcataga caatatggga gctttctgga agcagatgga
     1081 aagcatgcag cccattctca tggaccagct taagtgttcc agctccaagg cacggcagct
     1141 catgatgact ctgacgggaa gaatgattgt cgctgaagga ctgctgcatg agtctcagga
     1201 cctgcatgtc ctggacactc tggagaggac aatgggtcga gcccacatgg caagaattgt
     1261 agagttcctg aggacccaga tccaggagga gaccaagtgc cggctggccg ccatctcccg
     1321 tggcctggag ctgctgactg tccaggggca gctgtctggg aggcagaagg aggaacttct
     1381 gacccaacag cacaaggcct tctgggagga ggcagagtgc tttggcaggg agtttatgca
     1441 gcggggcaaa gacctggtcc aggtgtctca ggctcaccgg gcagaggcag tggcagagct
     1501 cacacgggcc caagaagaag aacggaggat tttcctggct gatacccagc caacctcaga
     1561 tccggaagag ttcctcaagg cttttcatga ggtactggag aggcagcggc tgacacggag
     1621 tgaccaggag ggggaggagg acaccaggat cactgaggcc atggctgcgc tctgccagga
     1681 gctctactgt ggcaccatgg aaacgttcca aaagtttgtg gacaccctgt ttctgaagac
     1741 cctcccggaa gtgagcagcc tccctgtggc agaatgcgag gccctgaggc aacaggtcca
     1801 ggaacaggca gcaaggcagc tggggcaggc agaccgattc cgcagacgac agtgggggct
     1861 cctgtgtgac ctcttggagc aggacaaacg ggtgtggctg gaggagtgca cgctctccac
     1921 agtgctgcag aggcagctgc gggatcacca cgagagcacc atccacgggg tcctgagcag
     1981 attcagtggc ctctcggaag agtccacacg aggcatcctg cagggacatg agctgctgct
     2041 gtgctctgct ctgcgcagac tggccctccg aggtaccacc atcactgccc tggctcagat
     2101 gaggctgtct gggaagaaga ggctcctgca ggagctacat gagcagctag ctttagagca
     2161 gggtgtgtcc ccatgcctgg aggagcatca atggcagctg ctcagagccc tggaggcacg
     2221 gatcctggag gagacagcca ggttggagga tgaggcacag cagaccgctc tgcggctcca
     2281 gcagcagctg ctggcggagg cacaggaagc agggcagctg ttgcagctgc actcggagcg
     2341 ggccattggg caggcgctgc tggtacatgc taggaatgta gccagcaaag gccggaccag
     2401 ggataaggaa gactttaaga ggacgctggt ggagacagtg gtggagagtg tgtatgtgac
     2461 cagcactagt gtcaaccgcc ttgtgcaggt gcattaccag ggcatcggga agctcctgca
     2521 ggcccatgaa gaacaattgc tgcagcgcct gaagacccta caggatgaga gaatcaatgc
     2581 ttacaagctg tggaagaagc aagaattcag tgacccacca tcagagagcc agacaccagg
     2641 cggtacccat ggagcgcccc aggctgtaca gcagaggatg acgtcacagc ggaagaagct
     2701 cctggaccag ttcacaaagc accagcaggg ccgcctgaac tctcagaggc agaaggcaca
     2761 agagctggac cagctggaag cccagcttga gacccagctg caggaagctg agcagaccct
     2821 tatctcggag ctggcgacat tggcccgagt gccccttgct gagaacaagc cattctccaa
     2881 caagcgaggc ctgccagaga agccggtaag gaccaaaagg aagaagcccc cacctcggga
     2941 gagagaggac ctggggctac caaacgatga ccaccctgcc ttggccgacc actccacagg
     3001 accactcagg acttccagaa tcaagtgatt cctagccaag aaacaaaagc aaaaggatcc
     3061 cactcctcaa tggattcgag gacactggag gagaaggaag ctggatcccc aaggatccac
     3121 acaatggcaa gactgagggt ttatactgta ttggtcatcg atcagtcctt ctgaatgaag
     3181 ttcaactttt ttttgaagat tcatttattt tatttaaatg agtacactgt agctgtcttc
     3241 agacacacca gaataagcca ttgggttcca ttacagatgg ctgtgagcta ccatgtggtt
     3301 actgggaatt gaactcaaga cctctgggag agcagtcagt gctcttaacc actgagccat
     3361 ctctccagcc cagagttcaa catttttaac ctgaagacat gctcatatct aagttggaag
     3421 tgtggtttgt ccagtaataa aatataaagc ctttcaaaaa ttaataaaat attcagtttt
     3481 tttttaaaag tttaaatcct ctctaaaata tctgaagctt ttttagaata tctaaagtct
     3541 cgcacatgtc agaacggcta agatcaatac cataagtgac agctcatgat ggcaaggtta
     3601 agaagcaagg gaaacaccct cctccactgc tggtgggagt acaaacttgt acaaccaccg
     3661 tggaaatcaa tgtggcagtt cctggggaaa ctgggacttg atctatccca agacccagcg
     3721 ctgttctgtg taccggaaac catctgcaga gatctgcaga gctctggcca ggttggagca
     3781 gctaaagagt tgtgctcttc aaaggggagg tagagttgat cttccatggc cactgctact
     3841 ctggagcagc aagagtctac atggtgggtc agcacgaaac tgctggatct gttccgaggc
     3901 ccctacatgg agctgtcaag ggattggagc tcgattagcc tgcaggagag aattctcttc
     3961 cccaaaagtt ttacagctct tataggacag acattctcaa actttctttg acgaaataat
     4021 cctcgaactt tattccttct ggacaggacc ttatacattt tggggtgggg tgggatctaa
     4081 aagcagatgc tttctattga gtttggttga gatttaacaa tgcctcatct gcatgtggag
     4141 gggcttcagg cactgcccct atgtgactgc ttgtcacagt cctctctcca tggagtgccg
     4201 tagtcacgtg ttccaggaca gaaaactggt caggtgtagt tttaattatt tcaaacctta
     4261 tttttaatga tggttcttaa atgctttaac ctcccttgta gcccat
//
