LOCUS       XM_039107693            3201 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ETS variant transcription factor 6
            (Etv6), transcript variant X2, mRNA.
ACCESSION   XM_039107693
VERSION     XM_039107693.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039107693.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3201
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3201
                     /gene="Etv6"
                     /note="ETS variant transcription factor 6; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 20 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:312777"
                     /db_xref="RGD:1559537"
     CDS             1816..2553
                     /gene="Etv6"
                     /codon_start=1
                     /product="transcription factor ETV6 isoform X2"
                     /protein_id="XP_038963621.1"
                     /db_xref="GeneID:312777"
                     /db_xref="RGD:1559537"
                     /translation="MIRRLSPAERAQGPRLQQENNHQESYPLSVSPMENNHCPPSSES
                     NPKPSSPWQESTRVIQLMPSPIMHPLILNPRHSVDFKQSRISEDGMHREGKPINLSHR
                     EDLAYMNHIMVSVSPPEEHAMPIGRIADCRLLWDYVYQLLSDSRYENFIRWEDKESKI
                     FRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLFRFMKTPDE
                     IMSGRTDRLEHLESQELDEQAYQEDEC"
ORIGIN      
        1 gctctgattg gctcctttca gattctgccc cttaggctct tctttgtttt aaggcggggt
       61 ctcatataac tcaagctggc ctctaactca ccctgtagcc aaggatggcc ttgaatacag
      121 ctacccattt ccatccctga tttatttaat gttggggatc aagctcaggg ctgtgtgcgc
      181 gttgggtgag cactctgact aaactacctc taagctcccc ttgatttatt tgaggaacta
      241 attttgtttt tcctgcacgt atgtgtatgt ataaccaatg tctacagagg ttccctcaga
      301 actgaggtta gagatggttg tgaaccatgt gggtactgag aactgaacac ccatcctctg
      361 caaaagtagc aagtgttctt acccactgag ccatctctcc agctgtcacc ccactcttgc
      421 accctgattc cttagatggc ccctttgggc tgctgttttg aagctgagag agacctctct
      481 actctgccac tgactagcct gcgaacatgt ggatgatcta tgctggccca ctggaagaga
      541 caacccactt gcaggcagca tctacctggc ctgagggaag atcggtgaac cgtttcgttt
      601 ccttcagccc atgttatcaa gtgcttatga gaagtccagg gtttgttatt tatcaagcta
      661 tcccctccaa tcaagataat ttacttctta ggccctaaag gggaattcaa gttgagatga
      721 ccaggtaaaa ggtcagtaga tggtctccaa ccaagcagaa attgaacctt gaagaaaagg
      781 aatgggggcc aaggaggcat agcattctgc taggctgctg taacaaacac caacactaga
      841 cagctgtcga cacagcacgt cagtatgtcc cgctctggac gccctcggtc agggttggtt
      901 tccgtgaaag ctgaggggag gaggacctgg tccaagactc agacttagct acagaagcct
      961 ggtgggcagt taatccatag tattgcttgt cttggaggtc ctgtcttcct gtgtgcatgt
     1021 gtccatgtcc acaacctcct ttttataagg ggaccagaca tactgaataa taaatactgc
     1081 cttcagtttc ccctctgtta atgttagaag caccctgacc cagaacactg gcactggaga
     1141 gacggattaa gatcgcatgc cgttcttcca gaagagccac cagattcagt tcccagcacc
     1201 catgtgacag atagcaactg tgtctgtaac acccatccca gagacttccg tcagcactgc
     1261 atgtacctgg ttcacaggca aacatgcagt cagaacacac gtacacataa ataaacataa
     1321 ccaccaccga ggggagtaaa gggttcattt cagcttacag gttacatttc catcactgaa
     1381 ggaagtcata gatggaactt tgtgcacaaa gtgtggcaag gcagtcaccg ggagcctcta
     1441 ccatcagaca actctgtgga gcctctgcca tcagacaact ctgtggagcc tctgccatca
     1501 gacaactctg tggagcctct gccatcagac aactctgtgg agcctctgcc atcagacaac
     1561 tctgtggagc ctctgccatc agacaactct gtggagcctc tgccatcaga caactctgtg
     1621 gagcctctgc catacagttt gctcactttt ctgaataatt gtgtccagag gacgcccagg
     1681 acgccagcgg agagcctgca ccacaaccct cccactattg aactcttaca tcgccccagg
     1741 tcacccatca ccacaaacca caggccttct ccggacccag agcagcagcg gcccctgcgg
     1801 tcccccctgg acaacatgat ccgccgcctc tcgcctgcag agagagccca ggggccaagg
     1861 ctacagcagg aaaacaacca ccaggaatcc taccccctgt cagtgtctcc tatggagaat
     1921 aatcactgcc caccgtcctc ggagtccaac ccgaagccct caagcccctg gcaggagagc
     1981 acacgagtga tccagctgat gcctagcccc atcatgcacc ccttgatcct gaacccccgg
     2041 cactcggtag atttcaaaca gtcccgaatc tctgaagatg ggatgcatcg ggaagggaag
     2101 cccatcaacc tgtctcaccg agaggacctg gcttacatga accacatcat ggtctctgtg
     2161 tccccacccg aagagcacgc catgcccatt ggaagaatag cagactgtag actgctttgg
     2221 gattacgtct accagttgct ctctgacagc cggtacgaaa acttcatccg atgggaggac
     2281 aaggaatcca aaatattccg gatagtggat cccaacggac tggctcgact ctggggaaac
     2341 cataagaata ggacaaacat gacctatgag aaaatgtcca gagctctccg tcactactac
     2401 aaactaaaca tcatcaggaa ggagcccgga caaaggcttt tgttcaggtt catgaaaacc
     2461 ccggatgaga tcatgagtgg ccggacagac cgtctagaac acctcgagtc tcaggagctg
     2521 gatgaacaag cgtaccaaga ggatgaatgt taagggaacc taccacagcc tcagcggtgg
     2581 gctggccaag acgagacctg cccacaggga ccgcaggagg catgatggag caggcaagct
     2641 agggatggct tgaaaggaag agacccagga atagcaggaa cacttctcct gcagatcaag
     2701 agggacccag agcaccttag acaagccacc cagcaatggc agggctggaa ttctggcgga
     2761 gggcacaagc ctgagacaca cgtcatgttt gctcctcctt cgactctctt gtctgtaaag
     2821 cctcaccctc accctgcacc tgttgttagt ctcatggtgt ttctggtttt gttttcgttt
     2881 cttttttttt ttaagaacat gcagtttgac tattcattgt tcatacaggg aagacatcac
     2941 atgttgcttt cctatggaaa tatatctatt atatatatta ttaatttttt tttcgttgtt
     3001 gcaaatctca ccaagtacga ccagctctgc tggtcaggaa aaagaaaact tgcagaagag
     3061 atcaggttcc tctttttcct gccgcataga tctggtttgt cctatccaag tcaggtcttt
     3121 gatgagaaag gaaaacaaaa aaaaagagag agagagaaat agcttccaaa aatgaaaaag
     3181 aagagttctg tctccatctc c
//
