LOCUS       XM_008768086            2341 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ETS variant transcription factor 4
            (Etv4), transcript variant X3, mRNA.
ACCESSION   XM_008768086
VERSION     XM_008768086.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008768086.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008768086.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2341
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2341
                     /gene="Etv4"
                     /gene_synonym="Pea3"
                     /note="ETS variant transcription factor 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 2 long SRA reads, 11 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 32 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:360635"
                     /db_xref="RGD:1306524"
     CDS             165..1748
                     /gene="Etv4"
                     /gene_synonym="Pea3"
                     /codon_start=1
                     /product="ETS translocation variant 4 isoform X3"
                     /protein_id="XP_008766308.1"
                     /db_xref="GeneID:360635"
                     /db_xref="RGD:1306524"
                     /translation="MLSIPPRLLHRRPDLSAPGTVCELPPPSQVSASARGPGPVAGGS
                     GRMERRMKGGYLDQRVPYTFCSQKSPGNGSLGEALMVPQGKLMDPGSLPPSDSEDLFQ
                     DLSHFQETWLAEAQVPDSDEQFVPDFHSENLAFHSPTTRIKKEPQSPRTDPALSCSRK
                     PPLSYHHGEQCLYSRQIAIKSPAPGAPGQSPLQPFSRAEPQQSLLRASSSSQSHPGHG
                     YLGEHSSVFQQPVDMCHAFTSPQGGGREPLPAPYQHQLSEPCPPYPQQSFKQEYHDPL
                     YEQAGQPAASQGGVSGHRYPGAGVVIKQERTDFAYDSDVPGCASMYLHPEGFSAPSSG
                     DGVMGYGYEKSLRPFPDDVCIVPEKFEGDIKQEGVGAFREGPPYQRRGALQLWQFLVA
                     LLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGI
                     MQKVAGERYVYKFVCEPEALFSLAFPDNHRPALKAEFDRPVSEEDTVPLSHLDESPAY
                     LPELAGPAQPFGHKGGYSY"
ORIGIN      
        1 gcgagaacgg aggccaaggc aaaggaaatg caccaatcag ctgctccccg gggctcacaa
       61 ctgtctgctg cgcccggaaa acaagccggg gctctgggga cccggggctc aggccgcctc
      121 gctcaggcct agccccgcca ctttagttgt gtcatccccc gggcatgctg agcatccccc
      181 cacggctcct gcacagacgc cccgacctca gcgctcccgg gaccgtgtgc gaactgcctc
      241 ccccctccca ggtctctgcc tccgcgcggg ggcccggccc tgtggccgga gggagcggcc
      301 ggatggagcg gaggatgaaa ggcggatact tggaccagcg agtgccctac accttctgca
      361 gccagaaatc tcccggaaat gggagcttgg gcgaagcgct gatggtcccg caggggaagc
      421 tcatggaccc gggttccctg ccgccttccg attcagaaga tctcttccag gatctcagtc
      481 acttccaaga gacgtggctc gctgaagctc aggtaccgga cagtgatgag cagtttgttc
      541 ctgatttcca ttcagaaaac ttagctttcc atagccccac caccaggatc aagaaggaac
      601 cccagagtcc ccgcacagac cccgccctgt cctgcagcag gaagccgcca ctctcctacc
      661 accatggaga gcagtgtctt tactccagac aaatcgccat caagtccccc gcccccggag
      721 cccctggaca gtcgcccctg cagccctttt ccagggcaga accacagcag agtctcctga
      781 gagcctccag ctcttcccag tcccaccctg gccacgggta ccttggtgag cacagctccg
      841 tcttccagca gcccgtggac atgtgccatg ccttcacatc tcctcaggga gggggccggg
      901 aacctctccc agccccctat caacaccaac tatcggagcc ctgcccaccc tacccccagc
      961 agagcttcaa gcaggagtac catgaccccc tgtatgaaca ggctggccag ccagctgcga
     1021 gccagggtgg ggtcagtggg cacaggtacc caggggcggg ggtggtgatc aaacaggagc
     1081 gcacagactt cgcctacgac tcagatgtcc ctggatgtgc atcaatgtat cttcacccag
     1141 agggcttctc tgcaccctct tcaggtgatg gagtgatggg ttatggctat gagaaatctc
     1201 ttcgaccatt cccagatgat gtctgcattg tccctgagaa attcgaagga gacatcaaac
     1261 aggaaggggt tggagctttc cgggaggggc caccctacca gcgccggggt gccttacaac
     1321 tgtggcagtt tctggtggcc ctgctggatg acccaacgaa tgctcacttc attgcttgga
     1381 caggccgggg aatggagttt aaactaattg aacctgaaga ggtcgccagg ctctggggca
     1441 tccagaagaa ccggccagcc atgaattatg acaagctgag ccgctcactg cgatactatt
     1501 atgagaaagg catcatgcag aaggtggctg gtgaacgcta cgtgtacaag tttgtgtgtg
     1561 agccagaggc cctattttct ctggccttcc cagataatca tcgtccagct ctgaaggctg
     1621 agtttgaccg gccagtcagt gaggaggaca cggtcccttt gtcccacttg gatgagagcc
     1681 ctgcctacct cccagaactt gctggccctg ctcagccctt tggccacaaa ggcggatatt
     1741 cttactaggc accagtgacc tccccttgca atggtggggt tgcctagtgt acataacaac
     1801 tgatttggta ttggtaaagc cctctttctg atacctgtag aagtctctgg ggtcagtgct
     1861 ccactatccc atctgatact cctggccaga ctcagctgct aaccagagtc tgcgggaaag
     1921 acagtggaca ggtcaagtct aaaggcagta actgaagttc gctgtggttc acctgtaccc
     1981 tcagttcagc ttggcttcgg cctaggtctt gctcaggggc caagttcccc acgccctcca
     2041 cagagaacca gtgttctgtt ctggggacag ataaggggct ttctgtgttt attatggcag
     2101 cagggccaag gggatcctca gaacaccctg tcttccccct cagcccctga gggagacaaa
     2161 gttctgccct gggctggggt cctgtgttct tggtgctgtg ctctgggagg caggagcaca
     2221 tggaggcagc tgggggtggg gagtgttggg tggaggcagg gacagctctc tgccctaggc
     2281 ctacccaggt ccagttccac cttcgcctca tctgccagac cttaataaag cctctgcttc
     2341 t
//
