LOCUS       NM_001395641            2017 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus ETS variant transcription factor 3 like (Etv3l),
            transcript variant 1, mRNA.
ACCESSION   NM_001395641
VERSION     NM_001395641.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2017)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.12708.1,
                                           SRR26360181.2425487.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-432               JAXUCZ010000002.1  175289513-175289944
            433-531             JAXUCZ010000002.1  175295633-175295731
            532-769             JAXUCZ010000002.1  175295808-175296045
            770-959             JAXUCZ010000002.1  175296254-175296443
            960-1071            JAXUCZ010000002.1  175296856-175296967
            1072-2017           JAXUCZ010000002.1  175301374-175302319
FEATURES             Location/Qualifiers
     source          1..2017
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..2017
                     /gene="Etv3l"
                     /gene_synonym="RGD1562620"
                     /note="ETS variant transcription factor 3 like"
                     /db_xref="GeneID:499651"
                     /db_xref="RGD:1562620"
     exon            1..432
                     /gene="Etv3l"
                     /gene_synonym="RGD1562620"
                     /inference="alignment:Splign:2.1.0"
     CDS             378..1427
                     /gene="Etv3l"
                     /gene_synonym="RGD1562620"
                     /note="isoform 1 is encoded by transcript variant 1; ets
                     variant gene 3-like; ETS translocation variant 3-like
                     protein; ets variant 3-like"
                     /codon_start=1
                     /product="ETS translocation variant 3-like protein isoform
                     1"
                     /protein_id="NP_001382570.1"
                     /db_xref="GeneID:499651"
                     /db_xref="RGD:1562620"
                     /translation="MDLQRPHRELRRKHRKQPSLQSKLNPLLPPTMYCNCFSEGIRAA
                     PVNYWISGLAFPDWAYKAESSPGSRQIQLWHFILELLQKEEFRHVIAWQQGEYGEFVI
                     KDPDEVARLWGRRKCKPQMNYDKLSRALRYYYNKRILHKTKGKRFTYKFNFSKLIVAD
                     CPPWKVWTPSTPCLLLRPPALCQTALVPVAEQSEPLRSMLCTRATGTQPARERTPPQP
                     PEASGDKDSSSFSSFGSVLGPGWQNPCCCFWNHQGDLPSFASFAPVPCLCCNWAHLSG
                     PILPPLSSEQPLLESLKPGPRLPGPMWMPGAWHFPGLHLLARLRQGTEAPEVPQAPGI
                     GGKSWPRAKQAPGFQ"
     exon            433..531
                     /gene="Etv3l"
                     /gene_synonym="RGD1562620"
                     /inference="alignment:Splign:2.1.0"
     exon            532..769
                     /gene="Etv3l"
                     /gene_synonym="RGD1562620"
                     /inference="alignment:Splign:2.1.0"
     exon            770..959
                     /gene="Etv3l"
                     /gene_synonym="RGD1562620"
                     /inference="alignment:Splign:2.1.0"
     exon            960..1071
                     /gene="Etv3l"
                     /gene_synonym="RGD1562620"
                     /inference="alignment:Splign:2.1.0"
     exon            1072..2017
                     /gene="Etv3l"
                     /gene_synonym="RGD1562620"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 taacacccta ccctagggca gtagtgagct cacccagctt aactgtttgc tggaactttc
       61 atctcctgcc ggccttgccc tgctgcccct tagtgcgcca cctgggattt cttgttcctg
      121 atggggagtc taagggccag ggtggaggtg ttcaggagga tcccctaagg aaggttagat
      181 aagagtatga tgaatgagac cagcgctgtg ggaagagagc gagtgctgga ggcagttgtg
      241 gaaagggagc agcccagggt agagagaaac agaaaaggac aagaggcaaa agtggcaagg
      301 ccagccatca cagaacaggg ctgggtgatg ggtggtgaaa ctgagaccca gagagaccag
      361 ccatcccgga agagagaatg gatctccaaa ggccacacag agagctgagg aggaagcaca
      421 ggaaacaacc cagccttcag tccaaactca accctctcct accacccacc atgtactgca
      481 actgcttctc ggaaggcatc cgggctgccc ctgtcaacta ctggatctca ggtctggcct
      541 tcccggattg ggcctacaaa gccgagtcgt cgccaggttc ccggcagatc cagctgtggc
      601 acttcatcct ggaactgctg cagaaggaag agttccgcca tgtcatcgcc tggcagcagg
      661 gagagtacgg ggagtttgtc atcaaggatc cagatgaagt ggctcgcctc tggggccgca
      721 ggaagtgcaa accacagatg aactatgaca agctgagccg ggccctcagg tattactaca
      781 acaagaggat cctgcacaag accaaaggca agaggtttac ctacaagttc aactttagca
      841 agctcattgt agccgactgt cctccatgga aagtgtggac accctccacc ccttgcctgc
      901 tgttgaggcc ccctgccctt tgtcagacag ccttggtacc tgtggctgag cagagtgagc
      961 cccttcgtag catgctgtgc acacgggcca caggaactca gccagctcga gagagaaccc
     1021 caccgcagcc accagaggcc tctggggaca aggacagcag cagcttcagc agctttggct
     1081 ctgtcctggg cccaggttgg cagaaccctt gctgctgttt ctggaaccac caaggtgatc
     1141 tgcccagctt tgcttccttt gctcctgtgc cctgcctctg ctgtaactgg gcccacctct
     1201 cagggcccat cttgcctcct ctttcctcag agcagccact tttggagtcc ttaaagcctg
     1261 gtcctcggct ccccggcccc atgtggatgc caggtgcctg gcattttcca gggctacacc
     1321 ttctggccag gctgagacag ggcactgaag cccctgaagt tcctcaggcc ccgggaattg
     1381 gtggtaaatc ctggcccagg gccaagcagg cacctggatt ccaatgaggg actctcctta
     1441 gcgactcggg gactcaaact tggaaaagga atccctatgc ccccaatcca gagaacatga
     1501 tagccatgtg gccttcggat cccccttaat cctgccccca ctttgtatca ctggaggacc
     1561 caaagggtga agctgaacca aggaaggtca aatgtgggcg tgaggaaaca gaggtggtgc
     1621 tcctccccta ctagcaaatt gctatcagat aaaggagaca ttgttaacta aattctttaa
     1681 tttttttttg gaaagaaatg agattaaggg tttctgtcac taaaattgtc tcatgcctac
     1741 ccccaagagg aaatgaaggg gcttttggct tgagtcttag gtctctttct ccctctccgc
     1801 tcattcccca ccctggctaa ggtttcctgg acccttccca caccttcaca tatttctctg
     1861 tcctctgtca gctcagccac taggaacctc tgtcccaaga aagttcttga ttctgcctcc
     1921 atgaccccaa gctccaggca ggtgcagaga gcgggagggg ttggttcttg catctgtgta
     1981 atactccacc gctaactaaa taaaagtaat aaaaatg
//
