LOCUS       XM_006232620            5265 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ETS variant transcription factor 3
            (Etv3), transcript variant X1, mRNA.
ACCESSION   XM_006232620
VERSION     XM_006232620.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006232620.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006232620.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5265
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5265
                     /gene="Etv3"
                     /gene_synonym="Spap1"
                     /note="ETS variant transcription factor 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 52 ESTs, 4 long SRA reads, 18 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 210 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:295297"
                     /db_xref="RGD:1311577"
     CDS             159..1700
                     /gene="Etv3"
                     /gene_synonym="Spap1"
                     /codon_start=1
                     /product="ETS translocation variant 3 isoform X1"
                     /protein_id="XP_006232682.1"
                     /db_xref="GeneID:295297"
                     /db_xref="RGD:1311577"
                     /translation="MKAGCSIVEKPEGGGGYQFPDWAYKAESSPGSRQIQLWHFILEL
                     LQKEEFRHVIAWQQGEYGEFVIKDPDEVARLWGRRKCKPQMNYDKLSRALRYYYNKRI
                     LHKTKGKRFTYKFNFSKLVMPNYPFINIRSSGVVPQSAPPVPTASSRFHFPPLDTHSP
                     TGDVQPGRFSASSLSASCPESGGAADRKVEPSDLEDGSASDWHRGMDFMPSRNALSGG
                     VIGHQKRKPDIMLPLFTRPAMYPDPHSPFALSPVPGRGGVLNVPISPALSLTPTMFSY
                     SPSPGLSPFTSSSCFSFNPEEMKHYLHSQACSVFNYHLSPRTFPRYPGLMVPPLQCQM
                     HPEESSQFSIKLQPPPAGRKNRERVESSEETTRGSVPASTPIPSRIKVEPATEKDPDS
                     LRQSTQEKEEQAQEVDTVQTRTIEEGKGTVFAHPSPTWPSVSISIPSDEPLEVTEDSE
                     DRSAREPGVPEKKEDALMPPKLRLKRRWNDDPEARELSKSGKFLWNGAGPQGLATAAT
                     AAADA"
ORIGIN      
        1 gcggtgccgc tcacgacacc gccccctccc accctggccc agagtggaag tgacgaaagc
       61 cgccgcggag tcacttcctt ctgggtggat gaggaggagc ccgagctgcc gcggaggagc
      121 ccgagtggag acggacggcg ccggagagga gggcaaaaat gaaagcaggc tgtagcatcg
      181 tggaaaagcc agaaggaggt ggagggtatc agttcccgga ttgggcctac aaagccgagt
      241 cgtcgccagg ctcccggcag atccagctgt ggcacttcat cttggaactg ctgcagaagg
      301 aagagttccg ccatgtcatc gcctggcagc agggagagta cggggagttt gtcatcaagg
      361 atccagatga agtggctcgc ctctggggcc gcaggaagtg caaaccacag atgaactacg
      421 acaagctgag ccgggccctc agatactatt acaacaagag gatccttcat aagacaaaag
      481 ggaaaaggtt tacttacaag ttcaacttca gcaagctggt gatgcccaac taccctttca
      541 tcaacatccg ctcaagtggt gtggttcctc agagtgcacc accagtgccc acagcctctt
      601 cccggttcca tttcccacct ctagacaccc attctcctac tggtgacgtg cagccagggc
      661 gcttctctgc tagctccctg agtgcttctt gccccgagtc aggtggggcc gctgatagaa
      721 aggtggagcc ttcggacctg gaagatggct cggcctctga ttggcaccgg ggcatggatt
      781 tcatgccctc tcgaaatgct ctcagtggag gagtaatcgg ccaccagaaa cgcaagcctg
      841 acataatgct tcccctcttc actcggccag caatgtaccc tgacccccac agtcccttcg
      901 ctctctctcc agtccctggc cgaggaggtg tccttaatgt ccccatttca ccagccctgt
      961 ccctgactcc cactatgttc tcctatagtc cctcgccagg cctgagcccc ttcaccagca
     1021 gcagttgctt ctccttcaac ccagaggaaa tgaaacacta ccttcattct caagcctgtt
     1081 ctgtgttcaa ctatcacctg agtcctcgga cttttccccg ttacccaggg ctcatggtcc
     1141 caccactgca gtgccaaatg catcctgagg agtcttccca gttctctatc aagctgcagc
     1201 ccccaccagc tggaaggaag aaccgtgaga gggtagagag cagtgaggag accactcgtg
     1261 gctctgtgcc cgccagcact cctattccct ctcggattaa agtagaacca gccactgaga
     1321 aggatcctga cagcctcagg cagtcaaccc aagaaaagga ggaacaggcc caggaagtgg
     1381 acactgtgca gaccaggacc atagaagagg ggaaaggcac agtgtttgcc cacccgtcac
     1441 ccacctggcc ctctgtatcc attagcatcc ccagtgacga acccctagaa gtgactgaag
     1501 acagtgagga caggtctgcc agggagcccg gtgtacctga gaagaaagaa gatgccctga
     1561 tgccccctaa gcttcggctg aagaggcggt ggaacgatga ccctgaagcc cgggagctca
     1621 gcaaatcggg caagttcctc tggaatgggg caggacccca gggcctggct acagcagcca
     1681 ctgctgccgc tgatgcttaa agccacagtg gaagggaagc tgttgatact acaatcagaa
     1741 tacatattta tgtagcaaga ttctggggtg ggaggtgggg tgaggctggt ttggtaattc
     1801 tggggtgtgg acttgtactt ttctgttggg gatgggacaa gtatcttgag ttgtatatta
     1861 agtggggtat gaacacactt ttttcttggt acgtaggaca tagggaggct gttgaacttt
     1921 atgggcagga gcccagttcc tgttccctca tgcacctgac aagctccaca agggcccaca
     1981 tactttgtag tcagtcccat cacagttcag gctctgtagt ctcttctatt gtatttatac
     2041 aatacataat gggaaagccc ataatgggat attcttcttt gagagagaaa gagagaaaag
     2101 gaaaaggctg gaaggctagg tggtgagaaa aatgctaagc atgttacctg agtatttatt
     2161 tcaggagaga aaagagttaa ttgcagtctt actgaagtgg ggacatttag atggtgttct
     2221 ctgctctcct ctctcccctt ctccctcact ggagagagag agagagtgtg tgtgtgtaca
     2281 catgtgtgtg tacacgtacg tgatcacaca caggcgtgca cgagcacaca cacacataca
     2341 taaacacata cacacactct ctcatgcatg cactctctct ttttctctcc ctggggggag
     2401 ggtgacacat gcacatttgg ctccccccac acctttttag aaaatgtttt caagacacat
     2461 gagtgtactg ccatttaaaa tgggcaggga gggcacagga gacccccacc ccctggcccc
     2521 tcagcttcag agttgaggtg ggaaggcagc atggctgcaa ggtccttgga ctttcacctt
     2581 cttcacctat caaaaagcca tgaggagttg aaaactcttg atcagggaag aaagaagagg
     2641 gcaggaggaa gtaacccaat gcctttaaaa acaaatgaca gaaatagtct tcatttttct
     2701 ttttccattg ttggtttggt ttcccaaacc aagtgtgatt gagcacgttt tatgaggagc
     2761 aggatagcgc cattgaagat gcttttctgt tgtgtctggt tgtcttactg ttttcttaag
     2821 tcaagcctta actttgaaca tgctttaaga tgatacgggt ctgacagcat aaacctgtga
     2881 agggcatgac actgttcaga tagcccagga atgttgaggc acagtcgaat tcctagctaa
     2941 tagttatccc ctccgatgtt gccggtccgg tggcaaaagg gcaggattgt gggaatgaaa
     3001 ggcagatatc atctgtaaac acaagtactg ctgttgaaac tgaagagagg taggaaggtg
     3061 gtaccagagg ccataaggtc tggtgtgagg gaaagagctg gtatctggcc tgtgatgtgt
     3121 tgccggccct gtggtcccca tttgcccaga tcgttctgat cggttgacta ttcccaaaat
     3181 acagttcacc gacaggagtc gtttcttctt gggaaattcc cttacagcaa cttcaaagga
     3241 atggaaaggt actgatctta ggtgaaacaa aacagaagca ttagggtaga gagaaagcgg
     3301 caacagccaa gtgcctctgt gcacatgtgt gctctgagta gctcaaagca gcaagaagaa
     3361 atggttccat atttgctgag gcaagggatg gcattcaggc atcagaatga taactctacc
     3421 acctgagcct ggctgggaat tctacaccaa gtgacatttg agtgttgtct tttgatggct
     3481 tgtttgggtt tgatttagtt tggttttatt ttctttaact gaagtgcgtg cacagaagga
     3541 gctcaggaga cagaactggt gaaagagatg ttagctgact tggacgactt gaggctgtca
     3601 ttgctatttc ttgatgaatg tcctataagt tggtccagat tccatgcatg tgtgaaaggc
     3661 caggaaaggt ctctggtgac ccaggctttg gttgggccac aaaggcttca gcactcctgc
     3721 tgcctttggt ggttgtgttt tgatcagctt ccttctctgc accttgatgg acctcagaat
     3781 cagaaggcaa gcccagcagg aggtagagga gggctctctg gttggtgttg cccatccaac
     3841 cagggatgct agctggccac cggttgtctg ctagtgggga cagccagcga gcatcagtgt
     3901 gaactcagga atagaaacat ggggccttta aaatgagagg aggaaaatcc atgatgcata
     3961 tctgtaatcc cctagaaccc aagtgccgga attcattcta gatgctgctt ctgtttgaat
     4021 aaagccactg cttttacact tgaaattgaa ctccatgaaa aatgcttttg gacttttatg
     4081 aaactatttg ctgtttgttt cctttgattg ccattccacc agtaatttct tggttgattg
     4141 gaactgcaca cagttggagt ttggacctgg ggaagggtct gtctgcagag cagaactcgg
     4201 gcttgctcag gaagtggacc aggaaatgta gtgatcactg atacttcctg gggcaaagga
     4261 atgagaatgc tcttctctcc ccagccccgt cctggcagtt cctgcctcca gcctggtatg
     4321 aaacaaggca gttgccttct atgagcactc cattgtccag cagacaggtg aaggggacta
     4381 aagctggacc tacttcctct ccctgggttg tttttcccct ctaaattttg ttgtgccaaa
     4441 tgtataaaag tttgtaggtg taaatctatt gaaatttcac taatcaagag cttgtttatt
     4501 taaacagttt gcttttttag ctgtaaagag tagcaaattc tcagggcatc agcactgctg
     4561 agctcttttt tttttttttt tctgaagtaa atagagacat gtagagtctt ccctccatgt
     4621 caggctgcac ttcattagcc ccagctcagt aatgcaggga accctagtga cccatcggcc
     4681 aagaaactcc cagaagcatt aaaaaaaaag ttatattccg ctgccaagtg gatagtcatt
     4741 tagctgtttg tcccttgttt tttatttatt ccataattat gtttgtgctt tttcttgtgt
     4801 gaacagtagt gaggcgtatg tttttatgtg gctttagaga aaacttcagt cttcaaagaa
     4861 ctgttctaat tagttccttc tcggaaaaag ttatgcgtta atttgtttca aaatatttag
     4921 gcattctttg aattataaac ttgtgatgca gggatttgtg aacgagacgt tcacaagtga
     4981 agatgacttc acttagcatc tgtgtaaaca gaataagatg tgtatatgta cataaaatat
     5041 aaggagtctg aacaccattg tgcagtgcct tttagatgtt ctgctttcta aagtcttcaa
     5101 attttttgca tatatattat atatatgatg taatgttata gaaatatatg tataatatac
     5161 atattttttc caggggtatc tgatagctct gtattttgtt atggaagtcg aaagaaaaaa
     5221 aaagtatttt acctcaaaaa attaaagttc agtttaaaaa caaag
//
