LOCUS       XM_039093962            1945 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ETS variant transcription factor 2
            (Etv2), transcript variant X4, mRNA.
ACCESSION   XM_039093962
VERSION     XM_039093962.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093962.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1945
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1945
                     /gene="Etv2"
                     /note="ETS variant transcription factor 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 2 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:361544"
                     /db_xref="RGD:1310603"
     CDS             823..1929
                     /gene="Etv2"
                     /codon_start=1
                     /product="ETS translocation variant 2 isoform X1"
                     /protein_id="XP_038949890.1"
                     /db_xref="GeneID:361544"
                     /db_xref="RGD:1310603"
                     /translation="MDLWNWDEASVQEVPPGDKLTGLGKLLWLGTKWLQASKDADPLT
                     PKPALTSLLPAEGAEFGFYFPEVALQGDTPITPMNVESCWKGFPELDWNPALPHEEVP
                     FEAEPVAHPLPWSRDWTDLGCNTSDPWSCASQTPGPAPPGTSPSPFVGFEGATGQNTA
                     TSAGGVPSWSHPPATWSTASWDCSAGPNGSTYWDSGLGGEAQADYKMSWGGSAGSDYT
                     TTWNSGLQNCSIPFEGHQIPAFATPSKSSQQSDRATLTPYSKTNHRGPIQLWQFLLEL
                     LHDGARSSCIRWTGNNREFQLCDPKEVARLWGERKRKPGMNYEKLSRGLRYYYRRDIV
                     LKSGGRKYTYRFGGRVPVLACQDDMGHLPGAEGQ"
ORIGIN      
        1 gtccagcaac cacatggtgg ctcacaacca tctgtaatga gatctgatgc tctcttctgg
       61 tgtgtctgaa gacagcctca gtgtactcat atacattaaa taaatacaat atttaaaaac
      121 gatatctttc caaacctatc actgccgcac ataaaattat tccacgcaat aattcacatt
      181 cagttcatac tcaaaaatcc ccagttgttt gcgactgcta tagctcagaa agcccagaca
      241 gaaaaagcat gcctcagttt cccccttcat aaacttggga taaaaacatt tcccccttga
      301 gaagattaaa tgaaagtccg tttttgtgta tggcttctcg gaccggcaga cgctcattta
      361 acgttagtgg tttctattac tattattatc gcccatgatg atgttatttt gattatgatt
      421 gccattattc gatagtaatt ccaggacacc ctccctctgc ctggtaaggg attcagggtt
      481 ggattccccc accccactcc atctggctgt ctgtcaccct gccgattgtg acgtaggctg
      541 atgctaggga aagggggcat ctggccggaa atccctcttc ctgttgcaga taagcccaga
      601 gttgcccagc tgaccccaga ccctcctccc ccaccgcttt tcatgtctca ccaccaaatc
      661 ctcaagacgg ggaacctgtc caaacccctc accccatccc cactaccccg ccccccggga
      721 agggtgcatg gtatgaaatg gggctgagac cccccctggc aaggagagaa ggaacctgcc
      781 agagttttcc tctctcaacc agaaccgtca gaacaagcct ccatggacct gtggaactgg
      841 gatgaagcgt cagtgcagga agtacctcct ggagacaagc tgacaggact gggtaagctg
      901 ctgtggcttg ggacaaagtg gttgcaagct tccaaagatg cggacccctt gacccctaaa
      961 ccggccttaa catccttgtt gcccgcagaa ggagcggaat ttggtttcta tttccctgaa
     1021 gtggcactgc aaggggacac accgatcaca ccgatgaacg tagaaagctg ctggaaaggg
     1081 ttcccagagc tggactggaa ccccgcttta cctcacgaag aagtaccttt cgaggccgag
     1141 cccgttgctc acccccttcc gtggtcgcga gactggacag acctggggtg caacacctcg
     1201 gacccgtgga gctgtgcttc gcagacgcca ggccccgccc ctccgggcac gagcccctcc
     1261 cccttcgtcg gctttgaagg ggcgaccggc cagaatactg ccacctcggc aggaggggtc
     1321 ccctcgtggt cgcaccctcc cgccacctgg agcaccgcca gctgggactg ttctgcgggc
     1381 cccaatggat ccacctactg ggacagtggc ctgggcgggg aagcgcaggc ggactataaa
     1441 atgtcgtggg gcgggtctgc gggttcggac tacaccacca cgtggaatag tgggctgcaa
     1501 aactgcagca tccctttcga ggggcaccag attccagcat tcgccacgcc atccaaatcg
     1561 agccagcagt ctgatcgagc cacattgact ccctactcca aaactaacca ccgaggtccc
     1621 attcagttgt ggcagttcct cctggagctg ctccacgacg gggcgcgcag cagctgcatc
     1681 cgctggaccg gcaataaccg cgagttccag ctgtgcgacc ccaaagaggt agcccggctg
     1741 tggggcgagc gcaagaggaa gccgggaatg aattatgaga agctgagccg aggtctacgt
     1801 tactattacc gccgcgacat cgtgctcaag agcggtgggc gcaagtacac ataccgcttc
     1861 gggggacgcg tgcctgtcct tgcctgtcag gatgatatgg gacatctgcc gggtgcagaa
     1921 ggccaataaa agaaaaaaca aaaaa
//
