LOCUS       XM_039093960            2164 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ETS variant transcription factor 2
            (Etv2), transcript variant X2, mRNA.
ACCESSION   XM_039093960
VERSION     XM_039093960.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093960.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2164
                     /gene="Etv2"
                     /note="ETS variant transcription factor 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 2 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:361544"
                     /db_xref="RGD:1310603"
     CDS             1042..2148
                     /gene="Etv2"
                     /codon_start=1
                     /product="ETS translocation variant 2 isoform X1"
                     /protein_id="XP_038949888.1"
                     /db_xref="GeneID:361544"
                     /db_xref="RGD:1310603"
                     /translation="MDLWNWDEASVQEVPPGDKLTGLGKLLWLGTKWLQASKDADPLT
                     PKPALTSLLPAEGAEFGFYFPEVALQGDTPITPMNVESCWKGFPELDWNPALPHEEVP
                     FEAEPVAHPLPWSRDWTDLGCNTSDPWSCASQTPGPAPPGTSPSPFVGFEGATGQNTA
                     TSAGGVPSWSHPPATWSTASWDCSAGPNGSTYWDSGLGGEAQADYKMSWGGSAGSDYT
                     TTWNSGLQNCSIPFEGHQIPAFATPSKSSQQSDRATLTPYSKTNHRGPIQLWQFLLEL
                     LHDGARSSCIRWTGNNREFQLCDPKEVARLWGERKRKPGMNYEKLSRGLRYYYRRDIV
                     LKSGGRKYTYRFGGRVPVLACQDDMGHLPGAEGQ"
ORIGIN      
        1 gtccagcaac cacatggtgg ctcacaacca tctgtaatga gatctgatgc tctcttctgg
       61 tgtgtctgaa gacagcctca gtgtactcat atacattaaa taaatacaat atttaaaaac
      121 gatatctttc caaacctatc actgccgcac ataaaattat tccacgcaat aattcacatt
      181 cagttcatac tcaaaaatcc ccagttgttt gcgactgcta tagctcagaa agcccagaca
      241 gaaaaagcat gcctcagttt cccccttcat aaacttggga taaaaacatt tcccccttga
      301 gaagattaaa tgaaagtccg tttttgtgta tggcttctcg gaccggcaga cgctcattta
      361 acgttagtgg tttctattac tattattatc gcccatgatg atgttatttt gattatgatt
      421 gccattattc gatagtaatt ccaggacacc ctccctctgc ctggtaaggg attcagggtt
      481 ggattccccc accccactcc atctggctgt ctgtcaccct gccgattgtg acgtaggctg
      541 atgctaggga aagggggcat ctggccggaa atccctcttc ctgttgcaga taagcccaga
      601 gttgcccagc tgaccccaga ccctcctccc ccaccgcttt tcatgtctca ccaccaaatc
      661 ctcaagacgg ggaacctgtc caaacccctc accccatccc cactaccccg taagcacccc
      721 ttagatctca gtacccccat ccctgcctta cccttgttcc ccaagtcctt ttccaagccc
      781 aatttgtccc tgcaaaagga ccgttccagg gaccaatgcg catccctaaa gcagggggtg
      841 caacttgacc acgcccccat ccctgcaact tgacccaggc tgcgaccccc agctctgacg
      901 tctcggaaaa ttccccctcc cctatcaggc cccccgggaa gggtgcatgg tatgaaatgg
      961 ggctgagacc ccccctggca aggagagaag gaacctgcca gagttttcct ctctcaacca
     1021 gaaccgtcag aacaagcctc catggacctg tggaactggg atgaagcgtc agtgcaggaa
     1081 gtacctcctg gagacaagct gacaggactg ggtaagctgc tgtggcttgg gacaaagtgg
     1141 ttgcaagctt ccaaagatgc ggaccccttg acccctaaac cggccttaac atccttgttg
     1201 cccgcagaag gagcggaatt tggtttctat ttccctgaag tggcactgca aggggacaca
     1261 ccgatcacac cgatgaacgt agaaagctgc tggaaagggt tcccagagct ggactggaac
     1321 cccgctttac ctcacgaaga agtacctttc gaggccgagc ccgttgctca cccccttccg
     1381 tggtcgcgag actggacaga cctggggtgc aacacctcgg acccgtggag ctgtgcttcg
     1441 cagacgccag gccccgcccc tccgggcacg agcccctccc ccttcgtcgg ctttgaaggg
     1501 gcgaccggcc agaatactgc cacctcggca ggaggggtcc cctcgtggtc gcaccctccc
     1561 gccacctgga gcaccgccag ctgggactgt tctgcgggcc ccaatggatc cacctactgg
     1621 gacagtggcc tgggcgggga agcgcaggcg gactataaaa tgtcgtgggg cgggtctgcg
     1681 ggttcggact acaccaccac gtggaatagt gggctgcaaa actgcagcat ccctttcgag
     1741 gggcaccaga ttccagcatt cgccacgcca tccaaatcga gccagcagtc tgatcgagcc
     1801 acattgactc cctactccaa aactaaccac cgaggtccca ttcagttgtg gcagttcctc
     1861 ctggagctgc tccacgacgg ggcgcgcagc agctgcatcc gctggaccgg caataaccgc
     1921 gagttccagc tgtgcgaccc caaagaggta gcccggctgt ggggcgagcg caagaggaag
     1981 ccgggaatga attatgagaa gctgagccga ggtctacgtt actattaccg ccgcgacatc
     2041 gtgctcaaga gcggtgggcg caagtacaca taccgcttcg ggggacgcgt gcctgtcctt
     2101 gcctgtcagg atgatatggg acatctgccg ggtgcagaag gccaataaaa gaaaaaacaa
     2161 aaaa
//
