LOCUS       XM_006240050            6260 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ETS variant transcription factor 1
            (Etv1), transcript variant X5, mRNA.
ACCESSION   XM_006240050
VERSION     XM_006240050.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006240050.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6260
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6260
                     /gene="Etv1"
                     /note="ETS variant transcription factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 39 ESTs, 7 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     36 samples with support for all annotated introns"
                     /db_xref="GeneID:362733"
                     /db_xref="RGD:1312007"
     CDS             355..1668
                     /gene="Etv1"
                     /codon_start=1
                     /product="ETS translocation variant 1 isoform X5"
                     /protein_id="XP_006240112.1"
                     /db_xref="GeneID:362733"
                     /db_xref="RGD:1312007"
                     /translation="MLQDLSAGVFFPPCSQHRTLAQVPDNDEQFVPDYQAESLAFHGL
                     PLKIKKEPHSPCSELGSACSQEQPFKFSYGEKCLYNVSAYDQKPQVGMRPSNPPTPSS
                     TPVSPLHHASPNTAHTPKPDRAFPAHLPPSQSIPDSTYPMDHRFRRQLSEPCNSFPPL
                     PTMPREGRPMYQRQMSEPNIPFPPQGFKQEYHDPVYEHTTMVGGAASQSFPPPLMIKQ
                     EPRDFAYDSEVPSCHSIYMRQESFLAHPSRTEGCMFEKGPRQFYDDTCVVPEKFDGDI
                     KQEPGMYREGPTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARR
                     WGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRP
                     LLKTDMERHINEEDTVPLSHFDESMTYMPEGGCCNPHPYNEGYVY"
ORIGIN      
        1 ctaaaagagc cacctcatgt gtcatgcata cattagagcc tttgatgagt ttgtctttag
       61 ggactctggg gctccactac ccagtgtcat cacaaattac caggagaaat tgcttccagc
      121 tcacaatcac atctgctttt ggcaagaact aatgcaccaa gacttcaggt tctaagcctc
      181 tgttcagatt ttaattgcaa ttgatcaggt ttatattatt gtacctcaag agacttccag
      241 ccagaagcgg ctggcttgct gtttccctta gagccgtgca tgtgattgtt tggtgctctg
      301 ctgaaggact tttctgatgg cagaaattag tttctctggg ctcatcagga cgggatgctt
      361 caagatttaa gtgcaggtgt cttctttcct ccttgctcac agcacagaac gttagctcag
      421 gtacctgaca atgatgagca gtttgtgcca gactatcagg ccgaaagttt ggcttttcat
      481 ggcctaccac tgaaaatcaa gaaagaaccc cacagcccat gttcagaact cgggtctgct
      541 tgcagccaag agcagccctt taaattcagc tatggagaaa agtgcctgta caatgtcagt
      601 gcctatgatc agaagccaca agtgggaatg aggccctcca atcccccaac accatccagc
      661 actccagtgt ccccactaca tcatgcatct ccaaacacag ctcatactcc gaaacctgac
      721 cgggccttcc cagctcacct cccgccttcc cagtccatac cagacagcac ctaccccatg
      781 gaccacagat ttcgccgcca gctttctgaa ccctgtaact ctttccctcc tttgccaaca
      841 atgccaaggg aagggcgtcc tatgtaccaa cgccagatgt ctgagccaaa catccccttc
      901 ccaccacaag gcttcaagca ggagtaccac gacccagtct atgaacatac caccatggtt
      961 ggcggtgcag ccagccaaag ctttccccct cctttgatga tcaaacagga acccagagac
     1021 tttgcatatg attcagaagt gcctagctgc cactccattt atatgaggca agaaagcttc
     1081 ctggctcatc caagcagaac agaaggctgc atgtttgaga agggtcccag gcagttctat
     1141 gatgacacct gtgtcgtccc ggagaagttc gatggggaca ttaagcaaga gccaggaatg
     1201 taccgggaag gtcccacgta ccagaggcga ggatcgcttc agctctggca gtttctggta
     1261 gctcttctgg atgacccttc aaattctcat tttattgcct ggactgggcg aggcatggaa
     1321 tttaaactga ttgagcctga agaggtggcc cgacgttggg gcattcagaa gaacaggcca
     1381 gctatgaact atgacaaact tagccgttct ctccgctatt attatgagaa gggaatcatg
     1441 caaaaggtgg ctggagaaag atatgtctac aaatttgtgt gtgacccgga agcccttttc
     1501 tccatggcct ttccggataa tcagcgcccc ctgctgaaga cggacatgga acgtcacatc
     1561 aacgaagagg acacggtgcc cctgtctcac tttgatgaga gcatgaccta catgccagaa
     1621 gggggctgct gcaaccccca cccttacaac gaaggatacg tgtactaacc taacagtcaa
     1681 gcaaggcacc ccgtgcttcg cctttttttt tttttcaaga tacagagaat ctccgaattc
     1741 tcttacaatg tttgttttat ttctgttgtt tgtattttac tttttaaata ataatacaaa
     1801 agggggcttt tcctgttgca ttattctatg gtctgccatg gactgcgcac tttatttgag
     1861 ggtgggtggg aataatctag acattcattc tttgtaacag gaagatggtg ggtgaacggg
     1921 cagagggagc tgagggattc ctttttactt aggcttggga tggggtccta caggttttct
     1981 gtatgatgaa gctatatcat gtttgttcga tttcttaata acgtaagata attttccctg
     2041 ggtatctacg gtacagttga tttcacgttg tgtaaatatc ttcttggaga ccatttgcct
     2101 tgggcatttc cccatcagta ctgagtctct gcaggtgtac aaaaaaaaaa aaaaaatcta
     2161 ctgtaaatgg cagtttcatg ttagaaatga ctgtttttgc acctcttgta aaaaaaagaa
     2221 aaaagaatat ttagcaattg catttgttgt tctttctgtt tcatactgct ttacagatga
     2281 cttgtagaga atgaccataa atgtgggcaa ttctctcaga agttgagtaa tccccataac
     2341 tgtaaatgag ggccacagtt ttggactctg gctctaactg agtcacaggc cagtagcatt
     2401 acatggatct ggtgtcatct tgctgttttg gtactacaag tactgtcttt taaatatgtt
     2461 gatgcccatt tcacttaaat aatgacattc atgatccttt ggaatcttca tgtaagtgtt
     2521 aaagctggga tcacaatgaa gcaaaaaaga aaaaagaaaa aaaaatgacc tgtctccttt
     2581 cactatcttc agtacataaa tacattattt aatcaataag aattaactgt actaaatcac
     2641 atattatgct gttctagtta cagccatcac tctttaagaa aaatatccac tacactaaat
     2701 aggtactata gtaattttta gacatggtac cattgatatg catctaaatg tttcactgct
     2761 gtgttctgtt gataacatat ataaatatta gataatgcta atgcttctgc tgctgtcttt
     2821 tctgtaatat tctctttcat gctgaattta ctatgaccat ttataagcaa tgcagttaac
     2881 tacagatagc atttcaggac aaaatagatg agtcaaacca tttattgctt aaaaaatagc
     2941 ttacaccacg gttacgctct aagcagcttt tatgcacatt gacaaatgaa gagtgagcct
     3001 gggcttgcta aaggaaactg tggaaacttt tgtaactttt ggtgaaatgc aacattgttt
     3061 atggactgtt aaagagtatg aggaagtcga tgtgtgacgt aagtgctggc actgatgctg
     3121 tccttcatct cctttggaca cgcctgtaaa tgtgattgga ttgtacggaa gaaaaattca
     3181 aacatctgag atttcaatgt ttcggccttg tttccatttt gtttgattgt ttgtttgttt
     3241 tattgtacac tctaaaacaa cagcattgaa catgggccat gtggtttcat tcactctgaa
     3301 aatcataagg aaatggtgtc ttaagacccc gcccccccca agtagctgct taccagatcc
     3361 aagcaaagaa aatgaattgt gttcactctg ttactattct ggaagaacaa ctttcataaa
     3421 gaatctacag gaaaacgtta ctgcttagaa tacccttaaa gcccaagtaa agggagcatt
     3481 tcagcagcac aagaaggaaa ttgagaagat gagccctcag catcctttag cccatgttct
     3541 gcagatcaca gttgtttctg taacacaaca gttccttcat tctccacacg cacaaatcga
     3601 cactatccac atgctccata aatattctga tccctgcaga tctcttttat aaatgatttc
     3661 attgactgtg ctgcatgtgt ttcccttagc ccttcacggg ctgataagta tgccttaaaa
     3721 atcaggacag ccaccatgat catgtggcta cttacagcac ttggaattaa atgactttct
     3781 aagtaaccag tgaaatattt atcggataga cacccgagat atatgattga gctcttggta
     3841 aaatagataa attctaagtg tgtctttaaa tgtaaatcat atagaggagt cttttctttg
     3901 tctatagttc ttccccctgc ccttttaata ttcttgttct agtcagtcag agagaaagat
     3961 tcagactcta agttgttcta aaggatgaaa agaagaaaga tgttaatttt gatgtataag
     4021 aacaagtata tttcttgttg caataggcag tgtttaaatg gactatgtaa gtcatcagct
     4081 agcattaagt attcctaata ataaaaattt caaagtataa tatcatatac tttagaaaaa
     4141 tgaaaggttt tatattctga tttctttctt ttttttttca gattgactaa aaattctagt
     4201 cactgatgtt tgcaagatta ttgcattttg tatttcaact gcattggata ccaagcatag
     4261 aaattagtga agccatcttt ttcttttcag gttataaaag aaatgtaaag ctatatccac
     4321 tagtgtgtgc tatctctagt tgaagatgtg catatacccg acaacgtcat aaaacaaaga
     4381 atgttacctt ccaaataagt tatgagaaat tattttccta ggggtgcttc aaaatcaaaa
     4441 tccacataac tgagtgtgta gtatttcttc aagccccaga agccttgctt cctctagatg
     4501 ctataacaaa ctgctcagac ttgagtaact atacaaattt acaatcttgg aggtcagaat
     4561 ttcaaagtca gccttaaagg gctaaaacca agatgctagg aacaccacca ccttttgaag
     4621 gctccagtga ggccttgttt cttccatttt ctggggatgt cagtatttct tcactcctac
     4681 taacaacatt tcaattttgc ctcccttttt tcctgcggtc acagatcctt ctagattcct
     4741 gcaaggacac tttttttagg gataattaca ctttttttag ggataatttt agggataatt
     4801 acaggttaat cttcccctct tgccattcat gcttatgtgc catttgtccc tttgaacaga
     4861 gaagcattca taggttcctg ggtttatgat gtggctatgg ggaaaatctg ggaaaggttt
     4921 cttatcctgc tttattcagt ttcccacaca gccaaagacc ccagagagca aaatgctaat
     4981 tgattaattc atgggcaaaa agttctaaga ttagtatgtg tgaaggagaa ttgtcattta
     5041 tcattcagat tacctcccct tactttgcat aaataccttt taaaaaactc ggcatgaaaa
     5101 ttctcctatt ccagtaaatc atctgggtta tcacatcaaa cctttatatg ttttaaatat
     5161 ccttcctctc atagttaaac atgttacgat aggaaaaata accaacctgt gaaaactgca
     5221 atagcaccgc taaaatgatg ctcgtgccat attacgtttt caaaaagcat ttgcttcttt
     5281 atcatgagtg agttcgttct ccatgattgt cagatctgca agtgataact actaattcac
     5341 taagaataat aaacagaata tgctcttctt aattaaagga acaatcctaa aacctgactc
     5401 gatttctttt tatattgcag caaaaaaaat atttcttgac tgaaatcaca gtttttgaac
     5461 tagattatag acttctaaat tgaatcacgt tttcaaccat tcagcctttc cagattatat
     5521 aatgatgaaa catattggaa aacaaaaaca gttgaatgcc agttgagtcc ttaattttct
     5581 ttcctttcct tttttttttt ttttaatctg aaacaaacaa gagattttcc aggcacagtt
     5641 tggcatggcg aagaaacatt aaaagtgggg gaaaaaaagg gggggaagaa tcaatttata
     5701 gaaggcaatt gcaagaagca tttcgtagaa gccaagttcc ttaaagatgt ttatgttcca
     5761 tttaatacta aagagatagg tgctgcccgg gagggtggag agaggatgac tgctttgtgt
     5821 tcttcggaaa gctgaccaca tttagtgaga actgaactgc tatttttagg actttatttt
     5881 attttcttaa ctgagactaa cttagaacct ttaaaaaaaa tatggaaaag tatagttaag
     5941 aaggaaaatc cggctagact agtgggtgcc tttacagaaa tattgatgat tttggaatgt
     6001 tcaatgaaaa tgcatatata atagctgtgg tttaagaatc catatataag gtaggttttc
     6061 ttttcacata taaactccaa tactcttact tagttctatt tgaaaattaa gttactatgg
     6121 ggaggaattt cttttaagtt tgcttggttg tattaaaatt ataattacag ttcgagaaaa
     6181 cgttatgaaa ttcatgtggt gatagcaaat taaatatgct caaaatttaa gtctaaaata
     6241 aaagcccaga aattgaaaat
//
