LOCUS       XM_039096217            7809 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus enhancer trap locus 4 (Etl4),
            transcript variant X1, mRNA.
ACCESSION   XM_039096217
VERSION     XM_039096217.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039096217.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7809
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7809
                     /gene="Etl4"
                     /note="enhancer trap locus 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 6 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:291356"
                     /db_xref="RGD:1563437"
     CDS             500..6505
                     /gene="Etl4"
                     /codon_start=1
                     /product="sickle tail protein homolog isoform X1"
                     /protein_id="XP_038952145.1"
                     /db_xref="GeneID:291356"
                     /db_xref="RGD:1563437"
                     /translation="MSKSSRSARSFFTNAAAKLPSSKKDDLSSKQKKTSRGEKTERTG
                     SEGNLAEHQQVQTAVATAAQRKAAEAHKEQGKSNLHVTSQEDAACRRPKERLSNGNTR
                     AQVSKPARNIPRRHTLGGPRSSKEILGMQTSEMDRKREAFLEHLKQKYPHHATAIMGH
                     QERLRDQTKSPKLSHSPQPPNLGDPVEHLSETSGDSLEAMSEGDVPSPFARGSRTRAS
                     LPVVRSTNQTKERSLGVLYLQYGDETKQLRMPNEITSADTIRALFVSAFPQQLTMKML
                     ESPSVAIYIKDESRNVYYELNDVRNIQDRSLLKVYNKDPSHAFNHMAKAVNGDVRMQR
                     EIVYARGDGLVAPRPGSTAHPPHVIPNSPPSTPVPHSLPPSPSRIPYGGSRPMAIPGN
                     ATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSSKNLVMFRNEGFYADPYLYHE
                     GRMSIASSHGGHPLDVPDHVIAYHRTAIRSASAYCNPSMQAEMHMEQSLYRQKPRKYP
                     DSHLPALGSKTPPASPHRVGDLRMIDMHPQLNVHGPPHTLQPDRASPSRQSFKKESGT
                     LVYIEKPRNTPGLSGLVDLGPPLVEKQVFAYSTATIPKDRETRERMQAMEKQIASLTG
                     LVQSALFKGPITSSSKEASSEKMMKATANRNQAEGAGAAHVSAGKSLGAVESSLPPSQ
                     PLPAGTSPIHTSLLDMRRNVAELRLQLQQMRQLQLQNQEILRAMMKKAELEISSKVKE
                     TMKRLEDPVQRQRTLVEQERQKYLHEEERIVKKLRELEDFVEDLKKDSSSAGRVVTLK
                     DVEDGAFLLRQVGEAVATLKGEFPTLQNKMRAVLRIEVEAVRFLKEEPHKLDSLLKRV
                     RSMTDVLTMLRRHVTDGLLKGTDAAQAAQYVAMEKATAAEVLKHQEETTHAPGQPLHC
                     STGSPGDVKSEVVPLSTMTVHHVQSSPVVMQPSQHSSALTNPAQNLPGGTRPHTAISQ
                     EVISSPQSAPAPQSPQTPLNGSSVQSLFIEEIHSVSAKNRAVSIEKAERKWEEKRQNL
                     EHYNGKEFEKLLEEAQVNIMKSIPNLEMPPTSSPVAKGDGTAVDKLELSEDSPNSEQE
                     LDKLGGKSPPPPPPPPRRSYLPGSGLTTTRSGDVIYTGRKESMSKVTSEEPGPTPQTR
                     ATKCPPEEPAPACVPSPPPVPASSSKDGEEEEEGDKIMAELQAFQRCSFTDVNPNSHA
                     EQSRADSHLKDTRPGATAPPKEKKGSSGGWRSEQLQNLEFFHEDVRKSDVECENGPQA
                     ESQKVTAGALRPSGPPKWGRAMVDSLSDTSRTSECRADTFTEEIAPNKNLYQDGRNYS
                     QKNVPKVSFNFTGLNSLEGDINKGSKVSGLQYAGPDTENQKLNFGKIKEIVQHGQENA
                     DKGQIPPPTQSAEFSVHDVKTQDQDVPVADYGQVVLRSKVGRHTNMNMNEDGESTPSS
                     PSEEHTATDNIAFMITKTAVQVLSSGEVHDIVSQKGQDVQTVNIDGRKETASQQEGTE
                     GEEPVVCLDKKPVIIIFDEPMDIRSAYKRLSTIFEECDEELERMLTEEKIEEEEEDEN
                     GDQTSSQMSHEQVNSGSGRIGQKAETQSQPHIRSAESLTPGEQEVHKAEQRKLSSADS
                     PDSGNRCEVADDQFESPKKKFKFKFPKKQLAALTQAIRTGTKTGKKTLQVVVYEEEEE
                     DGTLKQHKEAKRFEITRSQPEDALKTMARRQEQLSLEGTFPTSRTDEIRKNTYRTLDS
                     LEQTIKQLENTISEMSPRTLVDTPCSSNRDCGASLPHITQEVSPRSLLVLDEVPPAPE
                     PPTSISSASRKGSSTTPQTSRMPVPMTSKNRPGSLDKASKPSKLQDPRQYRQANGSAK
                     KAGGDCKPTSPSLPASKIPALSPSSGKSSSLPSASGDSSNLPSAPATKSSIASTPLSP
                     QAGRSVHSASLIPSVSNGSFKFQSPPHAGKGHHLSFALQAQNGRAAPTSSSSSSPPSP
                     ASPTSLNQGARGIRTIHTPSLASYKAQNGGSSKATPSTAKETS"
ORIGIN      
        1 tccacagtcc tgtaaacctg gcatctggct cattttcaca tattgtacct gagtgggcgg
       61 gtctatattt acattcatgt tccatttctg gctgtccagt gactagtctg agcgtgctgg
      121 ggacttccct gagcgagcgt gcgtgtgtgc atacttcaca ttccctgtcc cagaatctgc
      181 aggtccctgg agttggacat ttactattgg aactgccacc ctcatctttg aaacccgttt
      241 ccgttcctca cttctagtga tggggtgatg tggctgcaga atgcctttgt ttaataaaca
      301 aaaaacaaac aaaaaacaag tggcccagcc caaccccgcc tggcactttc tatccagctg
      361 aacacagtcg ctggctgttg agtagtgaat ctcatagggt aaactttaga atttgctgcc
      421 cgagcaggta ccaatctaga acgaggcttt ttcttgtttg ggggttttat ttattttttt
      481 tggccccctg ccgtttgaaa tgtccaaatc ctcccgctca gctagatcct tctttactaa
      541 cgcagctgct aagctgccgt cctctaagaa ggatgactta agcagcaagc agaagaaaac
      601 cagccgaggt gagaagactg agaggactgg aagcgaagga aacttggcgg agcatcagca
      661 ggtgcagaca gcagtagcaa ctgcagctca gaggaaggca gcggaggctc acaaagaaca
      721 agggaaaagc aatcttcatg tgacatctca ggaagatgca gcatgccgca ggcccaagga
      781 gcgcctttct aatggaaaca caagggctca ggtttccaag cccgcccgaa atatcccaag
      841 gagacacact ctaggtgggc cccgaagttc caaagagatc ctgggaatgc aaacgtctga
      901 gatggatagg aagagagagg cgttcctgga gcatctgaag cagaagtacc cccaccatgc
      961 cacggcaatc atgggccacc aggagaggct gagggaccag acaaaaagcc ccaagctgtc
     1021 ccacagtcct caacctccca atttggggga tccggttgag catttatcag agacatctgg
     1081 tgactctttg gaagccatgt ctgagggaga cgtaccaagt ccttttgcca gaggcagtcg
     1141 aactcgggca agccttccag tggtgagatc gaccaatcaa acaaaggaaa gatccctggg
     1201 tgttctctac ctccagtatg gagacgaaac caaacagctg cggatgccga atgaaatcac
     1261 cagcgccgac acgatccgcg ctctctttgt aagtgccttt ccacagcagc tcaccatgaa
     1321 gatgctggag tcacccagtg ttgccatcta catcaaggat gagagcagaa atgtctatta
     1381 tgagttaaat gatgtgagga atatccaaga cagatccctt ctcaaagtat acaacaagga
     1441 tccttcacat gcgtttaacc acatggcaaa agccgtgaac ggagacgtga ggatgcagag
     1501 agaaattgtt tatgcgagag gagatggact cgtcgccccg cgcccgggat ctacagctca
     1561 cccgcctcat gtaattccaa actccccacc atccactccg gtgccccatt ccttacctcc
     1621 ctctccatcc agaattcctt acgggggcag ccgtcccatg gctattcccg gcaacgccac
     1681 catccccagg gacagactct ctagcctgcc agtctccaga tccatctccc caagccccag
     1741 cgccattttg gaaagaaggg atgtcaagcc ggacgaagac atgagcagca aaaacctggt
     1801 tatgttcaga aacgagggtt tctatgccga cccttacctc tatcacgagg gacgaatgag
     1861 catagcctcg tcccatggag gccacccttt ggatgtcccg gatcacgtca ttgcgtatca
     1921 ccgcacagcg atccggtcag cgagtgctta ctgcaacccg tccatgcaag cagagatgca
     1981 tatggagcag tcgttatacc gacaaaagcc aaggaaatac cctgacagcc atttgcccgc
     2041 cttgggctcc aagacgcccc cagcctctcc tcaccgggtg ggtgacttaa gaatgataga
     2101 catgcacccg caacttaacg tacatggacc cccgcacacc ctgcagcctg accgggcctc
     2161 cccgagtcgc cagtcgttta aaaaagaatc cggcaccctg gtgtacatcg aaaagccgcg
     2221 aaacactccg ggattatccg gccttgtaga cctggggcct cctctagttg agaagcaagt
     2281 ttttgcttac agcactgcta cgatccccaa agacagagaa accagagaga ggatgcaagc
     2341 catggagaag cagattgcca gtctaactgg cctggttcag tctgcgcttt ttaaagggcc
     2401 cattacaagt agtagcaaag aggcctctag tgagaaaatg atgaaagcca cagccaacag
     2461 gaaccaagcg gaaggcgcag gagcagccca tgtttctgca gggaagagtc tgggcgctgt
     2521 ggagtcctcg ctgcctccca gccaacccct gcctgccgga acctcgccca tccacacgag
     2581 cctgcttgac atgaggagga acgtggcaga actcaggctc caactccagc agatgaggca
     2641 gctccagctg cagaaccagg agattctgag ggcgatgatg aagaaggctg agctggaaat
     2701 cagtagcaaa gtgaaagaga ccatgaagag actggaggat ccggtgcaac gccagcgcac
     2761 cctggtggag caagagagac agaagtatct ccatgaagaa gagcgaatag tcaaaaagtt
     2821 acgtgagctg gaggactttg ttgaggactt gaagaaggac tcttcgtctg ctggccgagt
     2881 ggtgaccctg aaagatgtgg aggatggggc tttcctcctg cggcaagtgg gagaagctgt
     2941 ggccactctc aaaggggaat ttccgacctt gcaaaataaa atgcgtgctg tcctgcgcat
     3001 agaagtggag gcggtgaggt tcctgaagga agaaccacac aagctggaca gtctgctgaa
     3061 gcgagtgagg agcatgacag atgtcctgac gatgttacgg aggcatgtca ctgatgggct
     3121 cctgaagggc acagatgcag cccaggccgc acagtatgtt gccatggaga aggccacggc
     3181 tgcagaggtc ctgaagcatc aggaagagac gactcacgct cctgggcagc ccctccactg
     3241 tagcactgga agccctggtg atgtgaagtc agaagtagta cccctatcca ccatgacagt
     3301 tcaccatgta cagagctcgc ctgtggtcat gcaaccctcc cagcactcct cagccctgac
     3361 aaacccagcc cagaacttgc ctggagggac cagaccccac acagccatct cacaggaagt
     3421 aatttcttca ccacagtcgg ctccagcccc ccagtcccct cagaccccac tgaatggatc
     3481 ctctgtgcag agcttgttca tcgaggaaat ccacagtgtg agtgccaaga acagggcagt
     3541 gtccattgag aaggcagaaa ggaaatggga agaaaaaagg caaaatctgg aacactataa
     3601 cgggaaggag tttgagaagc tcctggaaga agctcaggtc aacatcatga agtcaattcc
     3661 aaacctggag atgcccccaa cttccagccc agtggcaaag ggagatggga cagcagtgga
     3721 taagctggag ctgtcagaag attctccaaa ttcagagcag gaattggaca agctgggggg
     3781 aaagtcaccc cctcctccac ccccaccccc tcggagaagc taccttcctg ggtcaggact
     3841 taccacgacg aggtccggcg atgtgatcta cactggcagg aaggagagca tgtctaaggt
     3901 gaccagtgaa gagcctgggc caaccccaca gactagagcc acaaaatgtc ccccagagga
     3961 gcctgcccca gcctgtgtcc catcaccacc acctgtccct gcctcttcct ccaaagatgg
     4021 ggaggaggag gaagaaggag acaaaatcat ggcagaactc caggcattcc agaggtgttc
     4081 ctttacggac gtaaatccaa acagtcatgc tgagcagtcc cgagctgaca gccaccttaa
     4141 agacactagg ccaggcgcca cagccccacc caaggagaag aagggaagtt ctggaggctg
     4201 gagatcagag cagctccaga atttggaatt tttccacgaa gatgtacgaa aatctgatgt
     4261 tgaatgtgaa aatggccccc aagcggaatc tcaaaaggtt actgcagggg ctctgagacc
     4321 tagtggcccc cccaagtggg gaagagccat ggtggatagt ttgtctgaca cctcaagaac
     4381 atcagaatgt agagctgaca ccttcacaga ggaaattgct cccaacaaga acttatacca
     4441 agacggtaga aattattccc agaaaaatgt gcctaaggtc agttttaatt tcactggcct
     4501 gaactcatta gaaggtgaca tcaacaaagg gtctaaggtc tcgggactac agtatgccgg
     4561 tcctgacacg gagaatcaga agttgaattt tggaaagata aaagagatag tccaacacgg
     4621 acaagaaaat gcagataagg gtcaaattcc tcccccaact caatcagcag aattcagtgt
     4681 tcacgatgtc aaaacacaag atcaagatgt tcccgtggca gattatggtc aagttgttct
     4741 gagatctaag gtgggtaggc acacgaatat gaacatgaat gaggatggag aatcaactcc
     4801 aagttctccc agtgaggagc acacagccac tgataacatc gcctttatga tcaccaaaac
     4861 tgctgtccag gttctgtcca gcggggaggt ccatgacata gtgagccaaa agggacaaga
     4921 tgtgcagaca gttaacattg atggaaggaa agagacagcc tctcagcaag aaggaaccga
     4981 aggggaagaa ccggttgtgt gcctggacaa gaaaccagtt atcatcattt ttgatgaacc
     5041 catggacatc cgatctgcat ataaaagact ctcgaccatc tttgaggaat gtgatgagga
     5101 gctagagaga atgctgacag aggaaaagat agaggaggag gaagaggatg aaaacggaga
     5161 ccagacctca tctcaaatgt cccatgagca ggtcaactca ggaagtggta ggattggaca
     5221 aaaggcagag acacaatcac agccccacat ccggtcagca gagtccctga ctccaggaga
     5281 gcaggaagtt cataaagccg agcagagaaa gcttagctca gccgattctc cagactcagg
     5341 aaataggtgt gaggtggctg atgaccagtt tgaaagcccc aagaagaagt ttaagttcaa
     5401 attccctaaa aagcagcttg ctgctcttac acaagcaatc cgcacaggca ccaaaacggg
     5461 aaagaaaacg ctgcaggtgg tggtctatga ggaggaagaa gaggatggta ctttgaagca
     5521 gcacaaagaa gccaagcggt ttgaaatcac caggtcacag cctgaagatg ccctcaaaac
     5581 aatggctagg aggcaagagc agctcagcct tgagggcaca tttccaacat caaggactga
     5641 tgaaattagg aaaaatactt acagaacatt ggatagcctg gagcagacca taaagcaact
     5701 tgaaaataca atcagtgaaa tgagccccag gaccctagtt gataccccat gttcttccaa
     5761 cagagattgt ggtgcaagct tgccccacat aacccaagag gtctctcccc ggtccttgct
     5821 agttctggat gaagtgcccc ctgccccaga gccccctacg tccatatctt cagcttcacg
     5881 taagggttcc agcactaccc cacagacaag ccggatgcca gtgcccatga cttctaagaa
     5941 cagacccgga agcctggata aggccagcaa gccatccaaa ctacaggatc cccgccaata
     6001 ccgtcaggct aatggaagtg ctaagaaagc tggtggggat tgtaagccta cctccccctc
     6061 cttacctgct tctaagattc cagccctttc tcccagctct gggaaaagca gttctctgcc
     6121 ctctgctagt ggtgacagct ctaacctccc cagtgcacct gctactaaat catcgattgc
     6181 ttctacccct ctcagccccc aagcaggacg gtccgttcac tctgcttccc tcatcccgtc
     6241 tgtctctaat ggctccttca agtttcagag cccgcctcat gcaggtaaag gccaccacct
     6301 ttcgttcgca ctgcaggctc aaaatgggcg agctgcccct acttcttctt cctcctcatc
     6361 ccctccttcc cctgcctccc ccacctccct gaatcaaggt gccaggggca tccggaccat
     6421 ccatactcct agcctcgcca gctacaaagc acagaatgga ggttcaagca aagccacccc
     6481 gtccacagca aaggaaacgt cttaaagtca gatcctatta ggcacaaggt ggaattacat
     6541 tcttgttttt aatttttagc agtctggaac aactgttttc acaagagaat gtaccatatc
     6601 gctgtattgt tcaaggctcc atgcagagta tgtgctaatt actgagttga tagttgcagt
     6661 aaagcttgtt ttttctactc tgctgttgta acgacatcgt gtttaccgtc tagatccgat
     6721 acctgttaca cgaagaaagc atgtgctata caaagagaga gtatgatgag agtgaagaca
     6781 tgtatgagac aagctgactg tactatgcat gtaagacatg tatgattaca gaattttagt
     6841 atgttttgta taaaaatatt tttcattacg gagactagag gcaaagagag aaatacgcaa
     6901 gcgcgactat ataaattgta aagcatatat tacgatattt tcttttattt tagtgttatt
     6961 tagctttatt acagatttct atttttgtca gaacttcatg gttcctttcc agatcttttt
     7021 tgccaaaaca ttttgatact acagcgttgt acatttgaaa gtagcgtgct agactctaag
     7081 ccaatgagct cctacagccc gtagagagaa attcagtaaa actcttgcac tgccgtcaaa
     7141 agtttgtatg ataatttgct agcgcaagcc agctaatttt ttctttgctt tctctttatt
     7201 tttattttcc tttttttttt ttttaacaga caaaacatat gcgtattctg tagccacttt
     7261 tttttttgca ctgtctaacc ctttttatgt tttcttagac ctggtaaccc acaccattgc
     7321 attgcagatt ttaaaatgta cacttctgta tggttctgta ctgaggaact cttgtaaata
     7381 tacaaatatg aatagacatc taaagactat atgtgacagc acatagagta gttttcccac
     7441 accaaagtta atttgtatgc atgctttaag aatctatatt gggatgggca gaaatgggac
     7501 tatccacaca tttttaaaaa gcaacaagtt tgcacagtta gggtggtttt gtaaataact
     7561 gtatttgtat aacacagcca tgtaacatac ggaactgtaa gcagagactt tgcaaaacta
     7621 aataaagggc tgcatgctta ttattttttt gtaccttatc actataatga attccagtca
     7681 acagatatgt aactattgcc acagggtttc aactttgagg gcattctaag taatgtgtaa
     7741 ccacatccac tcatacggtg ttgcttcctt gaaagcgaag gatgagttct aataaactaa
     7801 tcaaccgtg
//
