LOCUS       NM_001109094            3259 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus ETAA1 activator of ATR kinase (Etaa1), mRNA.
ACCESSION   NM_001109094 XM_001058183 XM_003751402 XM_573669
VERSION     NM_001109094.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3259)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3259)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001109094.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643290.45168.1,
                                           SRR26643295.49783.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-303               JAXUCZ010000014.1  96515315-96515617   c
            304-429             JAXUCZ010000014.1  96514336-96514461   c
            430-506             JAXUCZ010000014.1  96513999-96514075   c
            507-619             JAXUCZ010000014.1  96509927-96510039   c
            620-2571            JAXUCZ010000014.1  96507744-96509695   c
            2572-3259           JAXUCZ010000014.1  96500899-96501586   c
FEATURES             Location/Qualifiers
     source          1..3259
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q22"
     gene            1..3259
                     /gene="Etaa1"
                     /gene_synonym="Etaa1l1; RGD1560957"
                     /note="ETAA1 activator of ATR kinase"
                     /db_xref="GeneID:498420"
                     /db_xref="RGD:1560957"
     exon            1..303
                     /gene="Etaa1"
                     /gene_synonym="Etaa1l1; RGD1560957"
                     /inference="alignment:Splign:2.1.0"
     CDS             81..2699
                     /gene="Etaa1"
                     /gene_synonym="Etaa1l1; RGD1560957"
                     /note="Ewing tumor-associated antigen 1; Ewing
                     tumor-associated antigen 1-like 1; ewing's
                     tumor-associated antigen 1 homolog"
                     /codon_start=1
                     /product="ewing's tumor-associated antigen 1"
                     /protein_id="NP_001102564.1"
                     /db_xref="GeneID:498420"
                     /db_xref="RGD:1560957"
                     /translation="MRLKDGATGMSRRRKHADSPVRTRRAGAENCCSAAELWPRASRA
                     ARSSQPSRAGTRSALRSQRRAAADGGRSPGEKETPTQVLKVNLLSCTFSSPNDPDGQT
                     DIFWDQNSPMTKQLGKRRTKRISSAYSDEISHIVNRIAPQDEKPVTNSMLGVWIGDTA
                     IPCTPSVAKEKSRVKISCTKLKTKNREKELMKLAQQFDKNMEELDVIQEQDGKNHDFI
                     QMTSEMGHLHNHKNSVQMASDDIVPEVSYTPIKKQVEGDSRISLGKGQDSSQRPFDRN
                     VEAAFNAIFDGSTQMCSGQLSQELSDTFLNNSKTSMKKENVLLQEEIITTETLLTDNL
                     LNKTPISSSPQVDTTIILKSCVTPSPKTPVAPNKHLDELTANDFEDDWESLLSSEPFL
                     MENAEMLELFPSTTAQGTGQKAVCTSIGENDTITSRANMNLGGRLRDSKVTLDLPSKT
                     RSRELKNAGECRFSPHPGDEPRKFPFIGNKVRFEKSVTNFVSKNEDYVAVSNLTKVKE
                     DGHGKGILNASNKSVSYTRYPNEQNHKLGVNLPLKVPTTDPFDSVFVGKENIVCNTNQ
                     SHGSKFSSPFDDWNDPLLASEMIKACHQLETTWEADDVDDDLLYQACDDIERLTQQEN
                     KGSKESESKSNTSIHGSRNTCSASEQGSQLVSSKHWNLVSSPMPLSLTNKSQINKPVT
                     VEKRNICGDCPNILDATNLSVCSKNSSDNQHVPVQVNSSNSVLVGSSHLKVNLGPVST
                     KIATNTKFSTAQLSHHSLADTAQSDSKILKSSKFTFKKKNPQFLSELNQNPLAGSMPV
                     SKISQDLGKRETVNSWPEANQKHSESLKPSSPDEEERNRKYSPEEIRRKRQEALVRRK
                     AKALHTVQSAPVSLPW"
     exon            304..429
                     /gene="Etaa1"
                     /gene_synonym="Etaa1l1; RGD1560957"
                     /inference="alignment:Splign:2.1.0"
     exon            430..506
                     /gene="Etaa1"
                     /gene_synonym="Etaa1l1; RGD1560957"
                     /inference="alignment:Splign:2.1.0"
     exon            507..619
                     /gene="Etaa1"
                     /gene_synonym="Etaa1l1; RGD1560957"
                     /inference="alignment:Splign:2.1.0"
     exon            620..2571
                     /gene="Etaa1"
                     /gene_synonym="Etaa1l1; RGD1560957"
                     /inference="alignment:Splign:2.1.0"
     exon            2572..3259
                     /gene="Etaa1"
                     /gene_synonym="Etaa1l1; RGD1560957"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gacttgcaaa gatggcggtg atcggtggcg cgcggcctct tagcggagcg gttgtcccgc
       61 tcctccgtag caagatgtga atgcggctga aggacggtgc cacgggaatg agtcggcgaa
      121 ggaagcatgc ggacagccct gtgcggacgc gcagggcggg tgccgagaac tgctgctcgg
      181 cagcggaact gtggccccgg gcgtccaggg cggcccgcag ctcccagccc agccgggcgg
      241 gaacgcggtc tgcgctgcgg tcgcaacggc gggcagcggc tgacggcggg cggagcccgg
      301 gggaaaagga gacaccaaca caagttctga aagtgaattt attgtcctgt accttcagtt
      361 ctccaaatga tccagatgga cagactgata tcttctggga tcaaaattct ccaatgacaa
      421 aacagttagg taaaagaaga acaaagcgga tttccagtgc atacagtgat gagatttcac
      481 atattgttaa tcgtattgct cctcaggatg aaaaaccagt gacaaactcc atgctgggtg
      541 tatggattgg tgacactgct attccttgta ctcctagtgt tgcaaaagaa aagtcaagag
      601 tgaaaatcag ctgcacaaag ttaaaaacaa aaaatcgaga aaaagaactt atgaaattgg
      661 cccaacagtt tgataaaaat atggaagaac ttgatgtgat tcaagagcaa gatgggaaga
      721 atcatgattt tatccagatg acttcagaaa tgggacattt acataaccat aaaaattctg
      781 tgcagatggc atcagatgat atagttcctg aagtcagtta tactccaata aagaagcaag
      841 tggagggaga cagcagaata tctctgggaa aggggcaaga cagcagtcag agaccctttg
      901 accgaaatgt tgaagcagcc tttaatgcta tttttgatgg ttccactcag atgtgtagtg
      961 gacagctaag ccaggagctg tcagatactt ttttgaacaa tagtaaaact tccatgaaaa
     1021 aggaaaatgt cttactacaa gaggaaatca ttactactga aactctgctc acagacaacc
     1081 tgctaaataa aactccaata tcatcttccc ctcaagtaga tactaccata atactaaaat
     1141 catgtgtgac tcccagtcct aagactccag tagcacctaa taagcatctt gatgaattga
     1201 ctgctaatga ttttgaggat gattgggaaa gcttactaag cagtgaaccc ttccttatgg
     1261 agaatgctga aatgcttgaa ctctttccct ctacaactgc tcaaggtact ggtcagaagg
     1321 cagtttgtac ctccattggg gaaaatgata caatcacatc aagagcaaat atgaatctag
     1381 gtggaaggtt aagagactca aaagtaacac tggatcttcc ttcaaagaca cgaagcagag
     1441 aactaaaaaa tgctggagaa tgtaggtttt caccacatcc aggtgatgaa ccaaggaagt
     1501 tcccattcat tgggaataaa gtgaggtttg agaaatctgt cactaacttt gttagtaaaa
     1561 atgaagatta tgttgctgtc tctaacctta caaaagtgaa agaagatggt catggtaagg
     1621 gcatacttaa tgcctctaac aagtctgttt catacacaag gtatcctaat gaacaaaatc
     1681 acaagcttgg tgttaacctg cctttgaaag tacccactac tgacccattt gattctgtgt
     1741 tcgtgggcaa agaaaacatt gtgtgtaaca caaatcagtc tcatggatca aagttcagtt
     1801 ctccctttga tgactggaat gacccactgt tggccagtga aatgattaaa gcatgccatc
     1861 aattagaaac tacctgggaa gcagatgatg tagatgatga tttgttatat caggcttgtg
     1921 atgacatcga aagactaact cagcaagaaa acaagggcag caaggagtca gaaagtaaaa
     1981 gtaatacttc catacatgga tccagaaata cttgttctgc atctgaacaa ggaagtcagt
     2041 tggtgtcgtc taaacattgg aatcttgtca gttctccaat gccattgtct ttaacaaata
     2101 aatcacagat aaataagcca gtgacagtag agaaaagaaa catatgtgga gattgtccca
     2161 atattttgga tgctacaaat ttgtctgtgt gctctaagaa ttcaagtgat aatcagcatg
     2221 taccagtaca ggtgaatagc tcaaactctg ttcttgtagg aagttcacat ctgaaagtta
     2281 atttgggtcc tgtgagcaca aagatcgcta ctaatacgaa gtttagtact gctcagctgt
     2341 cccaccacag cttagcagat acagctcaga gtgacagcaa aatactgaag tcatcaaaat
     2401 tcacatttaa aaagaagaac cctcagtttc tttctgagtt aaatcaaaat cctctagcag
     2461 gaagtatgcc tgttagtaaa atctcacagg acttaggaaa aagggaaact gtcaattcat
     2521 ggcctgaagc taatcaaaaa cattctgagt ctttgaaacc atcttcccca gacgaagaag
     2581 agagaaacag gaagtattct cctgaagaaa ttcggcggaa aaggcaggaa gcactggttc
     2641 gaagaaaggc caaagcgttg cacactgtgc agtcagctcc tgtttcactg ccttggtgaa
     2701 agccgagtga gccggtttga cagctgtgag aactatctgt gataggactt cgttctgatt
     2761 tctccgtgag aagtttactg ctgagttttt agcatgagct actttattat ttaataaatc
     2821 actgtttaca atggtaaatg aaaccttctc atatgtatgt gaatcatgta tataagtttt
     2881 tgaaaagtta gcagttatgt atatacagag gaaaagtact tgtctttata aatagggtag
     2941 cagatgagca tcaaaataac tgtatagctt ctgtagaaga ctttttctag cacaaatatt
     3001 aaaattgcta agtaaacagt aacttggttt tgtagtgtca ttttcagtta gtgtttttat
     3061 acattgtcag tttttaacta atagtcccgt attctcactg gtattgctga aaggtagaaa
     3121 atttttgttt attttgaaga aaactgtgtt taattgctat ccagaagtag gtaattttaa
     3181 tatttctaaa atgtgattga atttgaatac atttcactat taggaaaagc acagactagg
     3241 cattaagttt agattagca
//
