LOCUS       XM_039108526            1837 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus estrogen related receptor, alpha
            (Esrra), transcript variant X2, mRNA.
ACCESSION   XM_039108526
VERSION     XM_039108526.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108526.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1837
                     /gene="Esrra"
                     /gene_synonym="ERRalpha; Errra"
                     /note="estrogen related receptor, alpha; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 15 ESTs, 1 long SRA read, 1 Protein, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 77 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:293701"
                     /db_xref="RGD:1583866"
     CDS             228..1067
                     /gene="Esrra"
                     /gene_synonym="ERRalpha; Errra"
                     /codon_start=1
                     /product="steroid hormone receptor ERR1 isoform X1"
                     /protein_id="XP_038964454.1"
                     /db_xref="GeneID:293701"
                     /db_xref="RGD:1583866"
                     /translation="MLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGP
                     RKTAPVNALVSHLLVVEPEKLYAMPDPASPDGHLPAVATLCDLFDREIVVTISWAKSI
                     PGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGD
                     LGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEY
                     EAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEMLEA
                     MMD"
ORIGIN      
        1 cgccgagtga ggggggacgc agcgcggcgg ggcggtgcgg ccggaggagg cggcccccgc
       61 tcaccccggc gctccgggcc gctcggcccc catgcctgcc cgcccgccct gccggagccc
      121 aagggagcat cgagtacagc tgtccggcct ccaatgagtg tgagatcacc aagcggagac
      181 gcaaggcctg tcaggcctgc cgcttcacca agtgcctgcg ggtgggcatg ctcaaggagg
      241 gtgtgcgtct ggaccgagtc cgcggtggcc gacagaagta caagcggcgg ccagaggtgg
      301 acccattgcc tttcccaggc cccttccctg ctggtcctct ggcagtagct ggaggacccc
      361 ggaagacagc cccagttaac gccctggtgt ctcatctgct ggtggttgaa cctgagaagc
      421 tgtacgccat gcctgaccca gcaagccctg atggacacct ccctgctgtg gccactctct
      481 gtgatctttt tgatagagag atagtggtca ccatcagctg ggccaagagc atcccaggct
      541 tctcctcact gtcactctct gaccagatgt cagtactgca gagtgtgtgg atggaggtgc
      601 tggtgctggg tgtggcccag cgctcactgc cactgcagga tgagctggcc tttgctgagg
      661 acctggtcct ggatgaagag ggggcacggg ctgctggtct gggggatctg ggggcagccc
      721 tgctgcagct ggttcggcgg ctgcaagccc tacggctgga gcgggaggag tacgtcctgc
      781 tgaaagctct ggcccttgcc aactctgact ccgtgcacat tgaagatgct gaggctgtgg
      841 agcagctgcg cgaagccctg cacgaggccc tgctggagta tgaagctggc cgggctggcc
      901 ctggaggggg tgctgagcgg aggcgcgcag gcaggctgct gcttacgctg ccactcctcc
      961 gccagacagc aggcaaagtc ctggcccatt tctatggggt gaagctggag ggcaaagtgc
     1021 ccatgcacaa gctgtttttg gaaatgcttg aggccatgat ggactgaggc aaggggtggg
     1081 acagggtggg gtggctggca ggatctgcct ggcatagggt gttagcccca agggggcaaa
     1141 gctggagtct gggcagtgcc acagcctgct ggcagggcca gggcaatgcc atccgcccct
     1201 gggagcaggc ttcatgccct cccctccccc ctttgggggg gattgtcaga agccaggaaa
     1261 gtgaatgccc aggtgtgggc acagtgctgc cccttgcaag ccataacgtg ccccctccca
     1321 gagtgtcggg ggccttgcgg aagccatagg gggctgtagg ggatgtgtag gaggcaaaaa
     1381 ctgatctcag ggagggaagg ggatggagac cacagtctcc cagtgggtga tgcttttgct
     1441 gctgcttact ccgacctcct ctccagagca gaggggggct tggaaagcaa aggccctgcc
     1501 ccttcgctcc tctcctcatt gcattgggca ttagtgcccc cccttgaagc aataactcca
     1561 agcaggctcc agcccctgga cccctggggt ggccagggcc ccctatcagc tcccacctca
     1621 agggatgggg gacagcactg cctctacgcc ctgcagagca ataacactat atttattttt
     1681 gggtttggcc agggaggcgc agggccatgg ggcaagccag ggcccagagc ccttggctgt
     1741 acagagactc tattttaatg tatatttgct gcaaagagaa accgcttttg gttttgaacc
     1801 tttaatgaga aaaaaaatat actatggagc tcaagta
//
