LOCUS       NM_001100771            3404 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus ESF1 nucleolar pre-rRNA processing protein
            homolog (Esf1), mRNA.
ACCESSION   NM_001100771 XM_001081317 XM_345440
VERSION     NM_001100771.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3404)
  AUTHORS   Pieragostino,D., Agnifili,L., Fasanella,V., D'Aguanno,S.,
            Mastropasqua,R., Di Ilio,C., Sacchetta,P., Urbani,A. and Del
            Boccio,P.
  TITLE     Shotgun proteomics reveals specific modulated protein patterns in
            tears of patients with primary open angle glaucoma naive to therapy
  JOURNAL   Mol Biosyst 9 (6), 1108-1116 (2013)
   PUBMED   23580065
REFERENCE   2  (bases 1 to 3404)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 3404)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 3404)
  AUTHORS   Oda,T., Fukuda,A., Hagiwara,H., Masuho,Y., Muramatsu,M.A.,
            Hisatake,K. and Yamashita,T.
  TITLE     ABT1-associated protein (ABTAP), a novel nuclear protein conserved
            from yeast to mammals, represses transcriptional activation by ABT1
  JOURNAL   J Cell Biochem 93 (4), 788-806 (2004)
   PUBMED   15660422
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473949.1.
            
            [WARNING] On Oct 26, 2024 this sequence was replaced by
            NM_001100771.2.
            
            On or before Nov 22, 2008 this sequence version replaced
            XM_001081317.1, XM_345440.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3404
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36-q41"
     gene            1..3404
                     /gene="Esf1"
                     /gene_synonym="RGD1306067"
                     /note="ESF1 nucleolar pre-rRNA processing protein homolog"
                     /db_xref="GeneID:366203"
                     /db_xref="RGD:1306067"
     exon            1..84
                     /gene="Esf1"
                     /gene_synonym="RGD1306067"
                     /inference="alignment:Splign:2.1.0"
     exon            85..762
                     /gene="Esf1"
                     /gene_synonym="RGD1306067"
                     /inference="alignment:Splign:2.1.0"
     CDS             126..2654
                     /gene="Esf1"
                     /gene_synonym="RGD1306067"
                     /note="ABT1-associated protein"
                     /codon_start=1
                     /product="ESF1 homolog"
                     /protein_id="NP_001094241.1"
                     /db_xref="GeneID:366203"
                     /db_xref="RGD:1306067"
                     /translation="MSSKQEIMDDQRFRRVSKDPRFWEMPEKDRKVKIDKRFRAMFHD
                     KKFKLNYAVDKRGRPISHSTTEDLKRFYDLSDSDSDLSDEESKVLDEKRVKEKKKQTK
                     KETKSKTPIEEKKKETKKTDQKDSINKNDLNNSERIQKMKNSHKSPKIDSEVSPKDSE
                     ESLQSRKKKRDTTDLSVEASPKGKLRTKDPSTSAMVKSSTVSGSKAKREKQAVIMAKD
                     NAGRMLHEEAPEEDSDSASELGRDEESEGEITSDDRASADDDENEDEEEEEDGEEEEE
                     EEEEEDESDDESDSGPDLARGKGNVETSSEDEDDLADLFPEEPGFEHAWRELDKDAPR
                     ADEITRRLAVCNMDWDRLKAKDLLALFNSFKPKGGVVFSVKIYPSEFGKQRMKEEQIQ
                     GPVELLSIPEDAPEKDWASREKLRDYQFKRLKYYYAVVECDSPETASKIYEDCDGLEF
                     ESSCSFIDLRFIPDDITFDDEPKDAASEVDLTAYKPKYFTSAAMGTSTVEITWDETDH
                     ERITTLNRKFKKDELLDMDFEAYLASSSEDEEEVEEAPEGEDGVSIEDGKTKKSQKDD
                     EEQIAKYRQLLQVIQEKEKKGKENDMEMEIKWVPGLKESAEEMVKNKLEGKDKLTPWE
                     QFLEKKKEKKRLKKKQKALAEEASEDEIPSDVDLNDPYFAEEVKKIGIKKKSMKSAKD
                     GATSEEETELEKQKAEMALLVMDEEEDSKKHFNYDKIVEHQNLSKKKKKQLMKKKELL
                     EDDFEVNVSDARFQAMYTSHLFNLDPSDPNFKKTKAMEKILEEKARHREQKEERLIQA
                     VERAQQDTGKPAQKQPMDPALSMLIKSVKNKTEQFQARKKQRIK"
     exon            763..1136
                     /gene="Esf1"
                     /gene_synonym="RGD1306067"
                     /inference="alignment:Splign:2.1.0"
     exon            1137..1250
                     /gene="Esf1"
                     /gene_synonym="RGD1306067"
                     /inference="alignment:Splign:2.1.0"
     exon            1251..1351
                     /gene="Esf1"
                     /gene_synonym="RGD1306067"
                     /inference="alignment:Splign:2.1.0"
     exon            1352..1504
                     /gene="Esf1"
                     /gene_synonym="RGD1306067"
                     /inference="alignment:Splign:2.1.0"
     exon            1505..1619
                     /gene="Esf1"
                     /gene_synonym="RGD1306067"
                     /inference="alignment:Splign:2.1.0"
     exon            1620..1767
                     /gene="Esf1"
                     /gene_synonym="RGD1306067"
                     /inference="alignment:Splign:2.1.0"
     exon            1768..1926
                     /gene="Esf1"
                     /gene_synonym="RGD1306067"
                     /inference="alignment:Splign:2.1.0"
     exon            1927..2048
                     /gene="Esf1"
                     /gene_synonym="RGD1306067"
                     /inference="alignment:Splign:2.1.0"
     exon            2049..2136
                     /gene="Esf1"
                     /gene_synonym="RGD1306067"
                     /inference="alignment:Splign:2.1.0"
     exon            2137..2213
                     /gene="Esf1"
                     /gene_synonym="RGD1306067"
                     /inference="alignment:Splign:2.1.0"
     exon            2214..2360
                     /gene="Esf1"
                     /gene_synonym="RGD1306067"
                     /inference="alignment:Splign:2.1.0"
     exon            2361..3404
                     /gene="Esf1"
                     /gene_synonym="RGD1306067"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaatgtgct ccatgtgaac tcagactggg atcggaaaag agtagtgagt aactgtggtt
       61 gtccgtcggt atctcctgtg attttacttt gtttctctgg atatttcttc attaagactg
      121 taaaaatgtc ctccaaacaa gaaataatgg atgaccagcg gttcaggcgg gtttcaaagg
      181 atcccagatt ttgggaaatg ccagaaaagg accgaaaagt caaaattgac aagaggtttc
      241 gagccatgtt tcatgacaaa aaatttaaat tgaactatgc cgttgataaa agaggacgtc
      301 ctattagcca cagcactaca gaggacttga agcgtttcta tgacctttca gactctgatt
      361 ctgatctctc tgatgaagaa agtaaagtac tggatgaaaa gagagtgaag gagaaaaaaa
      421 aacagaccaa aaaggaaaca aagtcaaaaa caccgattga ggagaaaaag aaagaaacca
      481 agaaaactga ccaaaaggat tctataaata aaaatgactt aaataattct gaaagaattc
      541 agaaaatgaa aaactcacat aaatctccga agatagattc agaagtaagt cccaaagata
      601 gtgaagaatc cctacaaagt agaaaaaaga aaagggacac cactgacctt agtgttgaag
      661 cttcgcccaa aggaaaactg aggaccaaag atcccagtac ctctgcaatg gtgaaatctt
      721 caacagtcag tggttctaag gcaaaaagag aaaagcaagc agtcataatg gcaaaagaca
      781 atgctggtag aatgcttcac gaagaggccc cggaggaaga ttcagacagc gccagtgaac
      841 taggaagaga tgaggaatcc gaaggtgaaa tcacaagtga tgatagagcc tcagcggatg
      901 acgatgaaaa tgaagatgaa gaagaagagg aggatggtga ggaggaggaa gaagaggagg
      961 aagaggaaga tgaaagtgat gatgaaagtg atagtggtcc tgatcttgcg aggggtaaag
     1021 gaaatgtaga aactagttct gaagatgaag atgatttggc agatttattt ccagaagaac
     1081 ctggttttga acatgcttgg agagaattag ataaagatgc tcctcgggct gatgagatta
     1141 cacgccgact agcagtttgc aacatggact gggatagatt aaaggcaaaa gatctgctgg
     1201 ctctgttcaa ctcatttaag cccaaaggag gagttgtatt ttctgtgaag atatatcctt
     1261 cggagtttgg aaagcagagg atgaaggaag agcaaattca aggccccgtg gagttactga
     1321 gtattcctga ggatgcccct gaaaaggact gggcctctcg agagaagcta agagactacc
     1381 agttcaaacg attgaagtac tattatgcag tagtggagtg tgattctccg gaaacagcga
     1441 gtaagattta cgaagattgc gatggcctgg aatttgaaag cagttgttcc ttcatagacc
     1501 taagatttat accagatgat attacctttg atgatgagcc caaggatgcg gcctcagaag
     1561 ttgatctaac agcatataaa ccaaagtatt tcacatctgc tgcaatggga acatcaacgg
     1621 tggagatcac ttgggatgag actgatcacg aaagaatcac gacactgaac agaaagttta
     1681 aaaaggatga gcttttggac atggactttg aagcctactt ggcttcttcc agcgaggatg
     1741 aggaagaggt ggaggaagca ccagaaggtg aagatggagt cagcatagaa gatgggaaaa
     1801 caaagaaaag tcagaaggat gatgaagaac aaattgcaaa atatagacag ctcttgcagg
     1861 ttattcaaga aaaagaaaag aaaggaaaag aaaatgatat ggaaatggaa atcaagtggg
     1921 ttccaggact taaggagagt gcagaagaga tggtcaaaaa caagttggag ggaaaggata
     1981 aactgacccc ttgggaacaa ttcttagaga agaagaaaga gaagaaaaga ctgaaaaaga
     2041 aacagaaggc tcttgctgaa gaagccagtg aagatgagat tccttctgat gttgatctaa
     2101 atgatcccta ctttgctgaa gaagttaaaa aaataggtat aaagaaaaaa tcaatgaaat
     2161 ctgcaaaaga cggcgcaact tcagaggaag aaactgaact agaaaaacaa aaggccgaga
     2221 tggctttact tgtaatggat gaggaagagg atagcaagaa acacttcaat tatgacaaga
     2281 tcgtagagca ccagaatctg agcaaaaaga agaagaaaca gcttatgaaa aagaaggagt
     2341 tacttgaaga tgactttgag gtaaatgtca gtgatgcacg gtttcaggca atgtacactt
     2401 cccacttgtt caatttggat ccctctgatc ctaatttcaa gaaaacaaaa gctatggaaa
     2461 aaattctgga ggagaaagca cgacatcgag aacagaaaga agaacgactc attcaagcag
     2521 tggagagagc acagcaggac acgggaaagc cagcacagaa gcaacccatg gatcccgcct
     2581 tgtccatgct gattaaatct gtgaaaaaca aaacagagca gttccaagcc aggaaaaaac
     2641 agaggatcaa ataactgaga tagcctctgc tatctcctca agtgtacaga attagccagc
     2701 gtaaaggata gtgggaaaaa agccaccttt ctagaatatg aaaaataccc ttttctgacc
     2761 atcgtgaagt ttctcttcat tggggctgga gagatggctc aacacaagaa taatgttgtt
     2821 cttgcagagg atcttagttt ggttcccagc acccacatgc agttcacaac catatgtaat
     2881 tccatatgta attcttgtgc cttctcctgg cctctgtggg ccacggtctc cttgcccata
     2941 gtgtgtgcat aaacataatt ccaggcaaaa tatacacaca cagtaaattt ttaaacttag
     3001 aaaaaatgtt ccccttatgt aattgtttac ctaactgtaa atacttcatg ttttatacta
     3061 tgtattgtca cagacttgcc ataatataat tatataaact atagaattct taagactttt
     3121 atattgtatg aagttcattt cctacaagta cggttactct gatttggctc cgtaagatac
     3181 tatttacagt ctgtgtaaat agtgtcagtt ttctgtgtaa agagtaaaaa caaattgaaa
     3241 atctgtatat gtagtacctt agtctctgaa ggcaggaggc aaatttgaga agctggtaaa
     3301 ataatatatt tttctagtgt aaaggatgga agctgtgaac cttttctgtg cttagtaatt
     3361 tgcttgtaga actaacttat aaataaaagt gtgagatgga ttta
//
