LOCUS       NM_001408907            3229 bp    mRNA    linear   ROD 23-APR-2024
DEFINITION  Rattus norvegicus endogenous retrovirus group V member 2, envelope
            (Ervv-2), mRNA.
ACCESSION   NM_001408907 XM_039106575
VERSION     NM_001408907.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3229)
  AUTHORS   Pramono,D., Sugimoto,K., Kimura,T., Miyake,A. and Nishigaki,K.
  TITLE     Characterization of the endogenous retrovirus-derived
            placenta-specific soluble protein EnvV-Fca from domestic cats
  JOURNAL   FEBS Lett (2024) In press
   PUBMED   38604984
  REMARK    Publication Status: Available-Online prior to print
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jul 1, 2022 this sequence version replaced XM_039106575.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ222062.1, FQ131046.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMN09345330
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-384               JAXUCZ010000003.1  139587526-139587909 c
            385-3229            JAXUCZ010000003.1  139582024-139584868 c
FEATURES             Location/Qualifiers
     source          1..3229
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..3229
                     /gene="Ervv-2"
                     /gene_synonym="Erv3"
                     /note="endogenous retrovirus group V member 2, envelope"
                     /db_xref="GeneID:103691893"
                     /db_xref="RGD:9302596"
     exon            1..384
                     /gene="Ervv-2"
                     /gene_synonym="Erv3"
                     /inference="alignment:Splign:2.1.0"
     exon            385..3229
                     /gene="Ervv-2"
                     /gene_synonym="Erv3"
                     /inference="alignment:Splign:2.1.0"
     CDS             678..1280
                     /gene="Ervv-2"
                     /gene_synonym="Erv3"
                     /note="putative endogenous retrovirus group FC1 Env
                     polyprotein; putative ERV-F(c)1 provirus ancestral Env
                     polyprotein; endogenous retroviral sequence 3"
                     /codon_start=1
                     /product="endogenous retrovirus group V member 2, envelope
                     precursor"
                     /protein_id="NP_001395836.1"
                     /db_xref="GeneID:103691893"
                     /db_xref="RGD:9302596"
                     /translation="MGFNLMMLFCLALFPSALSWNLNWKPLAPQGPKLAKPVLKAWKF
                     QVVALDNHNKTIASTFCPVTGCASTISLTFDIRDTCQGKCIQDFYNAMMSPIYVCFVY
                     EQTRSDCKDPNYGGCPHWGCKYHSTWPRWGGENPSRLNSVDWHTKVTYSIPDPWDDRW
                     RTGVEGHIYRHNEKDTGYDRKTRIRIFRSLDRFIPPNSSM"
ORIGIN      
        1 gagaatcccg agtctctgtg tgcatctggc tagtatctca taaaacctct tctttgctaa
       61 aattcactca ttgtcagact tcgtgaatct tgaatgaccc ctggtccagg acaacttgag
      121 actccacgga gatccaggcg ttcagcctga ttcacgtttt cctgaccagc cttgaccagg
      181 gctcctggtg tacccagagc caagactttg cttaagctta aggagccacc agtcctcaac
      241 gcctagatcc cactgaggag ccctgagacc ctgggacact ctgatctact gagaaatttg
      301 gataagccta aagtttagag gccgccactg acaggttctc cacgcctgga ttgtgggaag
      361 gtggcatcgg aagccctctc agaggctcag cagctgactc aggacgctgt aacctcttca
      421 tttaaggctg ctcttagagg tccactgctt tgacacacac tttccaggat caagagacac
      481 cacgctgaga caccaggacc ctgttagaag agaccacgtc atcatcctga ccatccctgt
      541 gctgtcaaag tagacggagg tagtctgcac ctggatacat cactctcagg tcaagtgtcc
      601 cactgggaac aagacccagt taaagaaaag tggactgtca ccaagacctg caaagatcca
      661 ctaaagataa gagtaccatg ggttttaacc taatgatgtt gttttgtctg gctctatttc
      721 cttcagccct ttcctggaat cttaattgga aacccctagc tccacagggt cctaaattgg
      781 ccaaaccagt ccttaaggca tggaagttcc aggtggttgc cttagataat cacaacaaga
      841 ccatagcttc taccttctgt ccagtgacag gatgtgctag tactataagc ctcacctttg
      901 atataaggga cacctgccaa gggaaatgta tacaggactt ctacaatgct atgatgtctc
      961 ctatatatgt ttgtttcgta tatgagcaaa ctcgctcaga ctgtaaggac ccaaattatg
     1021 gaggatgccc acactggggc tgcaaatatc atagtacttg gcccaggtgg ggaggagaaa
     1081 atccatccag actcaactca gttgattggc atacgaaggt cacctactcg atccctgacc
     1141 cttgggatga cagatggaga acaggggttg agggtcatat ctacagacat aatgagaagg
     1201 atacaggcta tgacaggaag actaggatac gcatctttag aagtttagac agatttattc
     1261 ctccaaattc ctctatgtga tgctaaaacc aaaccagcta ctatacccac acctggtcct
     1321 gtttctgatg tcacaggctg acaccacttt gtactaccac cacctttctc tctctctctc
     1381 tcttcccact taccctactt ctccgacctc ctttgaattc ctaatgacat gttactatca
     1441 gtatacttgc tcatgaatgt tactaaccca aatattatgc ctgattgttg gccccgaacc
     1501 ctacaaaact ctcacattat gtaggactca ctgtacatca gaagcccatt ctgccactcc
     1561 cttggccaat tgtccatggg tgtgtctttc cacccaagca tcaaatttct tcacgtgggc
     1621 caaatccaag gtgaggggaa tctgtttcta ctcaaagagc tatggtatat ctaaatcctc
     1681 ctttaagaac aaatgaaggt tcttcataaa tatttctcag ttcctggtaa cactttttca
     1741 agtgctgctt ccttcctccc ttccttcttt tgtccctttc tcttttcctt ccttccttcc
     1801 ttccttcctt ccttccttcc ttccttcctt ccttccttcc ccacttggca gggcaactgc
     1861 tgctgaggcc agagtagtgg gtgccaacgt agggtagcca tggagacatc ttgagagctc
     1921 tgggccagag agtctgccga gtctggctgg ctgaataaga ctgctgacgc catgtggtgc
     1981 tggcactagc gtgagatgga gttcctttat ttaatattta ccgccacagt ttggctcacc
     2041 agtacggagg aactgcatcc atgcttacct atctggcaca tgcagaagcc cccaaattct
     2101 gtatcttggt attcctgttc ccctgaaaat atatttatga tgatggtcca gcagggagag
     2161 agtacttata ttcacaaacc ctgccagtcc cctggtccag gaaaaaaagc aaaatgtgaa
     2221 attcactgcc tcataccttg cttaatcctc ttacgcttaa gtagagcaga aactactaat
     2281 ggtgtcacgg aaacaacagt ggctgatgct aacttcaaaa ccatagaatg tcaaacaacc
     2341 caagatctgc ccatattaga aaaatctatt gtcaagctag aagaacagat ggatttatta
     2401 gctggaggta gttttatgca gagcaaggag ggctttagag gagaattgtt gcttatatgc
     2461 aaaccactca ggaatcatta gagataatgt ggctgtgctc tggaaaaacc tcatagaaag
     2521 agggagacga atggttcccc ttctcattct gaggctcctc ctgattactg tgcctcctgg
     2581 ctcagtacct ccaggtaact ctgctgtcag ctacacttag ctctcctgct cttgccgatt
     2641 gccgttggat cctgcaccag taatgcttaa ctgaatacat aaattcacac ttcgaggcta
     2701 ctaaactaat ggttatctgg tcccaagatg aataggcacc caccaccaag tcaaggtttg
     2761 actcagaaca caactcaagg ggagaatgtg atgctgatta ccactgtgtg caattgttct
     2821 agcttataca tttttgtaaa gtgtaccctg tcagttaact tgccccaaat ggaggagttc
     2881 ttggaatatg taggctattt tcaaaactgc ctggtctagt aaaaatgttg aactacctat
     2941 gctgttctga caagataatg gtcacgaagt taaccactgg ttctgcttct gtatgaaaaa
     3001 tgcttgcttg ctcaagataa tcaagatgtg tctgcaaggc attgttatga acagtaagct
     3061 ctgcctgcac ataggcaggg tgtgtgctaa ctcctctctc aaactgtatc cttgtgggtt
     3121 ttgtctttat aaaccccaga ctaacaatag ctggagacac actttgagat tcccgagtct
     3181 ctggtgtggt cctggccaat atctaataaa gcccctttgt tacaattca
//
