LOCUS       XM_039100111            1541 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ER membrane-associated RNA degradation
            (Ermard), transcript variant X12, mRNA.
ACCESSION   XM_039100111
VERSION     XM_039100111.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100111.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1541
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1541
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /note="ER membrane-associated RNA degradation; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 1 long SRA read, 2 Proteins, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 34 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:361485"
                     /db_xref="RGD:1309374"
     CDS             120..1442
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /codon_start=1
                     /product="endoplasmic reticulum membrane-associated RNA
                     degradation protein isoform X7"
                     /protein_id="XP_038956039.1"
                     /db_xref="GeneID:361485"
                     /db_xref="RGD:1309374"
                     /translation="MEILTGDSITTCLSPLVHDLICNLGFELTEICDINSIVTQNGEV
                     RWKAITDRVSYAELGHSLDYRQSVQRLGPVCEAIHLHISSLSRAQFETQYSPWYQWTT
                     SPELFLEIYDALESSQSAAISLSVMKLASCLERALGDVFLLIGNECPFLLRDLLASAE
                     LAHVFGHAVMDVLKVFIGSPCGLNLRNVLWHGFASPQDIPPKYCSALLLLTAGLGQLL
                     KSYLHHTKVQLAHRPFVTLTNLEDVIVFPGVTDKVLSALETVMTKSSFLLKIMLPYWE
                     LAVSKFKSHRFADCTMLLLSQLEAGLRRVFATVNKCPDRLLTAESTILYTTFDEILAK
                     HMSDGSINQLPCFLGEPAMDFLWDFLNYQEGPRIRDRLSHGEINIREFPKAAASQLLT
                     FCLVLLLRFTEEDTLSELKEEAAIQLLVSLAERYRSRCHPAFQLQKQS"
ORIGIN      
        1 gcatcccgga agttggagaa gagcgaagag gagcgagtca tcagagagcg ccgcatcccg
       61 gaaaccgggg aggagggacg cgcgagtcat cagaaagcgc cccgacctga gcggaagcga
      121 tggagatttt aacaggggat tccattacca catgcctttc tcctttagtg catgacttga
      181 tttgtaacct tgggtttgaa ctcactgaaa tttgtgatat caatagcatt gtaacccaaa
      241 atggtgaagt acgctggaaa gcaattacag accgtgtgag ctatgcagaa ttagggcaca
      301 gtctggacta caggcaaagt gtgcagcgct tgggtcctgt gtgtgaggcc atccatctac
      361 acatctcatc tctgagcaga gcacagtttg aaactcagta ttcaccatgg taccagtgga
      421 caacttctcc agagctgttt cttgaaatat acgatgcctt ggagagctcg cagtctgctg
      481 ccatctccct cagcgtgatg aaactagctt cctgtctgga acgagcctta ggcgatgtat
      541 ttttactgat tgggaatgag tgtccctttc tcctaagaga tcttcttgca tctgcagagc
      601 ttgcacatgt ctttggacat gctgtgatgg acgtactaaa agtcttcatc gggtctccct
      661 gtggactcaa cctgagaaac gtcttgtggc atggctttgc ttcccctcaa gatattcctc
      721 caaaatactg ttcagccttg ttgctgttga cagcaggact gggtcagtta ctgaagagtt
      781 accttcacca cacaaaagtc cagttggcac atcgaccttt tgtaacactc acaaacctag
      841 aggatgtgat tgtttttcct ggtgtgactg acaaggtact ctcagcgtta gagacagtga
      901 tgacgaaatc cagctttcta ttaaaaatca tgttgccata ttgggagctg gcagtgagca
      961 agtttaagtc gcacaggttt gccgactgca ccatgctgtt gctgtcacag ctagaagctg
     1021 gactcaggag agtttttgct acagttaata aatgtcctga tagactgctc acagctgagt
     1081 caacaattct atataccacg ttcgatgaaa tactagcaaa acacatgagt gatggtagca
     1141 tcaaccagct tccgtgtttc ctgggggagc ctgccatgga cttcttgtgg gatttcctga
     1201 actatcagga gggtcctcgt atccgggatc gtttaagcca cggggagatc aacatacgtg
     1261 aatttcccaa agcagcagca agccagctgc tcacattctg cctggtgctc ctgctcagat
     1321 tcactgagga ggacacactg tcagaactaa aggaggaagc agcaatacag ttgctggtta
     1381 gtcttgcaga acgttacagg tctcgctgcc atccagcttt ccagctgcaa aaacagagtt
     1441 aaaggtggct tcagtctcaa ggatgacgtg tggagtgttt agcatggagc ctggcttgct
     1501 gctgggacca gtcacttccc aagatgagaa gcaagtttta c
//
