LOCUS       NM_001419620            2469 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus ER membrane-associated RNA degradation (Ermard),
            mRNA.
ACCESSION   NM_001419620 XM_002728660
VERSION     NM_001419620.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Apr 13, 2023 this sequence version replaced XM_002728660.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643290.713.1,
                                           SRR26360172.859485.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-27                JAXUCZ010000001.1  64656529-64656555
            28-196              JAXUCZ010000001.1  64657166-64657334
            197-336             JAXUCZ010000001.1  64657894-64658033
            337-438             JAXUCZ010000001.1  64659209-64659310
            439-528             JAXUCZ010000001.1  64659889-64659978
            529-626             JAXUCZ010000001.1  64661636-64661733
            627-763             JAXUCZ010000001.1  64662300-64662436
            764-878             JAXUCZ010000001.1  64663067-64663181
            879-981             JAXUCZ010000001.1  64663952-64664054
            982-1011            JAXUCZ010000001.1  64664400-64664429
            1012-1080           JAXUCZ010000001.1  64665217-64665285
            1081-1254           JAXUCZ010000001.1  64666365-64666538
            1255-1338           JAXUCZ010000001.1  64668988-64669071
            1339-1415           JAXUCZ010000001.1  64670982-64671058
            1416-1541           JAXUCZ010000001.1  64671527-64671652
            1542-1760           JAXUCZ010000001.1  64671891-64672109
            1761-1874           JAXUCZ010000001.1  64673218-64673331
            1875-2469           JAXUCZ010000001.1  64675209-64675803
FEATURES             Location/Qualifiers
     source          1..2469
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..2469
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /note="ER membrane-associated RNA degradation"
                     /db_xref="GeneID:361485"
                     /db_xref="RGD:1309374"
     exon            1..27
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     CDS             22..2058
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /codon_start=1
                     /product="endoplasmic reticulum membrane-associated RNA
                     degradation protein"
                     /protein_id="NP_001406549.1"
                     /db_xref="GeneID:361485"
                     /db_xref="RGD:1309374"
                     /translation="MEILTGDSITTCLSPLVHDLICNLGFELTEICDINSIVTQNGEV
                     RWKAITDRVSYAELGHSLDYRQSVQRLGPVCEAIHLHISSLSRAQFETQYSPWYQWTT
                     SPELFLEIYDALESSQSAAISLSVMKLASCLERALGDVFLLIGNECPFLLRDLLASAE
                     LAHVFGHAVMDVLKVFIGSPCGLNLRNVLWHGFASPQDIPPKYCSALLLLTAGLGQLL
                     KSYLHHTKVQLAHRPFVTLTNLEDVIVFPGVTDKVLSALETVMTKSSFLLKIMLPYWE
                     LAVSKFKSHRFADCTMLLLSQLEAGLRRVFATVNKCPDRLLTAESTILYTTFDEILAK
                     HMSDGSINQLPCFLGEPAMDFLWDFLNYQEGPRIRDRLSHGEINIREFPKAAASQLLT
                     FCLVLLLRFTEEDTLSELKEEAAIQLLVSLAERYRSRCHPAFQLQKQVLSCEKSLRMW
                     PVLPLPEECCQEAGRSEGNSEACACNSLISKILCELCHYLPASACAINGLDGLPSEKW
                     SQLLNELCNTRIPTLFCPKIVLEVLVVLRGISSQCQRVSDQVIASLQLRHRQWVEHTL
                     RSRQRQNYVRMLSSVGLLCPVLSLILLLLALELVSVHAVHGKDAQERQQYLRFLKLIL
                     QYTENLVAYTSRQKNKWNEAVSLTRAVLLRIWTFSEKKQMLIHLTKNTNKVDTG"
     exon            28..196
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     exon            197..336
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     exon            337..438
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     exon            439..528
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     exon            529..626
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     exon            627..763
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     exon            764..878
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     exon            879..981
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     exon            982..1011
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     exon            1012..1080
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     exon            1081..1254
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     exon            1255..1338
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     exon            1339..1415
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     exon            1416..1541
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     exon            1542..1760
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     exon            1761..1874
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
     exon            1875..2469
                     /gene="Ermard"
                     /gene_synonym="RGD1309374; RGD1562376"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccccgacct gagcggaagc gatggagatt ttaacagggg attccattac cacatgcctt
       61 tctcctttag tgcatgactt gatttgtaac cttgggtttg aactcactga aatttgtgat
      121 atcaatagca ttgtaaccca aaatggtgaa gtacgctgga aagcaattac agaccgtgtg
      181 agctatgcag aattagggca cagtctggac tacaggcaaa gtgtgcagcg cttgggtcct
      241 gtgtgtgagg ccatccatct acacatctca tctctgagca gagcacagtt tgaaactcag
      301 tattcaccat ggtaccagtg gacaacttct ccagagctgt ttcttgaaat atacgatgcc
      361 ttggagagct cgcagtctgc tgccatctcc ctcagcgtga tgaaactagc ttcctgtctg
      421 gaacgagcct taggcgatgt atttttactg attgggaatg agtgtccctt tctcctaaga
      481 gatcttcttg catctgcaga gcttgcacat gtctttggac atgctgtgat ggacgtacta
      541 aaagtcttca tcgggtctcc ctgtggactc aacctgagaa acgtcttgtg gcatggcttt
      601 gcttcccctc aagatattcc tccaaaatac tgttcagcct tgttgctgtt gacagcagga
      661 ctgggtcagt tactgaagag ttaccttcac cacacaaaag tccagttggc acatcgacct
      721 tttgtaacac tcacaaacct agaggatgtg attgtttttc ctggtgtgac tgacaaggta
      781 ctctcagcgt tagagacagt gatgacgaaa tccagctttc tattaaaaat catgttgcca
      841 tattgggagc tggcagtgag caagtttaag tcgcacaggt ttgccgactg caccatgctg
      901 ttgctgtcac agctagaagc tggactcagg agagtttttg ctacagttaa taaatgtcct
      961 gatagactgc tcacagctga gtcaacaatt ctatatacca cgttcgatga aatactagca
     1021 aaacacatga gtgatggtag catcaaccag cttccgtgtt tcctggggga gcctgccatg
     1081 gacttcttgt gggatttcct gaactatcag gagggtcctc gtatccggga tcgtttaagc
     1141 cacggggaga tcaacatacg tgaatttccc aaagcagcag caagccagct gctcacattc
     1201 tgcctggtgc tcctgctcag attcactgag gaggacacac tgtcagaact aaaggaggaa
     1261 gcagcaatac agttgctggt tagtcttgca gaacgttaca ggtctcgctg ccatccagct
     1321 ttccagctgc aaaaacaggt gctgagctgt gagaaaagcc tcaggatgtg gcctgtgctg
     1381 cctttgccag aagagtgctg tcaggaagca ggcagatcgg aaggtaattc ggaagcatgt
     1441 gcctgcaact ctttaattag caagattctg tgtgagctct gccactacct gcctgcgagt
     1501 gcctgcgcta taaatggctt ggacggtctt ccctcagaga agtggtccca gctgctcaat
     1561 gaactctgta acacacgcat tcctacactg ttctgcccca aaattgttct agaagttctg
     1621 gttgtgctcc gaggcatcag ctcccaatgc cagcgcgtat ctgaccaggt catcgcctct
     1681 ttgcagctga gacacaggca atgggtggag cacacgttgc gctctaggca gcgtcagaac
     1741 tatgtgcgca tgctcagcag tgttggactt ttgtgtcctg tgctttccct gattttgttg
     1801 ctccttgcac tggaattggt cagtgttcat gctgttcatg gtaaagatgc tcaggaacga
     1861 cagcagtatc tgaggttctt aaaactgatc ctccaataca ctgagaacct agtggcctat
     1921 accagccgac agaagaacaa atggaatgaa gccgtcagtc tcacacgtgc agttttgttg
     1981 agaatttgga cgttcagtga gaagaaacaa atgttaatac atttaaccaa aaacacaaat
     2041 aaagttgaca caggctgaca cgctttctgt cagaattgtc atctacgtgt ttccacacag
     2101 aagaaaaggc ttcacatcca gcacaattaa gaaacacata ccatggtagt gcatgagtga
     2161 ggccaggtga tagaagttta gagccttctt ttctccttac gtcttagtag aggaagcagt
     2221 tgcatgatac atgtacaaat tcaaggttct gaaaaatctt gagttgatga ttcttgttga
     2281 ttgaaggtgc tacctgtatg gccccagcca attgccaagt gtacttaaaa acaaggctca
     2341 ccctggcctg cagtacctgt agggctgctc agggctgacc aggtctatga aggaaataga
     2401 gaacagaaga cacagaaagc acatgtagag gttctgaaag ataatgaaat aaacggaatg
     2461 acttcttca
//
