LOCUS       XM_233435               1710 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ERI1 exoribonuclease family member 3
            (Eri3), mRNA.
ACCESSION   XM_233435
VERSION     XM_233435.7
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 10, 2024 this sequence was replaced by
            NM_001427171.1.
            
            On Jan 21, 2021 this sequence version replaced XM_233435.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-352               JACYVU010000162.1  45565445-45565796
            353-428             JACYVU010000162.1  45567854-45567929
            429-706             JACYVU010000162.1  45580046-45580323
            707-823             JACYVU010000162.1  45597179-45597295
            824-883             JACYVU010000162.1  45603541-45603600
            884-975             JACYVU010000162.1  45607041-45607132
            976-1048            JACYVU010000162.1  45630273-45630345
            1049-1132           JACYVU010000162.1  45669732-45669815
            1133-1148           JACYVU010000162.1  45669817-45669832
            1149-1710           JACYVU010000162.1  45692085-45692646
FEATURES             Location/Qualifiers
     source          1..1710
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1710
                     /gene="Eri3"
                     /note="ERI1 exoribonuclease family member 3; The sequence
                     of the model RefSeq transcript was modified relative to
                     its source genomic sequence to represent the inferred CDS:
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 33 ESTs, 7 long SRA reads, 4 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 215 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:313535"
                     /db_xref="RGD:1595859"
     CDS             218..1231
                     /gene="Eri3"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: ERI1 exoribonuclease 3"
                     /protein_id="XP_233435.5"
                     /db_xref="GeneID:313535"
                     /db_xref="RGD:1595859"
                     /translation="MATASPAADGGRGRPWEGGLVSWPPAPPLTLPWTWMGPSWGQHP
                     GHWGFPALTDPSASPAASLGIFEVRRVLDASGCSMLAPLQTGAARFSSYLLSRARKVL
                     GSHLFSPCGVPEFCSISTRKLAAHGFGASMAAMVPFPPQRYHYFLVLDFEATCDKPQI
                     HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQ
                     QVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCHYLGLPVADYFKQWINLK
                     KAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTS
                     KPF"
ORIGIN      
        1 tggactcgtg gtgctggctg ccgctgtcga ggctgcctgg aacgggctgt ggggagcggg
       61 cggagctggc cctgcttctg cctggccagc gccgcaggcg gcgcgggccg tgtccgctgc
      121 cgtcaacttc ccggagcgcc tgctgaggcc gagggagacg ccggggcctg cacctggaga
      181 gagcctgccg tgctggcccg gaggaggggg cgttgccatg gcgacagcct ctccggcagc
      241 tgacgggggg cgggggcggc cttgggaagg agggctggtc tcctggcccc ctgcccctcc
      301 ccttacgctc ccctggacct ggatgggccc gagctggggg caacaccctg ggcattgggg
      361 ctttccagct ctcacagacc catcagcatc tccagctgcc agtcttggca tcttcgaagt
      421 aaggagagtt ttagatgcct ctggatgttc aatgctagca cctttacaga ctggagcagc
      481 tcgattttct tcatatttac tttcaagagc aagaaaagtg ctgggctccc acttattttc
      541 tccctgtggt gttccggagt tctgttccat atccaccaga aagctggcgg cccacggctt
      601 tggcgcgtca atggcggcaa tggtgccctt ccctccccag aggtatcact actttttagt
      661 gctggacttt gaggccacat gcgacaagcc acagattcat cctcaggaaa tcattgagtt
      721 ccccatcctg aagttaaatg gccggaccat ggaaattgag tctacctttc acatgtatgt
      781 ccagcctgta gtccacccac agcttacccc cttctgtaca gagctcactg ggatcattca
      841 agccatggtg gatggccagc caagcctgca gcaagtgctg gagagggtcg atgagtggat
      901 ggcgaaggaa ggcctcttag atcccaacgt caagtcaatc tttgtcacct gtggagactg
      961 ggacttgaaa gtcatgcttc caggccagtg ccattattta ggcttgccag tggcggatta
     1021 cttcaagcag tggattaatc taaaaaaggc ttacagcttc gccatgggct gctggcccaa
     1081 gaatggacta ctagacatga acaagggcct cagcctgcaa cacataggcc ggccccacag
     1141 cggcattgat gattgcaaga acattgccaa catcatgaag acattggcat accgaggctt
     1201 catcttcaag cagacatcaa agcccttctg attggcagag gacaggatgg ggcaggacag
     1261 ggtagctgct tggcccaaac cagaatcatc ctctccctca ccagagggaa aagggagagt
     1321 ggcacagctc tgcgcccaga gtgtccccca gctgccctac aggcttgtgc cctgtgtgag
     1381 ggcttggcca cttggcccct ctggagcaga cactttgtgc cccaccccac tcccattcct
     1441 cagtctcagc ccagtattag cccctgccat tatgggcctg ggctaggggg aacccaggta
     1501 ctcactgcct tctccctggt acacaggctt ctgctggggc caccaagccc tccctgtgcc
     1561 cctcccatcc atagtgcatg gtgtgtggtg cccccagggc tccaggacag atcaggcccc
     1621 accttgtgtc caccccccac ccccaaaatc cctgctgtga acgtgccact tgaataaagt
     1681 cggggaaaca aggtcctagt gtgcaatgaa
//
