LOCUS       NM_001106533            1338 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus ERGIC and golgi 3 (Ergic3), mRNA.
ACCESSION   NM_001106533 XM_001066442 XM_215908
VERSION     NM_001106533.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1338)
  AUTHORS   Hong SH, Chang SH, Cho KC, Kim S, Park S, Lee AY, Jiang HL, Kim HJ,
            Lee S, Yu KN, Seo HW, Chae C, Kim KP, Park J and Cho MH.
  TITLE     Endoplasmic reticulum-Golgi intermediate compartment protein 3
            knockdown suppresses lung cancer through endoplasmic reticulum
            stress-induced autophagy
  JOURNAL   Oncotarget 7 (40), 65335-65347 (2016)
   PUBMED   27588471
REFERENCE   2  (bases 1 to 1338)
  AUTHORS   Wu M, Tu T, Huang Y and Cao Y.
  TITLE     Suppression subtractive hybridization identified differentially
            expressed genes in lung adenocarcinoma: ERGIC3 as a novel lung
            cancer-related gene
  JOURNAL   BMC Cancer 13, 44 (2013)
   PUBMED   23374247
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1338)
  AUTHORS   Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474050.2.
            
            [WARNING] On May 7, 2024 this sequence was replaced by
            NM_001106533.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_215908.4, XM_001066442.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ228199.1, FQ232583.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1338
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..1338
                     /gene="Ergic3"
                     /gene_synonym="Sdbcag84"
                     /note="ERGIC and golgi 3"
                     /db_xref="GeneID:296306"
                     /db_xref="RGD:1308144"
     exon            1..134
                     /gene="Ergic3"
                     /gene_synonym="Sdbcag84"
                     /inference="alignment:Splign:2.1.0"
     CDS             47..1198
                     /gene="Ergic3"
                     /gene_synonym="Sdbcag84"
                     /note="serologically defined breast cancer antigen 84"
                     /codon_start=1
                     /product="endoplasmic reticulum-Golgi intermediate
                     compartment protein 3"
                     /protein_id="NP_001100003.1"
                     /db_xref="GeneID:296306"
                     /db_xref="RGD:1308144"
                     /translation="MEALGKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLS
                     ELQYYLTTEVHPELYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHN
                     LFKKRLDKDGIPVSSEAERHELGKVEVTVFDPDSLDPNRCESCYGAESEDIKCCNSCE
                     DVREAYRRRGWAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAP
                     GKSFQQSHVHVHDLQSFGLDNINMTHYIKHLSFGEDYPGIVNPLDHTNVTAPQASMMF
                     QYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKL
                     TEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGKTT"
     exon            135..205
                     /gene="Ergic3"
                     /gene_synonym="Sdbcag84"
                     /inference="alignment:Splign:2.1.0"
     exon            206..293
                     /gene="Ergic3"
                     /gene_synonym="Sdbcag84"
                     /inference="alignment:Splign:2.1.0"
     exon            294..413
                     /gene="Ergic3"
                     /gene_synonym="Sdbcag84"
                     /inference="alignment:Splign:2.1.0"
     exon            414..507
                     /gene="Ergic3"
                     /gene_synonym="Sdbcag84"
                     /inference="alignment:Splign:2.1.0"
     exon            508..673
                     /gene="Ergic3"
                     /gene_synonym="Sdbcag84"
                     /inference="alignment:Splign:2.1.0"
     exon            674..731
                     /gene="Ergic3"
                     /gene_synonym="Sdbcag84"
                     /inference="alignment:Splign:2.1.0"
     exon            732..763
                     /gene="Ergic3"
                     /gene_synonym="Sdbcag84"
                     /inference="alignment:Splign:2.1.0"
     exon            764..860
                     /gene="Ergic3"
                     /gene_synonym="Sdbcag84"
                     /inference="alignment:Splign:2.1.0"
     exon            861..925
                     /gene="Ergic3"
                     /gene_synonym="Sdbcag84"
                     /inference="alignment:Splign:2.1.0"
     exon            926..1062
                     /gene="Ergic3"
                     /gene_synonym="Sdbcag84"
                     /inference="alignment:Splign:2.1.0"
     exon            1063..1118
                     /gene="Ergic3"
                     /gene_synonym="Sdbcag84"
                     /inference="alignment:Splign:2.1.0"
     exon            1119..1338
                     /gene="Ergic3"
                     /gene_synonym="Sdbcag84"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggctggaggg gcgggccggc tggtgtcccc tttccggccg gtccccatgg aggcgctggg
       61 gaagctgaag cagttcgatg cctaccctaa gactctggag gacttccggg tcaagacctg
      121 cgggggcgcc acggtgacca tcgtgagtgg ccttctcatg ctcctgctgt tcctgtctga
      181 gttgcagtat tatctcacca ccgaggtgca tcctgagctc tacgtggaca agtctcgggg
      241 ggataaactg aagatcaaca tcgatgttct tttcccacac atgccttgtg cctacttgag
      301 catcgatgcc atggatgtgg ccggggagca gcagctggat gtggagcaca acctgttcaa
      361 gaaacgactg gacaaggatg gcatccccgt gagctcagag gctgaacggc atgagcttgg
      421 gaaagtcgag gtgacagtgt ttgacccaga ctccctggac cccaatcgct gtgagagctg
      481 ctatggtgcg gaatcagaag atatcaagtg ctgtaacagt tgtgaagatg tgcgggaagc
      541 gtatcgccgc cgaggctggg ccttcaagaa cccagacact attgagcagt gtcgacggga
      601 gggcttcagc cagaagatgc aggagcagaa gaacgagggc tgccaggtgt acggcttctt
      661 ggaggtcaac aaggtggctg ggaacttcca ctttgcccct gggaagagct tccagcagtc
      721 ccatgtgcac gttcatgact tacagagctt tggccttgac aatatcaaca tgacccacta
      781 catcaagcac ttgtcattcg gggaggacta tcccggcatt gtgaaccccc tggaccacac
      841 caacgtcact gcaccgcaag cctccatgat gttccagtac tttgtgaagg tggtgcctac
      901 agtgtacatg aaagtggacg gggaggtgct gaggacaaac cagttctctg tgaccaggca
      961 cgagaaggtt gccaatggcc tactgggtga tcagggcctg ccgggggtct ttgtgctgta
     1021 tgagctctca ccaatgatgg tgaagctgac agagaaacac aggtccttca cgcacttcct
     1081 gacgggtgtg tgtgccatca ttggaggcat gtttacagtg gctggactca ttgactcact
     1141 catctaccac tcggctcggg ccatccagaa gaaaattgat ctggggaaga caacctagtt
     1201 ctcttccttc ccgtcgtcgt cgtccgtcca ccctctcttc ccctgtgatt ttatcctcca
     1261 gcctgtcacc tacccatcct cctcttgtcc tcagtcagcc cagcccaggg tgataaatat
     1321 gaattgtgat aggaatta
//
