LOCUS       NM_001394930            3176 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ERGIC and golgi 2 (Ergic2), transcript variant 1,
            mRNA.
ACCESSION   NM_001394930
VERSION     NM_001394930.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3176)
  AUTHORS   Yu,J., Chia,J., Canning,C.A., Jones,C.M., Bard,F.A. and
            Virshup,D.M.
  TITLE     WLS retrograde transport to the endoplasmic reticulum during Wnt
            secretion
  JOURNAL   Dev Cell 29 (3), 277-291 (2014)
   PUBMED   24768165
REFERENCE   2  (bases 1 to 3176)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   3  (bases 1 to 3176)
  AUTHORS   Yang,Y.F., Chou,M.Y., Fan,C.Y., Chen,S.F., Lyu,P.C., Liu,C.C. and
            Tseng,T.L.
  TITLE     The possible interaction of CDA14 and protein elongation factor
            1alpha
  JOURNAL   Biochim Biophys Acta 1784 (2), 312-318 (2008)
   PUBMED   17980171
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.2677425.1,
                                           SRR22582416.714817.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-372               JAXUCZ010000004.1  182854119-182854490 c
            373-515             JAXUCZ010000004.1  182848447-182848589 c
            516-624             JAXUCZ010000004.1  182846849-182846957 c
            625-671             JAXUCZ010000004.1  182844715-182844761 c
            672-742             JAXUCZ010000004.1  182843685-182843755 c
            743-783             JAXUCZ010000004.1  182841486-182841526 c
            784-885             JAXUCZ010000004.1  182838047-182838148 c
            886-981             JAXUCZ010000004.1  182837284-182837379 c
            982-1037            JAXUCZ010000004.1  182832704-182832759 c
            1038-1136           JAXUCZ010000004.1  182831167-182831265 c
            1137-1234           JAXUCZ010000004.1  182829897-182829994 c
            1235-1397           JAXUCZ010000004.1  182825116-182825278 c
            1398-1480           JAXUCZ010000004.1  182824051-182824133 c
            1481-3176           JAXUCZ010000004.1  182822225-182823920 c
FEATURES             Location/Qualifiers
     source          1..3176
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q44"
     gene            1..3176
                     /gene="Ergic2"
                     /gene_synonym="RGD1310606"
                     /note="ERGIC and golgi 2"
                     /db_xref="GeneID:297728"
                     /db_xref="RGD:1310606"
     exon            1..372
                     /gene="Ergic2"
                     /gene_synonym="RGD1310606"
                     /inference="alignment:Splign:2.1.0"
     exon            373..515
                     /gene="Ergic2"
                     /gene_synonym="RGD1310606"
                     /inference="alignment:Splign:2.1.0"
     CDS             410..1543
                     /gene="Ergic2"
                     /gene_synonym="RGD1310606"
                     /note="isoform 1 is encoded by transcript variant 1;
                     endoplasmic reticulum-Golgi intermediate compartment
                     protein 2"
                     /codon_start=1
                     /product="endoplasmic reticulum-Golgi intermediate
                     compartment protein 2 isoform 1"
                     /protein_id="NP_001381859.1"
                     /db_xref="GeneID:297728"
                     /db_xref="RGD:1310606"
                     /translation="MRRLNRRKTLSLVKELDAFPKVPDSYVETSASGGTVSLIAFTTM
                     ALLTIMEFSVYQDTWMKYEYEVDKDFSSKLRINIDITVAMKCHYVGADVLDLAETMVA
                     SADGLAYEPALFDLSPQQREWQRMLQLIQSRLQEEHSLQDVIFKSAFKSSSTALPPRE
                     DDSSLTPDACRIHGHLYVNKVAGNFHITVGKAIPHPRGHAHLAALVNHDSYNFSHRID
                     HLSFGELVPGIINPLDGTEKIAVDHNQMFQYFITVVPTKLHTYKISADTHQFSVTERE
                     RIINHAAGSHGVSGIFMKYDLSSLMVTVTEEHMPFWQFFVRLCGIIGGIFSTTGMLHG
                     IGKFIVEIICCRFRLGSYKPVHSVPFADGHTDNHLPLLENNTH"
     exon            516..624
                     /gene="Ergic2"
                     /gene_synonym="RGD1310606"
                     /inference="alignment:Splign:2.1.0"
     exon            625..671
                     /gene="Ergic2"
                     /gene_synonym="RGD1310606"
                     /inference="alignment:Splign:2.1.0"
     exon            672..742
                     /gene="Ergic2"
                     /gene_synonym="RGD1310606"
                     /inference="alignment:Splign:2.1.0"
     exon            743..783
                     /gene="Ergic2"
                     /gene_synonym="RGD1310606"
                     /inference="alignment:Splign:2.1.0"
     exon            784..885
                     /gene="Ergic2"
                     /gene_synonym="RGD1310606"
                     /inference="alignment:Splign:2.1.0"
     exon            886..981
                     /gene="Ergic2"
                     /gene_synonym="RGD1310606"
                     /inference="alignment:Splign:2.1.0"
     exon            982..1037
                     /gene="Ergic2"
                     /gene_synonym="RGD1310606"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1136
                     /gene="Ergic2"
                     /gene_synonym="RGD1310606"
                     /inference="alignment:Splign:2.1.0"
     exon            1137..1234
                     /gene="Ergic2"
                     /gene_synonym="RGD1310606"
                     /inference="alignment:Splign:2.1.0"
     exon            1235..1397
                     /gene="Ergic2"
                     /gene_synonym="RGD1310606"
                     /inference="alignment:Splign:2.1.0"
     exon            1398..1480
                     /gene="Ergic2"
                     /gene_synonym="RGD1310606"
                     /inference="alignment:Splign:2.1.0"
     exon            1481..3176
                     /gene="Ergic2"
                     /gene_synonym="RGD1310606"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaccacctga accacacagt gctgcccgcg ccttaaggtg cctagtgacc agttccggtc
       61 tgtagaggtg agagcctttc tactcggtgg gtctccgcgt caatccgaag ataacttccc
      121 ttcctagaaa gggacatgcc tcgtggtttc acttcgtttc cacgtagcca cgcccctttc
      181 aggttgaccg cgccgtttga ttacgtcacc caccatcaac acaggaaata tcgcgagttc
      241 tccacttgcg gtcccttcgg acacagtcag cggtgagaat tgcccttgtt ctcgcgagat
      301 cttcgtgtgc gcccggctcg ggcgacccgg gcttctgtga aacatggcgg tcggctggga
      361 ccgtaccact ggcatgacta tatgaaggaa aaggaaggtt tttctgaaga tgaggcgact
      421 gaatcggaga aaaaccttaa gtttggtgaa agagttagat gcctttccca aggttcctga
      481 cagctatgtg gagacatcag ccagtggggg aacagtttct ctaatagcat ttaccactat
      541 ggctttatta acaataatgg aattctcagt gtatcaagat acatggatga agtatgaata
      601 cgaagtagac aaggattttt ctagcaagtt gcgaatcaac atagacatta ccgttgccat
      661 gaagtgtcac tatgttggag cagatgtact ggatttagca gagaccatgg ttgcttctgc
      721 agatggtctg gcttatgaac cagcactgtt tgacctttca ccacagcaga gagagtggca
      781 gaggatgctg cagttgattc agagtaggct gcaagaagag cattcccttc aagacgtgat
      841 cttcaaaagt gcgtttaaaa gttcatcaac tgcactgcca ccaagggaag atgattcatc
      901 actgactcca gatgcgtgca gaatccatgg tcatctctat gtcaataaag tagcagggaa
      961 ttttcacata actgtgggca aggcaatccc acatcctcga gggcatgcac atttggcagc
     1021 acttgtcaac catgattctt acaacttttc tcacagaata gatcatttgt cttttggcga
     1081 gcttgttcca ggaattatta atcctttgga tggaactgaa aagattgctg tagatcacaa
     1141 ccagatgttc caatatttca ttacagttgt gccaacaaag ctacacacat acaagatttc
     1201 cgcagatacc catcagttct ctgtgacaga aagggaacgc atcatcaacc atgctgcagg
     1261 cagccacggc gtctctggaa tatttatgaa atacgatctc agttctctca tggtgacagt
     1321 cactgaggaa cacatgcctt tctggcagtt ttttgtaaga ctctgtggta ttattggagg
     1381 aatcttttca acaacaggca tgttacatgg aattggaaaa tttatagtgg aaataatttg
     1441 ctgtcgtttc agacttggat cctacaagcc cgtccattct gtcccctttg cggatggcca
     1501 cacagacaac cacttacctc ttctagagaa caacacacat tagcacctcg tgggtggaga
     1561 aaaacttttt gcctgagaca taaagccttt tctaataata aaatgttgtg caatatattc
     1621 aaagaaaaag aaaatatgag aacccggaaa cttacttatt taaaaaaaaa aaaaagaaaa
     1681 aacagccaag gaaaataaac aagctgaagt cgtcgtgtat acgttgtgtc tgttacaaat
     1741 gtcctagaag aaattatgca gctaactgga gactcaaccc agccaacagt gccaggtgag
     1801 gacagtgcct ccgaagctct cccagcaaac agacaatatg gaggcagggc ctcgaggatg
     1861 gacgtgaacc catacttaaa gaaaagggcg ttgataaatg aaaacgtatg tgtgcgtcct
     1921 ttttaaagat gtcagaataa aacgtgtaaa acatggaaac tagtctagac tttacaaact
     1981 gtaatcagct catgtggtta ataaaggaag cagggactga ccctgtgtta cagccatatt
     2041 aatgttaagc catattgaca agatggtgtt gtccagtttg gggttctggt gatggtcact
     2101 gctttccttt gaactccagt cgctgacttt cctgactgtt gaaggttgag tcttagaaga
     2161 cttaaggtga agtttcccaa ggccaggtgc acaagtgctg tggtgtgtaa caggtgtcac
     2221 tcgcagcttg tacaagggac tccataggga gaagaaaaca aatgtttaaa aagataaacg
     2281 ttcacaattt gtaaagcgtg aagggaaacg ccaagtgctg tgtgcttgtg aggagtggaa
     2341 aactggatag ctaattctga cgggcggagc agtgtcctta caagatgttc agtctgatgc
     2401 agcctaggca cagctgtaaa accggacagg gcgctgccct cagggctctg cacagaagtg
     2461 atgaggctac agtgacttga aggagccctg tccagtgctg ttagttagaa actgccagcc
     2521 tcttttccca ctgactctga agggcagaag ttaatcactg gaggttaagt cattgaaaga
     2581 gaagacggtt tcagtccctg tcagacacag gactgcattg acagtggtgg cttagcatgt
     2641 ggcctgtcac aaattagtgt ttcaagtgaa atgtttttaa tccttaaaaa cagctctctt
     2701 caaagagggt atcaatcagg gaaggaggag acgccaacaa acgatttagc agtatagtgc
     2761 gaaaaatggc attttgtaga aaataagaca ttttggttaa agtattaagt aagagtcaag
     2821 aggttaagtg actaatacta ttataatgtt ttaaaatttt ttaaatgggt ccaggaaact
     2881 tcaaattatg agtcttctct gaggtttttg ttttgttttt ccccttaaat tttatagttg
     2941 gtctagaaac agaacatctc cccagaagaa ttttgaagtt ggtcacttga gactgaatgt
     3001 ctactcgcta gggaattcag tcagttttca gggaagaaaa tactgattta gagttatttt
     3061 cagtattatg ttttttaaaa agatttaaga ttattttaaa ttatttcaat gttttctaaa
     3121 tgccacatta aaaattttga gatgtatctt ttccattaaa attgactgta caggaa
//
