LOCUS       NM_001398572            2855 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus endoplasmic reticulum-golgi intermediate
            compartment 1 (Ergic1), mRNA.
ACCESSION   NM_001398572 XM_039087126
VERSION     NM_001398572.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2855)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   2  (bases 1 to 2855)
  AUTHORS   Breuza,L., Halbeisen,R., Jeno,P., Otte,S., Barlowe,C., Hong,W. and
            Hauri,H.P.
  TITLE     Proteomics of endoplasmic reticulum-Golgi intermediate compartment
            (ERGIC) membranes from brefeldin A-treated HepG2 cells identifies
            ERGIC-32, a new cycling protein that interacts with human Erv46
  JOURNAL   J Biol Chem 279 (45), 47242-47253 (2004)
   PUBMED   15308636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Dec 20, 2021 this sequence version replaced XM_039087126.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.41964.1,
                                           SRR26643291.27279.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760393 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-125               JAXUCZ010000010.1  17131252-17131376   c
            126-187             JAXUCZ010000010.1  17081288-17081349   c
            188-260             JAXUCZ010000010.1  17076386-17076458   c
            261-355             JAXUCZ010000010.1  17066563-17066657   c
            356-480             JAXUCZ010000010.1  17062459-17062583   c
            481-585             JAXUCZ010000010.1  17057688-17057792   c
            586-646             JAXUCZ010000010.1  17056066-17056126   c
            647-747             JAXUCZ010000010.1  17053526-17053626   c
            748-870             JAXUCZ010000010.1  17050758-17050880   c
            871-2855            JAXUCZ010000010.1  17035615-17037599   c
FEATURES             Location/Qualifiers
     source          1..2855
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..2855
                     /gene="Ergic1"
                     /note="endoplasmic reticulum-golgi intermediate
                     compartment 1"
                     /db_xref="GeneID:287177"
                     /db_xref="RGD:1585015"
     exon            1..125
                     /gene="Ergic1"
                     /inference="alignment:Splign:2.1.0"
     CDS             106..978
                     /gene="Ergic1"
                     /note="endoplasmic reticulum-golgi intermediate
                     compartment (ERGIC) 1; mKIAA1181 protein-like"
                     /codon_start=1
                     /product="endoplasmic reticulum-Golgi intermediate
                     compartment protein 1"
                     /protein_id="NP_001385501.1"
                     /db_xref="GeneID:287177"
                     /db_xref="RGD:1585015"
                     /translation="MPFDFRRFDIYRKVPKDLTQPTYTGAIISICCCLFILFLFLSEL
                     TGFITTEVVNELYVDDPDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEVGHID
                     NSMKIPLNNGVGCRFEGQFSINKVPGNFHVSTHSATAQPQNPDMTHIIHKLSFGDTLQ
                     VQNVHGAFNALGGADRLTSNPLASHDYILKIVPTVYEDKSGKQRYSYQYTVANKEYVA
                     YSHTGRIIPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFT
                     ASEAWKKIQLGKIH"
     exon            126..187
                     /gene="Ergic1"
                     /inference="alignment:Splign:2.1.0"
     exon            188..260
                     /gene="Ergic1"
                     /inference="alignment:Splign:2.1.0"
     exon            261..355
                     /gene="Ergic1"
                     /inference="alignment:Splign:2.1.0"
     exon            356..480
                     /gene="Ergic1"
                     /inference="alignment:Splign:2.1.0"
     exon            481..585
                     /gene="Ergic1"
                     /inference="alignment:Splign:2.1.0"
     exon            586..646
                     /gene="Ergic1"
                     /inference="alignment:Splign:2.1.0"
     exon            647..747
                     /gene="Ergic1"
                     /inference="alignment:Splign:2.1.0"
     exon            748..870
                     /gene="Ergic1"
                     /inference="alignment:Splign:2.1.0"
     exon            871..2855
                     /gene="Ergic1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggctggcggg ggcggggcgg ccgaggaggc gttggcagcg ggctcggacc cacgcggcgc
       61 tgcggcccgc ctggcctgca acgctcccac cggctcggcg gcacgatgcc ctttgacttc
      121 aggaggtttg acatctacag gaaggtgccc aaggacctca cgcagccaac atatactggt
      181 gccattatct ccatctgctg ctgccttttc atcctcttcc tcttcttgtc agagctcact
      241 ggattcatca cgacagaagt ggtgaatgag ctctacgtcg atgacccaga caaggacagc
      301 ggaggcaaaa ttgacgtcag tctcaacatc agtttaccca atttgcactg tgaactggtc
      361 ggccttgata tccaagatga gatgggcaga catgaggtgg gtcatattga caactccatg
      421 aagatcccac tgaacaacgg agtcggctgt cgcttcgagg gccagttcag catcaacaag
      481 gtccccggca acttccatgt gtccacgcac agtgccacag cccagccaca gaacccggac
      541 atgacacaca tcatccacaa gctttccttt ggggatacac tacaggtcca gaatgttcat
      601 ggagccttca atgctctcgg gggagcagac agactcacct ccaaccccct ggcctcccac
      661 gattacatct tgaagatcgt gcccacggtg tatgaggaca agagtggcaa gcagcgctac
      721 tcctaccagt acaccgtggc caacaaggag tacgttgcct acagccacac gggccgaatt
      781 atccccgcca tctggttccg ctatgacctc agccccatca cagtcaagta cacagagaga
      841 aggcaaccgc tgtacaggtt catcaccaca atctgtgcca tcatcggcgg gaccttcact
      901 gtggccggca ttctggactc ctgcatcttc acagcctcag aagcgtggaa aaagatccag
      961 ctgggcaaaa ttcactgaca tcctgcccag cccagtgact gaggaccagg aaccccgcta
     1021 gccctgcctc cagcgtcctg tctccttctg tcttctctgg cccagcgtgt atgggaggag
     1081 ggggtgatgg taatgggtgg caccaggttc cgcagctacc tctctcccca tgttttagat
     1141 aaattaacac tgcctggagt catggtgtcc ctttccctgc agagccccaa gaccagggtc
     1201 aggcatgggg aggtactcca aggatgctgg tgacctcttg tgggaaggct gtagactttc
     1261 ctcggttagg ggatagccta gagtctaaac agacaagctt tcagacaggc ttcgacaatc
     1321 tttaagcccc accatttgga cacgctaaca gcttaatttg tctcccccca ccaaactccc
     1381 cctggcagcc aacctgctct ctcagccttg ggaccagact gcccaaaggt actgctgttt
     1441 ggcgctttct acatggaatg gtacttggtc agggaagccc gtggacatgg cgctatagct
     1501 ggaacttgct tctgcctcat tgcttcatgc ccagcgtaga gcccaggtct tatctctacc
     1561 ccaaccctgc cttccataga gcagatgccc agttgcttgg cagaatggtg gagactcaga
     1621 ttggcccacc ggtcctgagg cggctcacag gtgtcccttc ctctcttgtc tttgctcttc
     1681 tgaatccccc accaatgtgc ctcagctgct gtgctgtgcg gcattagcat ttcttggtga
     1741 agggactggt tcccactgca aagctccccc ccacacacac acacacacac acacacacac
     1801 acacacacac acacacacac ggttacattc tgcagtgcca agggatagga ccatgtgact
     1861 ggaaggtcat cctcagaaga ccgcataagg cacagtttgt acatttctgt ttaaaccaga
     1921 agcatccttt cctgtgaact acggatgatt gtgtcttgac atccaccttt ggtcccaagg
     1981 ccttagctgg gggaatgaag caggccagct tcttctctgt gcacctccac cctgcaggct
     2041 ctcaaagggt gcccagagct gggacccact tgctattgag atcccccccc ttagctgagc
     2101 acatgcttag ccccaggggg ctccagtgtc tctcccactt cctcctgagg tagatccctt
     2161 ttccgttctc cactcatcct tccctttctt tcccaaaggg aggggcattg gtccaggcat
     2221 gaattccacg cggggaattt tagctatgct ctcctgtcca gagagagcga gccgtgggcc
     2281 tgggcttcgt ttatattgag atgtttgcat acttttgtaa tgaagggagt ctccagtagg
     2341 gacttttggg gttttggggt gttttttttt ttttttttgg tttggtttgg tttggtttgg
     2401 ttttttgttt ttcttaaata atctcatatg ggtagctgga ttctctgcca tttgtaattt
     2461 ttgcctctga ttccaattag caaaacttcc ctttttatat gagttgactt ttattgtgta
     2521 tgtaaaactg cccctgagtt atttctggta tctggccact tggctagatt tatcttcttt
     2581 taaacattct gttccacggt ttaagaaacc agtcccttcg gtgtgtgaat ctgtcacctg
     2641 tggagggtgg gcagggtggg atggggtgga aactatgtgg catgcatatg agttgagacc
     2701 tcacttttgt gaggacacag gggatgtcag tttcccatgg aagagacgcc tctggcctgt
     2761 tgttcttgta aaggtattct caaggggaca tatgttttga gtctttccca ctcactggat
     2821 tcaattagat attaaaaggc tgcttttcag aaata
//
