LOCUS       XM_039102174            1603 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ERCC excision repair 8, CSA ubiquitin
            ligase complex subunit (Ercc8), transcript variant X2, mRNA.
ACCESSION   XM_039102174
VERSION     XM_039102174.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039102174.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1603
                     /gene="Ercc8"
                     /gene_synonym="Ckn1"
                     /note="ERCC excision repair 8, CSA ubiquitin ligase
                     complex subunit; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 7 ESTs, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 24 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:310071"
                     /db_xref="RGD:1311570"
     CDS             124..1275
                     /gene="Ercc8"
                     /gene_synonym="Ckn1"
                     /codon_start=1
                     /product="DNA excision repair protein ERCC-8 isoform X2"
                     /protein_id="XP_038958102.1"
                     /db_xref="GeneID:310071"
                     /db_xref="RGD:1311570"
                     /translation="MLSFLSARQSGLEDPLRLRRAQSTRRVLGLELNKDRDVERVHCS
                     GVNTLDIEPVEGRYMLSGGSDGVIVLYDLENASRQPYYTCKAVCSVGRSHPDVHKYSV
                     ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQAADVFNFEETVYSHHMSPAATKHCLVA
                     VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR
                     ASGCLLTLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSS
                     GDNTLVNYGKVCNSSRKGLKFTVSHGCNSEFVFVPYDSTIAMYAVYSGERLAMLKGHY
                     KSVDCCVFQPNFQNTSLLDDTTHIHAGAPSANEPFWKHRHTPNRRVVSV"
ORIGIN      
        1 gtaacgccgc tctcctttgg tcacgtcaca tcgctaattg gccaatggga gcccgtgttg
       61 ttgcatccgt tccaagctct gtcatggcgg catcccggcc tcaagccggt gtgtggaacc
      121 gagatgttga gctttttgtc cgctcgacag tcagggttgg aggaccctct tcgcttgcgt
      181 agagcgcagt ctacacggag ggtcctgggc ctggagttaa acaaagacag ggatgttgaa
      241 agagtccact gcagcggagt caacactctg gacattgaac ctgtcgaagg acgatacatg
      301 ttgtcaggtg gttccgatgg tgtgattgta ctctatgacc ttgagaacgc cagcagacag
      361 ccctattaca catgtaaagc agtgtgttcc gttggcagaa gccatcctga tgtccacaaa
      421 tacagcgtgg agacggttca gtggtatcct catgacactg gcatgttcac atccagctca
      481 tttgataaaa ctctgaaagt atgggataca aacacattgc aggctgcaga tgtgtttaat
      541 tttgaggaaa cagtttacag tcatcacatg tccccagcag ccaccaagca ctgtctggta
      601 gcagttggaa ctagaggacc caaggtacaa ctttgtgact taaagtctgg atcctgttct
      661 cacattctac agggtcacag acaggaaata ttggcagttt cctggtcacc acgctatgac
      721 tatatcttgg caacagcaag cgctgacagt agagtaaaat tatgggatgt gagaagagca
      781 tcaggatgtt tgcttactct tgaccagcat aacgggaaaa agtcacaagc tgttgaatca
      841 gcaaacactg ctcacaatgg gaaagttaac ggcttatgtt ttacaagtga cgggcttcac
      901 ctgctcacgg ttggcacaga caaccgaatg aggctctgga atagctccag cggggacaac
      961 acactggtaa actacgggaa agtgtgtaac agcagcagga aagggctgaa gttcactgtc
     1021 tcccatggct gcaactcaga gtttgtgttt gttccctacg acagcaccat tgccatgtat
     1081 gcagtctact caggagagcg gctcgccatg cttaagggac attacaaaag tgtcgactgc
     1141 tgtgtgtttc agcctaattt ccagaacacc agcctactgg atgataccac ccacatccat
     1201 gctggggctc cctcagcaaa tgaacctttc tggaaacacc gtcatacacc caaccgacgt
     1261 gttgtttctg tatgattcta aatctagcca ggtttgcaat gaagattgtc atagaactta
     1321 ggagttttgt tgaacatcct tgcttttctc cttcatatta actctggatc aggcttttgg
     1381 ttttggtatg tgtacgtggt atatattcac atgtacatgt gtacatacct atgtgtatgg
     1441 atggaagcca gagttgatca tcagtgttct gctctatcac tctttgccct ggttcattgg
     1501 gacaggatgt gtcactaaac ccgaagctgt cagtcttctg tctcatccgg attagcgcct
     1561 gcctatttac cattgtgtca ccacacctag ctgttttcca tga
//
