LOCUS       XM_039084555            3752 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ERCC excision repair 5, endonuclease
            (Ercc5), transcript variant X2, mRNA.
ACCESSION   XM_039084555
VERSION     XM_039084555.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039084555.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3752
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3752
                     /gene="Ercc5"
                     /note="ERCC excision repair 5, endonuclease; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     12 samples with support for all annotated introns"
                     /db_xref="GeneID:301382"
                     /db_xref="RGD:1586176"
     CDS             202..3651
                     /gene="Ercc5"
                     /codon_start=1
                     /product="DNA excision repair protein ERCC-5 isoform X2"
                     /protein_id="XP_038940483.1"
                     /db_xref="GeneID:301382"
                     /db_xref="RGD:1586176"
                     /translation="MMKSGIASGSDISIWLNQALKGVRDRHGNAIENAHLLTLFHRLC
                     KLLFFRIRPIFVFDGDAPLLKKQTLAKRRQKKDSASIDSRKTTEKLLKTFLKRQALKT
                     AFRSKRNEVLPSLTQVQREDDIYVLPPLQEEEKHSSEEEDEKQWQARMDQKQALQEEF
                     FHNPHAIDIESEDFSSLPPEVKHEILTDMKEFTKRRRTLFEAMPEESNDFSQYQLKGL
                     LKKNYLNQHIENVQKEMNQEHSGQIQRQYEDEGGFLKEVESRRVVAEDTSHYILIKGI
                     QGKKVVDVDLESLPSSSKEHSVSFNLKSSPYEKVKPESEPEATPPSPRTLHAIQVAML
                     GGSSEEEPESGEGGQSKERSAWATADAGSISPQTCAAIQRALDDDEEERMCASSDNLA
                     VEMLLGNGLKQEHADEVVVKGGGVPLDTASLLPSVTEVEECVASASNDKEQTASTHAS
                     STACHPGEVPKETVSPAHVVSEASQISSECEVAGRPVPLPSAFIETPCSYASGVLSER
                     ELTLAPPIRTHSHQRTSIDPEEPELQNGLCPPKNTCNSSHLSSDDETEGGQNPASKAG
                     STVHVPSEAVGNVENVSSSNAEEHGDFQKTIQLWEMPEAAARELISAPESLGPVEMES
                     EESESDGSFIEVQSVISNDELQIESSEISKHLSEKDAEEPKETLEEGSPRNTECLLQD
                     SSDIKAMKEHRKEDRGAEDSPDEWQDVNLEELDALESNLLAEQNSLEAQKQQQDRIAA
                     SVTGQMFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARH
                     VYKNFFNKNKFVEYYQYVDFYNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEIL
                     NEFPGRGLDPLLKFSEWWHKAQNNKKAAENPYDTKVKKKLRKLQLTPGFPNPAVADAY
                     LRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYPVLKQLNAHQTQLRID
                     SFFRLAQQEKQDAKHIKSHRLSRAVTCMLRKEREETAGELKKVPETLDKANGKTQKRS
                     QPNTRETSVPKRRRPSGNGGFLGNSYLSELPQESSSEEAEGSSMISAQQRRAAESSNV
                     SCSDLPDLVRDTPHGRDGYMSTSSSSEDGEDKAKAVLVTARPVFGKKKGKLKNMRRRK
                     KKI"
ORIGIN      
        1 gcggctgctg agcgctggag gagcgcggga cgggcgcctg cgcagtgact aggctttgtc
       61 cggaagctgg tgctgggaat tgtttggttg tcttccgatc cagcttgcag gcctgccctc
      121 attcgggccc attttgtgtc ccccgtgttt tagttctcac agcagagtgg ctacagagtt
      181 gtggagaata aggagattta aatgatgaaa tctggtatag cgtcaggctc tgatattagc
      241 atttggctaa accaagcact taaaggagtc cgagatcgcc atggaaatgc aatagaaaat
      301 gctcatcttc tcacattatt ccaccggctc tgcaaactct tgtttttccg catccgtcct
      361 atttttgtat ttgatggtga tgctccactg ctaaagaaac agaccttggc aaagagaagg
      421 cagaagaagg attctgcatc cattgactcg agaaaaacca cagagaagct tctgaaaacc
      481 tttctgaaga gacaggctct gaaaactgcc ttcagaagca aaagaaatga agtgctaccc
      541 agtcttactc aagttcaaag agaggatgac atctatgttt tgccaccttt acaagaggaa
      601 gaaaaacata gttcagaaga ggaagatgaa aagcaatggc aagcaagaat ggatcaaaag
      661 caagctttgc aggaagaatt ctttcataat cctcatgcca tagatatcga gtctgaggat
      721 ttcagcagcc tgcctcctga ggtaaagcat gagatcttga ctgacatgaa agagtttacc
      781 aagcgaagac ggacattgtt tgaagcaatg ccagaggagt ctaatgactt ttcacagtat
      841 cagctgaaag gcttgcttaa gaaaaactac ctaaaccagc acatagaaaa tgtccagaag
      901 gaaatgaacc aggaacattc aggacaaatc cagaggcaat atgaagacga gggaggcttt
      961 ctgaaggaag tcgagtcgag gagagtggtt gctgaagaca cctcacacta catcttgata
     1021 aaaggaattc aaggaaagaa agtcgtggat gtggatttag aatctcttcc ttcttccagc
     1081 aaagaacaca gtgtgtcctt caacctgaag tcatcacctt atgagaaagt gaagccagag
     1141 agcgagccag aggccacacc tccttctcca agaactttac acgctattca agtagccatg
     1201 ctgggaggta gctcagaaga ggagccggag agtggagaag gagggcagtc taaggagaga
     1261 agtgcgtggg ccactgcaga tgcaggctcc atttcaccac agacctgtgc agctattcag
     1321 agagctctgg atgatgatga agaggagaga atgtgtgcca gcagtgataa tctggccgtg
     1381 gaaatgctgc ttggaaatgg tctgaagcag gagcacgctg atgaagtggt agtaaaaggt
     1441 ggaggcgtgc cacttgacac agcatctctt ttacccagtg tgactgaggt agaggagtgt
     1501 gtggccagtg ccagcaatga caaagagcag acagcctcaa ctcatgcatc tagtactgct
     1561 tgtcatccag gtgaagtccc caaagaaaca gtatctcctg ctcatgtggt gagtgaagca
     1621 tctcagataa gtagtgagtg tgaggtcgct ggtaggccag ttccccttcc ctcagcattc
     1681 atagaaactc catgcagtta tgcctctggg gtcctcagtg aaagggaact caccctggca
     1741 cctccaataa gaacacattc tcatcagagg acgagcatag accctgaaga gcctgagcta
     1801 caaaatggac tctgcccacc caagaacacg tgtaattcct ctcatctttc aagtgatgat
     1861 gaaacagaag gtggacaaaa tcctgcttcc aaagcaggta gcacagttca tgtcccttca
     1921 gaggcagtag gtaacgtaga aaacgtgtcg tcttctaatg ctgaagaaca tggagatttc
     1981 cagaaaacta tccagctatg ggagatgcct gaggctgctg ccagggagct gatttcagcc
     2041 ccagagtccc tgggaccagt ggagatggag tctgaagaga gcgagtctga tggaagtttc
     2101 attgaggtgc agagtgtgat cagcaatgat gaacttcaaa tagagtcatc agagatttct
     2161 aagcatctct ctgaaaaaga tgcagaggaa cctaaagaaa ctctggagga aggaagcccc
     2221 aggaacacag agtgcctcct acaagacagc tctgacatca aggcaatgaa ggaacacaga
     2281 aaagaagaca gaggtgctga ggactcaccc gacgaatggc aagatgttaa tttggaggaa
     2341 ctggatgccc tggagagtaa cctcttagca gaacagaatt cactggaagc tcaaaaacag
     2401 cagcaagatc ggattgctgc ctctgtaaca ggccagatgt ttctggaaag ccaggaactc
     2461 ctgcgtctct ttggcattcc ctacatccag gctcccatgg aggcagaggc acagtgcgcc
     2521 attctggacc tcactgatca gacttctgga accattactg atgatagtga tatctggctg
     2581 tttggggccc ggcatgtcta taagaatttt tttaacaaaa acaagtttgt agagtactat
     2641 cagtatgtgg acttttacaa ccaattggga ctggaccgca acaaattaat caacttggct
     2701 tatctactgg gcagtgatta tactgaaggg attccaactg ttggctgtgt aacagccatg
     2761 gagattctca atgaattccc tggtcgaggc ctggacccac tcctaaaatt ctcagagtgg
     2821 tggcacaaag ctcaaaataa caagaaggct gcagaaaatc cctatgacac caaagtgaaa
     2881 aaaaaattac ggaagttgca gctgacacct ggtttcccca accctgcagt tgcagatgcc
     2941 tacctcaggc ctgtggtgga tgactccagg ggatcgtttc tgtggggcaa gcctgatgtt
     3001 gacaagatta gagaattttg tcagaggtat tttggctgga acaggatgaa gacagatgaa
     3061 tccctgtatc cagtactaaa gcaactgaat gcccaccaga cccagctacg gattgattcc
     3121 ttttttagac tagcccagca ggaaaaacaa gatgccaaac acataaagag ccataggctg
     3181 agtagagcag tgacttgtat gctaaggaaa gagagggaag agacagctgg tgagctgaag
     3241 aaagtgcctg agaccctgga caaagcaaac ggaaaaaccc agaaaagaag ccaaccaaac
     3301 acaagagaga cttcagtccc caaaagaagg aggccttcag gaaatggtgg gtttctaggg
     3361 aactcctacc tctcagaatt accccaggag tcttctagtg aggaggcaga aggttcatct
     3421 atgatcagtg cacaacagag aagagcagct gagtcatcaa atgtcagctg ctcggatttg
     3481 cctgacttag tgagagacac tcctcatggg agggatggct atatgtccac tagtagctcc
     3541 agtgaggatg gcgaggacaa agccaaggct gtcttagtga ctgctagacc tgtatttggg
     3601 aagaaaaagg ggaaactaaa gaatatgagg agaaggaaaa agaaaatcta attaaaaaca
     3661 aaaacaaaaa caaaaacagt catttagaaa aacagtgctt gcaatgaata tgtattgaaa
     3721 gcataagatt aaatctattt gtataatccg tt
//
