LOCUS       XM_039084554            3656 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ERCC excision repair 5, endonuclease
            (Ercc5), transcript variant X1, mRNA.
ACCESSION   XM_039084554
VERSION     XM_039084554.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 9, 2024 this sequence was replaced by
            NM_001426998.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3656
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3656
                     /gene="Ercc5"
                     /note="ERCC excision repair 5, endonuclease; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 1 long SRA read, 3 Proteins, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 120 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:301382"
                     /db_xref="RGD:1586176"
     CDS             49..3555
                     /gene="Ercc5"
                     /codon_start=1
                     /product="DNA excision repair protein ERCC-5 isoform X1"
                     /protein_id="XP_038940482.1"
                     /db_xref="GeneID:301382"
                     /db_xref="RGD:1586176"
                     /translation="MGVQGLWKLLECSGRPVSPEALEGKVLAVDISIWLNQALKGVRD
                     RHGNAIENAHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQKKDSASIDS
                     RKTTEKLLKTFLKRQALKTAFRSKRNEVLPSLTQVQREDDIYVLPPLQEEEKHSSEEE
                     DEKQWQARMDQKQALQEEFFHNPHAIDIESEDFSSLPPEVKHEILTDMKEFTKRRRTL
                     FEAMPEESNDFSQYQLKGLLKKNYLNQHIENVQKEMNQEHSGQIQRQYEDEGGFLKEV
                     ESRRVVAEDTSHYILIKGIQGKKVVDVDLESLPSSSKEHSVSFNLKSSPYEKVKPESE
                     PEATPPSPRTLHAIQVAMLGGSSEEEPESGEGGQSKERSAWATADAGSISPQTCAAIQ
                     RALDDDEEERMCASSDNLAVEMLLGNGLKQEHADEVVVKGGGVPLDTASLLPSVTEVE
                     ECVASASNDKEQTASTHASSTACHPGEVPKETVSPAHVVSEASQISSECEVAGRPVPL
                     PSAFIETPCSYASGVLSERELTLAPPIRTHSHQRTSIDPEEPELQNGLCPPKNTCNSS
                     HLSSDDETEGGQNPASKAGSTVHVPSEAVGNVENVSSSNAEEHGDFQKTIQLWEMPEA
                     AARELISAPESLGPVEMESEESESDGSFIEVQSVISNDELQIESSEISKHLSEKDAEE
                     PKETLEEGSPRNTECLLQDSSDIKAMKEHRKEDRGAEDSPDEWQDVNLEELDALESNL
                     LAEQNSLEAQKQQQDRIAASVTGQMFLESQELLRLFGIPYIQAPMEAEAQCAILDLTD
                     QTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVDFYNQLGLDRNKLINLAYLLG
                     SDYTEGIPTVGCVTAMEILNEFPGRGLDPLLKFSEWWHKAQNNKKAAENPYDTKVKKK
                     LRKLQLTPGFPNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDE
                     SLYPVLKQLNAHQTQLRIDSFFRLAQQEKQDAKHIKSHRLSRAVTCMLRKEREETAGE
                     LKKVPETLDKANGKTQKRSQPNTRETSVPKRRRPSGNGGFLGNSYLSELPQESSSEEA
                     EGSSMISAQQRRAAESSNVSCSDLPDLVRDTPHGRDGYMSTSSSSEDGEDKAKAVLVT
                     ARPVFGKKKGKLKNMRRRKKKI"
ORIGIN      
        1 ctaaagtgaa acaaaggccc tgcgaatccg gctaagagcg cctgcgccat gggagtgcag
       61 gggctgtgga agttgctgga gtgctctggc cgcccggtca gcccggaggc gctagagggc
      121 aaggtgctgg ccgtggatat tagcatttgg ctaaaccaag cacttaaagg agtccgagat
      181 cgccatggaa atgcaataga aaatgctcat cttctcacat tattccaccg gctctgcaaa
      241 ctcttgtttt tccgcatccg tcctattttt gtatttgatg gtgatgctcc actgctaaag
      301 aaacagacct tggcaaagag aaggcagaag aaggattctg catccattga ctcgagaaaa
      361 accacagaga agcttctgaa aacctttctg aagagacagg ctctgaaaac tgccttcaga
      421 agcaaaagaa atgaagtgct acccagtctt actcaagttc aaagagagga tgacatctat
      481 gttttgccac ctttacaaga ggaagaaaaa catagttcag aagaggaaga tgaaaagcaa
      541 tggcaagcaa gaatggatca aaagcaagct ttgcaggaag aattctttca taatcctcat
      601 gccatagata tcgagtctga ggatttcagc agcctgcctc ctgaggtaaa gcatgagatc
      661 ttgactgaca tgaaagagtt taccaagcga agacggacat tgtttgaagc aatgccagag
      721 gagtctaatg acttttcaca gtatcagctg aaaggcttgc ttaagaaaaa ctacctaaac
      781 cagcacatag aaaatgtcca gaaggaaatg aaccaggaac attcaggaca aatccagagg
      841 caatatgaag acgagggagg ctttctgaag gaagtcgagt cgaggagagt ggttgctgaa
      901 gacacctcac actacatctt gataaaagga attcaaggaa agaaagtcgt ggatgtggat
      961 ttagaatctc ttccttcttc cagcaaagaa cacagtgtgt ccttcaacct gaagtcatca
     1021 ccttatgaga aagtgaagcc agagagcgag ccagaggcca cacctccttc tccaagaact
     1081 ttacacgcta ttcaagtagc catgctggga ggtagctcag aagaggagcc ggagagtgga
     1141 gaaggagggc agtctaagga gagaagtgcg tgggccactg cagatgcagg ctccatttca
     1201 ccacagacct gtgcagctat tcagagagct ctggatgatg atgaagagga gagaatgtgt
     1261 gccagcagtg ataatctggc cgtggaaatg ctgcttggaa atggtctgaa gcaggagcac
     1321 gctgatgaag tggtagtaaa aggtggaggc gtgccacttg acacagcatc tcttttaccc
     1381 agtgtgactg aggtagagga gtgtgtggcc agtgccagca atgacaaaga gcagacagcc
     1441 tcaactcatg catctagtac tgcttgtcat ccaggtgaag tccccaaaga aacagtatct
     1501 cctgctcatg tggtgagtga agcatctcag ataagtagtg agtgtgaggt cgctggtagg
     1561 ccagttcccc ttccctcagc attcatagaa actccatgca gttatgcctc tggggtcctc
     1621 agtgaaaggg aactcaccct ggcacctcca ataagaacac attctcatca gaggacgagc
     1681 atagaccctg aagagcctga gctacaaaat ggactctgcc cacccaagaa cacgtgtaat
     1741 tcctctcatc tttcaagtga tgatgaaaca gaaggtggac aaaatcctgc ttccaaagca
     1801 ggtagcacag ttcatgtccc ttcagaggca gtaggtaacg tagaaaacgt gtcgtcttct
     1861 aatgctgaag aacatggaga tttccagaaa actatccagc tatgggagat gcctgaggct
     1921 gctgccaggg agctgatttc agccccagag tccctgggac cagtggagat ggagtctgaa
     1981 gagagcgagt ctgatggaag tttcattgag gtgcagagtg tgatcagcaa tgatgaactt
     2041 caaatagagt catcagagat ttctaagcat ctctctgaaa aagatgcaga ggaacctaaa
     2101 gaaactctgg aggaaggaag ccccaggaac acagagtgcc tcctacaaga cagctctgac
     2161 atcaaggcaa tgaaggaaca cagaaaagaa gacagaggtg ctgaggactc acccgacgaa
     2221 tggcaagatg ttaatttgga ggaactggat gccctggaga gtaacctctt agcagaacag
     2281 aattcactgg aagctcaaaa acagcagcaa gatcggattg ctgcctctgt aacaggccag
     2341 atgtttctgg aaagccagga actcctgcgt ctctttggca ttccctacat ccaggctccc
     2401 atggaggcag aggcacagtg cgccattctg gacctcactg atcagacttc tggaaccatt
     2461 actgatgata gtgatatctg gctgtttggg gcccggcatg tctataagaa tttttttaac
     2521 aaaaacaagt ttgtagagta ctatcagtat gtggactttt acaaccaatt gggactggac
     2581 cgcaacaaat taatcaactt ggcttatcta ctgggcagtg attatactga agggattcca
     2641 actgttggct gtgtaacagc catggagatt ctcaatgaat tccctggtcg aggcctggac
     2701 ccactcctaa aattctcaga gtggtggcac aaagctcaaa ataacaagaa ggctgcagaa
     2761 aatccctatg acaccaaagt gaaaaaaaaa ttacggaagt tgcagctgac acctggtttc
     2821 cccaaccctg cagttgcaga tgcctacctc aggcctgtgg tggatgactc caggggatcg
     2881 tttctgtggg gcaagcctga tgttgacaag attagagaat tttgtcagag gtattttggc
     2941 tggaacagga tgaagacaga tgaatccctg tatccagtac taaagcaact gaatgcccac
     3001 cagacccagc tacggattga ttcctttttt agactagccc agcaggaaaa acaagatgcc
     3061 aaacacataa agagccatag gctgagtaga gcagtgactt gtatgctaag gaaagagagg
     3121 gaagagacag ctggtgagct gaagaaagtg cctgagaccc tggacaaagc aaacggaaaa
     3181 acccagaaaa gaagccaacc aaacacaaga gagacttcag tccccaaaag aaggaggcct
     3241 tcaggaaatg gtgggtttct agggaactcc tacctctcag aattacccca ggagtcttct
     3301 agtgaggagg cagaaggttc atctatgatc agtgcacaac agagaagagc agctgagtca
     3361 tcaaatgtca gctgctcgga tttgcctgac ttagtgagag acactcctca tgggagggat
     3421 ggctatatgt ccactagtag ctccagtgag gatggcgagg acaaagccaa ggctgtctta
     3481 gtgactgcta gacctgtatt tgggaagaaa aaggggaaac taaagaatat gaggagaagg
     3541 aaaaagaaaa tctaattaaa aacaaaaaca aaaacaaaaa cagtcattta gaaaaacagt
     3601 gcttgcaatg aatatgtatt gaaagcataa gattaaatct atttgtataa tccgtt
//
