LOCUS       XM_039087584            3688 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus excision repair cross-complementing
            rodent repair deficiency, complementation group 4-like 1 (Ercc4l1),
            mRNA.
ACCESSION   XM_039087584
VERSION     XM_039087584.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3688
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3688
                     /gene="Ercc4l1"
                     /note="excision repair cross-complementing rodent repair
                     deficiency, complementation group 4-like 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 1 Protein, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:103693257"
                     /db_xref="RGD:1304845"
     CDS             51..2696
                     /gene="Ercc4l1"
                     /codon_start=1
                     /product="DNA repair endonuclease XPF"
                     /protein_id="XP_038943512.1"
                     /db_xref="GeneID:103693257"
                     /db_xref="RGD:1304845"
                     /translation="MERGLPGERQSMAPLLEYERQQVLELLDSDGLVVCARGLGADRL
                     LYLFLRLHCHPACLVLVLNTQPAEEEYFINQLKTEGVKHLKVKNVKYLNCILVYRAHR
                     IIESCQEAFILRLFRQKNKLGFIKAFTDNAVAFDTGFCHVERVMRNLFMKKLYLWPRF
                     HVAVNSFLEQHKPEVVEIRVSMTLAMLAIQTAILDVLNACLKELKYHNLSLEVEDLSL
                     ENALGKPFDKTICHYLDPLWHQLGAKTKSLVQDLKILRTLLQYLSQYDCVTFLNLLES
                     LRATEKVFGQNSGWLFLDASTSMFVNARARVYRVPDVKLSKKTKTSEKMAGPEEQETK
                     KELVLESNPKWEALTEVLKEIETENKESEALGGPGQVLICASDDRTCCQLRDYLTAGA
                     EAFLLRLYRKTFEKDGKAEEVWVNFRKGDGPKRTMKSDKRPKDAQNKERASTKRGALK
                     RKKKRELTLTQVLGTAEEPPEEGAVEEDLHKQTGSSPEVCGGEIQHESFDLNVSSDAA
                     YGILKEPLTIIHPLLGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGK
                     PLRVYFFVYGGSTEEQRYLTALCKEKEAFEKLIREKASMVVPEEREGRDETNLDLARG
                     TAAMDTSTDTRKAGGQERNGTQPSIVVDMREFRSELPSLIHRRGIDIEPVTLKVGDYI
                     LTPELCVERKSVSDLIGSLHSGRLYSQCLAMSRYYRRPVLLIEFDPSKPFSLAPRGAF
                     VQEMSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITE
                     DSETLPESDRYNPGPQDFVQKMPGVNAKNCRSLMNQVQNIAELATLSLERLTGILGHS
                     GNAKQLHDFLHTAYADLVSKGRVRK"
ORIGIN      
        1 cgactcggct ctttccgtca acgcgcggcc gcggtcccgg aagggcgccc atggagcggg
       61 gtctgccggg cgaacgccag agtatggcgc ctctgttgga gtacgagagg cagcaggtgc
      121 tggaactgct cgacagcgac gggctggtgg tgtgcgcccg cgggctcggc gccgaccggt
      181 tactctacct tttcctgcgg cttcactgcc accctgcctg cctggtgctg gtgctcaaca
      241 cgcagcctgc cgaggaggag tactttatca atcagttgaa gacagaagga gtcaaacacc
      301 ttaaagtaaa aaatgttaaa tatctcaatt gcatcctcgt gtacagagca cacaggatca
      361 ttgagtcttg ccaggaagcc ttcattctgc gcctcttccg ccagaaaaac aaactcggct
      421 tcatcaaagc tttcaccgac aacgctgttg cctttgacac tggcttttgt cacgtggaaa
      481 gagtgatgag gaaccttttc atgaagaagc tctacctgtg gccaaggttc catgtagcag
      541 tcaactcatt cttggaacaa cacaagcctg aagtcgtaga gattcgcgtg tccatgactc
      601 tggccatgct tgccatccag acagccatac tggacgtctt aaacgcgtgt ctgaaggaac
      661 ttaagtacca caacctgtcg ctagaagtag aagacttgtc gttagaaaat gctctgggga
      721 agccattcga caagacaatc tgccattact tggacccttt gtggcatcag cttggagcca
      781 agactaaatc cttggtgcag gatttgaaga tactaagaac gttactgcag tatctctctc
      841 agtacgactg tgttactttt ctaaatcttc tggaatctct gagagcaaca gagaaggtgt
      901 ttggtcagaa ttcaggttgg cttttcctgg atgctagcac ctccatgttc gtgaatgctc
      961 gtgcccgagt ttaccgtgtc ccagatgtca aactgagcaa aaagaccaaa acatcggaga
     1021 agatggcagg tccagaagag caagaaacaa aaaaagaact ggtcctagaa agcaatccaa
     1081 agtgggaggc gctgactgaa gtcctgaaag aaatcgaaac agaaaataag gagagtgaag
     1141 cccttggtgg cccaggccag gtgctgatct gtgcgagcga tgaccgcaca tgctgccagc
     1201 tcagagacta cctgactgct ggcgcagaag ccttcctact gcggctctac aggaaaacct
     1261 tcgagaagga cggcaaagct gaagaagtat gggtaaattt tagaaaggga gatggcccaa
     1321 agagaactat gaaatctgac aaaagaccca aagatgccca aaacaaagag cgtgcttcca
     1381 ccaaaagggg tgctctcaaa aggaagaaga agcgagagct gactctgacg caagtgttgg
     1441 ggactgctga ggagccgcca gaggaagggg ctgtggagga agacctacac aaacagaccg
     1501 gaagtagccc agaagtctgc gggggagaga ttcagcatga atcatttgat ttaaacgtgt
     1561 catctgatgc agcctatggc atactgaaag agcccctgac catcatccat ccgcttctgg
     1621 gatgcagcga cccctatgcc ctgacacgag tactgcacga ggtggagcct agatacgtgg
     1681 ttctgtatga tgcagagctc acttttgttc ggcagctgga gatctacagg gccagcaggc
     1741 ctgggaaacc tctgagggtt tacttttttg tatatggagg ctccacagaa gagcagcgct
     1801 acctgactgc tctgtgcaaa gaaaaggaag cgttcgaaaa gctcataagg gaaaaagcta
     1861 gcatggttgt ccctgaagaa cgggaaggca gagatgaaac caacctggac ctggcaagag
     1921 gcacagcagc catggacact tccactgaca ctcggaaagc tggtggccag gagcggaacg
     1981 gcacacagcc cagcatcgtg gtggacatgc gtgagtttcg gagcgagctc ccatctctaa
     2041 tccatcggag gggcattgac atagagccag tgactctgaa agtgggtgat tacatcctga
     2101 cacctgagct gtgtgtggag cgcaaaagtg tgagcgacct cattggctcg ctgcacagtg
     2161 gccgcctata cagccagtgc ctagccatgt cccgctacta ccggaggcct gtgctactca
     2221 tcgagtttga cccgagcaag cccttctccc tggcaccacg gggtgccttc gtccaggaga
     2281 tgagcagcag tgatgtgagc tctaagctca cactcctcac cttgcacttc ccacgcctgc
     2341 ggctgctctg gtgcccctcg ccccatgcca cagccgagct gtttgaggag ctgaagcaga
     2401 acaagccaca acctgatgcg gccacagcca tggccatcac cgaagactca gagacgctac
     2461 ctgagtcaga caggtataac cctggccccc aagattttgt gcaaaagatg cctggggtca
     2521 atgccaagaa ctgtcgctcc ctgatgaatc aagtgcagaa catcgcagag ctggccaccc
     2581 tgtccctgga gcgactcacg ggtatcctgg ggcactcggg aaatgccaag cagctgcatg
     2641 acttcctgca cactgcctat gcagacttgg tgtccaaagg cagagtgaga aagtgactgt
     2701 tctcacaggg ctacgtatcg tcatttgcat agcattcatt ctttccccag gcaattaggg
     2761 cctggcattc tgtcccccag ggcatttgtc cagaagccag gatttccccc tgggctctgt
     2821 gctgaggtgt gtgtttaccc cctcttgctg gctcttgccc ctctgtgctc tgtctatgcc
     2881 atgcctgcag tgacccattt tcagtaaggt gtggtgagat catgcccctt gaagcaaaca
     2941 caacccagtt tgcttctcag gctagtggaa gcacgccatc ttggtcctaa cactggctac
     3001 acagggcttg gtaggcctga gacacggcta acgagccgtg ttcctaacga gcttcttcac
     3061 ctcccactca cagagacaaa ctggctcact agtctcctgg tcaccaggta tatgtaacat
     3121 gtactgtgac tcggttgttt aaaccagtgt ttttaacaga attaattgct tatggacaag
     3181 atttgatgag ttaataaagg gctcctcaga attcttggct tctaaatgtt tgatctccaa
     3241 attcctactc tgaacccaaa taacgagtcc aagtgtcccc tagacctcac tgacataaga
     3301 taccagtgcc ataccagaag cacaccatct ctgccctgcc cgtggttgtg tcttgactgc
     3361 ttctccttgc ctgggtaagg actgaatgtg agcaaggggg ttcaggtgct ttctaatgtg
     3421 ggtttctctc cttcttccta aaggattgtg ggtaaatgga taaattggtg cagagaacac
     3481 aaaaattcag aaaaaaaata catagtttgt ttaaagaccc acaaaccaat ctcatgattg
     3541 atttagactg gattttctgt gttaaagtgg gattcatcgg ggttggggat ttatctcagt
     3601 ggtagagcgc ttgcctagca agcgcaaggc cctgggttcg gtccccagct ccgaaaaaaa
     3661 aaaaaaaaaa agaaaaagaa atgggatt
//
