LOCUS       XM_039087014            6110 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ERCC excision repair 4, endonuclease
            catalytic subunit (Ercc4), transcript variant X1, mRNA.
ACCESSION   XM_039087014
VERSION     XM_039087014.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087014.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6110
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6110
                     /gene="Ercc4"
                     /note="ERCC excision repair 4, endonuclease catalytic
                     subunit; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 ESTs, 1 long SRA read, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 171 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:304719"
                     /db_xref="RGD:1560340"
     CDS             72..2825
                     /gene="Ercc4"
                     /codon_start=1
                     /product="DNA repair endonuclease XPF isoform X1"
                     /protein_id="XP_038942942.1"
                     /db_xref="GeneID:304719"
                     /db_xref="RGD:1560340"
                     /translation="MERGLPGERQSMAPLLEYERQQVLELLDSDGLVVCARGLGADRL
                     LYHFLRLHCHPACLVLVLNTQPAEEEYFINQLKIEGVEHLPRRVTNEIASNSRYEVYT
                     QGGIIFATSRILVVDFLTGRIPSDLITGILVYRAHRIIESCQEAFILRLFRQKNKRGF
                     IKAFTDNAVAFDTGFCHVERVMRNLFVKKLYLWPRFHVAVNSFLEQHKPEVVEIHVSM
                     TPAMLAIQTAILDVLNACLKELKYHNPSLEVEDLSLENALGKPFDKTIRHYLDPLWHQ
                     LGAKTKSLVQDLKILRTLLQYLSQYDCVTFLNLLESLRATEKVFGQNSGWLFLDASTS
                     MFVNARARVYRVPDVKLSKKTKTSEKMAGPEEQETKKELVLESNPKWEALTEVLKEIE
                     TENKESEALGGPGQVLICASDDRTCCQLRDYLTAGAEAFLLRLYRKTFEKDGKAEEVW
                     VNFRKGDGPKRTMKSDKRPKDAQNKERASTKRGALKRKKKRELTLTQVLGTAEEPPEE
                     GAVEEDLHKQTGSSPEVCGGEIQHESFDLNVSSDAAYGILKEPLTIIHPLLGCSDPYA
                     LTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPGKPLRVYFFVYGGSTEEQRYLTAL
                     RKEKEAFEKLIREKASMVVPEEREGRDETNLDLARGTAAMDTPTDTRKAGGQERNGTQ
                     PSIVVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLHSG
                     RLYSQCLAMSRYYRRPVLLIEFDPSKPFSLAPRGAFVQEMSSSDVSSKLTLLTLHFPR
                     LRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSETLPESDRYNPGPQDFVLKM
                     PGVNAKNCRSLMNQVQNIAELATLSLERLTGILGHSGNAKQLHDFLHTAYADLVSKGR
                     VRK"
ORIGIN      
        1 gcgttcggcc agcgctcggc tcgactcggc tctttccgtc aacgcgcggc cgcggtcccg
       61 gaagggcgcc catggagcgg ggcctgccgg gcgaacgcca gagtatggcg cctctgttgg
      121 agtacgagag gcagcaggtg ctggaactgc tcgacagcga cgggctggtg gtgtgcgccc
      181 gcgggctcgg cgccgaccgg ctcctctacc atttcctgcg gcttcactgc caccctgcct
      241 gcctggtgct ggtgctcaac acgcagcctg ccgaggagga gtactttatc aatcagttga
      301 agatcgaagg agttgaacac ctccctcgac gggtgacaaa tgaaatcgca agtaacagtc
      361 gctatgaagt ctatacgcag ggcggtatta tatttgcaac aagtcgaata ctcgtggttg
      421 atttcttgac tggcagaata ccttcagatt taataactgg catcctcgtg tacagagcac
      481 acaggatcat tgagtcttgc caggaagcct tcattctgcg cctcttccgc cagaaaaaca
      541 aacgtggctt catcaaagct ttcaccgaca acgctgttgc ctttgacact ggcttttgtc
      601 acgtggaaag agtgatgagg aaccttttcg tgaagaagct ctacctgtgg ccaaggttcc
      661 atgtagcagt caactcattc ttggaacaac acaagcctga agtcgtagag attcacgtgt
      721 ccatgactcc ggccatgctt gccatccaga cagccatact ggacgtctta aacgcgtgtc
      781 tgaaggaact taagtaccac aacccgtcgc tagaagtaga agacttgtcg ttagaaaatg
      841 ctctggggaa gccattcgac aagacaatcc gccattactt ggaccctttg tggcatcagc
      901 ttggagccaa gactaaatcc ttggtgcagg atttgaagat actaagaacg ttactgcagt
      961 atctctctca gtacgactgt gttacttttc taaatcttct ggaatctctg agagcaacag
     1021 agaaggtgtt tggtcagaat tcaggttggc ttttcctgga tgctagcacc tccatgttcg
     1081 tgaatgctcg tgcccgagtt taccgtgtcc cagatgtcaa actgagcaaa aagaccaaaa
     1141 catcggagaa gatggcaggt ccagaagagc aagaaacaaa aaaagaactg gtcctagaaa
     1201 gcaatccaaa gtgggaagcg ctgactgaag tcctgaaaga aatcgaaaca gaaaataagg
     1261 agagtgaagc ccttggtggc ccaggccagg tgctgatctg tgcgagcgat gaccgcacat
     1321 gttgccagct cagagactac ctgactgctg gcgcagaagc cttcctactg cggctctaca
     1381 ggaaaacctt cgagaaggac ggcaaagctg aagaagtatg ggtaaatttt agaaagggag
     1441 atggcccaaa gagaactatg aaatctgaca aaagacccaa agatgcccaa aacaaagagc
     1501 gtgcttccac caaaaggggt gctctcaaaa ggaagaagaa gcgagagctg actctgacgc
     1561 aagtgttggg gactgctgag gagccgccag aggaaggggc tgtggaggaa gacctgcaca
     1621 aacagaccgg aagtagccca gaagtctgcg ggggagagat tcagcatgaa tcatttgatt
     1681 taaacgtgtc atctgatgca gcctatggca tactgaaaga gcccctgacc atcatccatc
     1741 cgcttctggg atgcagcgac ccctatgccc tgacacgagt actgcacgag gtggagccta
     1801 gatacgtggt tctgtatgat gcagagctca cttttgttcg gcagctggag atctacaggg
     1861 ccagcaggcc tgggaaacct ctgagggttt acttttttgt atatggaggc tccacagaag
     1921 agcagcgcta cctgactgct ctgcgcaaag aaaaggaagc gtttgaaaag ctcataaggg
     1981 aaaaagctag catggttgtc cctgaagaac gggaaggcag agatgaaacc aacctggacc
     2041 tggcaagagg cacagcagcc atggacactc ccactgacac tcggaaagct ggtggccagg
     2101 agcggaacgg cacacagccc agcatcgtgg tggacatgcg tgagtttcgg agcgagctcc
     2161 catctctaat ccatcggagg ggcattgaca tagagccagt gactctggaa gtgggtgatt
     2221 acatcctgac acctgagctt tgtgtggagc gcaaaagtgt gagcgacctc attggctcgc
     2281 tgcatagtgg ccgcctatac agccagtgcc tagccatgtc ccgctactac cggaggcctg
     2341 tgctactcat cgagtttgac ccgagcaagc ccttctccct ggcaccacgg ggtgccttcg
     2401 tccaggagat gagcagcagt gatgtgagct ctaagctcac actcctcacc ttgcacttcc
     2461 cacgcctgcg gctgctctgg tgcccctcgc cccatgccac agccgagctg tttgaggagc
     2521 tgaagcagaa caagccacaa cctgatgcgg ccacagccat ggccatcacc gcagactcag
     2581 agacgctacc tgagtcagac aggtataacc ctggccccca agattttgtg ctaaagatgc
     2641 ctggggtcaa tgccaagaac tgtcgctccc tgatgaatca agtgcagaac atcgcagagc
     2701 tggccaccct gtccctggag cgactcacgg gtatcctggg gcactcggga aatgccaagc
     2761 agctgcatga cttcctgcac actgcctatg cagacttggt gtccaaaggc agagtgagaa
     2821 agtgactgtt ctcacagggc tacgtatcgt catttgcata gcattcattc tttccccagg
     2881 caattagggc ctggcattct gtcccccagg gcatttgtcc agaagccagg atttccccct
     2941 gggctctgtg ctgaggtgtg tgtttgcccc ctcttgctgg ctcttgcccc tctgtgctct
     3001 gtctatgcca tgcctgcagt gacccatttt cagtaaggtg tggtgagatc atgccccttg
     3061 aagcaaacac aacccagttt gcttctcagg ctagtggaag cacgccatct tggtcctaac
     3121 actggctaca cagggcttgg taggcctgag acacggctgc tgttcctaac gagcttcttc
     3181 acctcccact cacagagaca aactggctca ctagtctcct ggtcaccagg tatatgtaac
     3241 atgtactgtg actcggttgt ttaaaccagt gtttttaaca gaattaattg cttatggaca
     3301 agatttgatg agttaataaa gggctcctca gaattcttgg tttctaaatg tttgatctcc
     3361 aaattcctac tctgaaccca aataacgagt ccaagtgtcc cctagacctc actgacataa
     3421 gataccagtg ccataccaga agcacaccat ctctgccctg cccgtggttg tgtcttgact
     3481 gcttctcctt gcctgggtaa ggactgaatg tgagcaaggg ggttcaggtg ctttctaatg
     3541 tgggtttctc tccttcttcc taaaggattg tgggtaaatg gataaattgg tgcagagaac
     3601 acaaaaattc agaaaaaaaa ttacatagtt tgtttaaaga cccacaaacc aatctcatga
     3661 ttgatttaga ctggattttc tgtgttaaag tgggattcat cggggttggg gatttatctc
     3721 agtggtagag cgcttgccta gcaagcgcaa ggccctgggt tcggtcccca gctccgaaaa
     3781 aaaaaaaaag aaaagaaaaa aaaaatggga ttcatcacat cttcatgttg ttgtaaactg
     3841 cgatacttaa gcattagctg cttatgtgtt cagtgacagg cagtgagctt tctacctcaa
     3901 gagctaatac catataatgt cagccttgcc acatggttga gtgttccatc gctgtcagcc
     3961 atctttgcct gaactgagga aacagtggac cttgtaacaa aactactatc tcctcccact
     4021 ttagcaaaat actctggaca gaaccttatt tgttggcatc ttgattattg ggacattcct
     4081 tccaggaccc tctcatggta cagtgtgtgg aaaccgctgt ggaggcttca gtggtgtttg
     4141 cttagagcct ctgcctcccc tgtggacttc agaccctctc taggtggctc acagcaggac
     4201 atgtagtgtg taaggaccgg ttccacatgt tcctcaatga caggaaaaga gcccgcgtga
     4261 tgtggttgtt cctatattcc cagtccttgg ttagttaaac ccaatgatgc agagcccttc
     4321 aggaatggat gtcaaggggt gtggagacgt agttgattac tggaggtgtg gaaagtggaa
     4381 aaggtcaagc agtaagctta tggtggaaag gggtctgcgt tcaatcaggg ttaaaggtgc
     4441 cttctggacc tgacagaaat gcctggtgag ttgcactgga ctgcgtggtc gttcccagct
     4501 catgaccacg gacgtgccac ttccacttat ggtagcagtc tccttcctcc atgtaactcc
     4561 gccccccttg tcgttttgtt ccataaaaca aaaatcttag catagctctt gctttgatgg
     4621 gtgtttcatt caaagttaaa atgtcaaagc tcttctggac agcattttaa acaatccttg
     4681 taacctagtg cagctagcag tctttaaccc actggcttcc aatgtctgtc agatcaagtc
     4741 agctgtttgc tgcgaccccc attactgggg acttctgttg cctcactcct cctctgctga
     4801 cttcacttct gctgctcatt gctggggtgg aaggcttccg gcacatccat ccgttgttta
     4861 gttttctcag actttttttc acacattttt agaatctgtt tcccagcagc attttgctac
     4921 ctttgatgtt gttcgacatc ataaatactg atgagcccct gggtagcttt taaaagacat
     4981 ttaaaaggtc agcattgtgt ttaccagctg tttacataga gccttgatta caagacatta
     5041 tccttgaatt tactttctta ctgttcttaa aactatatga ggttatatcc tactcgatag
     5101 tggccatcaa ggcaagcctg gtggccctca gccctaacta atcccagctc tggggagaca
     5161 gaggtaggca gatctctgtg actttaaggc tagcctgctc tatacagtga gtagagtata
     5221 gctatatagt aagacctgtc ccaaaaccaa acaaatgtgg tggccatcag cactgtcccc
     5281 agtggtcctg acttcctttg gtgaaagctc actagactgt agccctgcag ctcacagggg
     5341 acaggaaatg ctctcttcca gcccccggca ggccaggaac tcgaggtccg gttgtagaga
     5401 ttcagggact tcgtgaggag ggaggctctg ttctagagtt ccctttgctt ctccagtgga
     5461 tttgatgtca cgctaccatg gaaaacctgt tgagggaaat tctccattag tttactttga
     5521 ctttaaaatg tcctctcaaa agaatttaag aaaaaaaaaa gacagtgtgt ccaggctttg
     5581 acaagaactg tcatgtttct tggttgtttt gctctcattt tgatgctatt tcctgtctga
     5641 tcctgagctg tgggacacag ttgtccacct ttttcagcag gcacttggta gtctgcacca
     5701 ttgcgctgtt ggagggctgt ttccgtttga atgctgtttt catttatggt tccgtaagcc
     5761 aagatttgat aaaactggag tatatttact cgaaatgggg gtgggggtaa ttatttagca
     5821 tctccctcgg cttcctaggc aaagtgaaag tggcagtgca cagtaagaga gtacatgctg
     5881 ccagcaacac gtgtgcccta cacagtgaag gcgttcatta tgcacagtag atagatggct
     5941 aatgcaagtt cactctgagt catcgcttct gcctggctct cagtaaccca tgctctgtgt
     6001 catcaatgtc cttggttgtc cccttcttga catgctgtga cgtcttctta ccaaagaagc
     6061 tggggaagaa aagctgttgt cctttggaaa taacagttgg ttgaaaatgg
//
