LOCUS       XM_039103490            7206 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus erbb2 interacting protein (Erbin),
            transcript variant X1, mRNA.
ACCESSION   XM_039103490
VERSION     XM_039103490.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103490.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7206
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7206
                     /gene="Erbin"
                     /note="erbb2 interacting protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 124 ESTs, 4 long SRA reads, 20 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 158 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:365661"
                     /db_xref="RGD:1562952"
     CDS             927..5282
                     /gene="Erbin"
                     /codon_start=1
                     /product="erbin isoform X1"
                     /protein_id="XP_038959418.1"
                     /db_xref="GeneID:365661"
                     /db_xref="RGD:1562952"
                     /translation="MTTKRSLFVRLVPCRCLRGEEETVTTLDYSHCSLEQVPKEIFTF
                     EKTLEELYLDANQIEELPKQLFNCQSLHKLSLPDNDLTTLPASIANLINLRELDVSKN
                     GIQEFPENIKNCKVLTVVEASVNPISKLPDGFSQLLNLTQLYLNDAFLEFLPANFGRL
                     TKLQILELRENQLKMLPKTMNRLTQLERLDLGSNEFTEVPEVLEQLSGLREFWMDGNR
                     LTFIPGFIGSLRQLTYLDVSKNNIEMVEEGISTCENLQDFLLSSNSLQQLPETIGSLK
                     NVTTLKIDENQLMYLPDSIGGLRSIEELDCSFNEIEALPSSIGQLTNIRTFAADHNYL
                     QQLPPEIGNWKNVTVLFLHSNKLETLPEEMGDMQKLKVINLSDNRLKNLPFSFTKLQQ
                     LTAMWLSDNQSKPLIPLQKETDSETQKMVLTNYMFPQQPRTEDVMFISDNESFNPALW
                     EEQRKQRAQVAFECDEDKDEREAPPREGNLKRYPTPYPDELKNMVKTVQTIVHRLKDE
                     ETNEESGRDLKQHEDQQVVNKDKGVKPSESITTKSKLDEREKYMNSVPKTSEPEAETN
                     AGNSPVTTNRKSSGNMKHLVNHDDVFEESEELSSDEEMKMAEMRPPLIETSINQPKVV
                     ALSNNKKDDAKDTDSLSDEVTHNSNQNNSNCSSPSRMSDSVSLNTDSSQDTALCSPAK
                     QIPIDSNSKIRQEDENFNSLLQNGVNLNNSPEEKFKINDKKDFKLPEYDLNIEEQLVL
                     IEKDVDSKATSEDSHQLDHINMNLNKLVTNNIFQPEIMERSKMQDIVLGTGFLSIHSK
                     SEAEHIENGNKFLNSESINKVNGLSEDTAQSPGRIEPQNTSPADVGISKSTEDLSPQR
                     SGPAGSVVKSHSITNMETGGLKIYDILSDDGPQPPGATVKVASTMDGKNIVRSKSATL
                     LYDQPLQVFTASSSSSELLSGTKAVFKFDSNHNPEDPDIIRASIVPGPQSIPQLYGPP
                     QYNVQYSGSAAMKDTLWHPKQNPQIDPVSFPPQRLPRSESAENHSYTKHSANMNFSNH
                     NNVRANTAYHLHQRLAPTRHGEMWAVSPNDRLVPAVSRTTVQRQSSVSSTASVNLGDP
                     GPTRRTEGDYLSYRELHSMGRTPVTSGSQRPLSARAFSIDGPSTSRPQSARPSISEIP
                     ERTMSVSDFNYSRTSPSKRPNARVGSEHSLLDPPGKSKVPHDWREQVLRHIEAKKLEK
                     SMLSRSFSSNLTAVSSSHYGSSRDLHGSQGSLALNVADGRGSGGHSFRHPQTSSPGDC
                     CQDDRFMSGEQNHPLGALSHRDLRDSLMKMPLSNGQMGQPLRPQANYSQTHHPPQASV
                     ARHPSREQLIDYLMLKVAHQPPYTHPHCSPRQGHELAKQEIRVRVEKDPELGFSISGG
                     VGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKT
                     FHNAVELIIVREVSS"
ORIGIN      
        1 cgctgttgcc gccgcggcct gtgaggcaga aactccctcc accccggtcc ggcccgggtc
       61 cgcctcctcc tttctctcct ccgcctcgcc tcccctctcc gtctcccgct cgagtgaagg
      121 tggcgcggcg gcgcgcgacg cagcctcggc ccctggcgcg ggcccgcgag ctcctgagga
      181 gaccgcgcca ccgcggctgc ggggaaggag aaccggggag agcgcaggga ctgcggcggg
      241 gagactggag ggttagagcg ggagtggcag agaccgggcc ggccggtcgg actgcccgac
      301 cgacggtcgc cttccagcct gcgcggccgg tcggctccgg ctcggggcgg cgggggccgg
      361 acgggcgcag ggtgcggccg gcgcactcga gacaataccc gcgcggcgcg gctgtggggg
      421 cggaggccta gtgcggccca ggccagcgga gctccgcgtc ctcgcccccg tgggccgcgc
      481 aaggtcccgc ggctcggggc gggcgccgtc ccctccccct cggcggcgcg ccgccccggg
      541 gttccgggtt cccgggcacc gagctggatc ctgcttttca cccaggcagg aagtgagttt
      601 cgcacggcaa ttccgggcgg tgtcacgagt gaaaagtttt ttccttcggc ggagaaccta
      661 gacgaggctg ggaaactcct gacagaagtc gcaagcagga agccagcccg caccccagcc
      721 cccaccgaag cagccgcgct gctgcgggcg gcagctccac atccgcctag tcctcgcggg
      781 agcctcggcg gggcccggag ccactgagga agggcaggaa accatgtcaa gccgagcctc
      841 gggacggctg ccctgagaca cccggagaga atgttggctc aattaagaaa catcagggag
      901 attaattcaa ctcagtgcat ttaacaatga ctacaaaacg aagtttgttt gtgcggttgg
      961 taccatgtcg ctgtctacga ggggaagagg agacagtcac tactctagat tattctcatt
     1021 gcagcttgga acaagttccc aaagagattt tcacctttga aaaaacttta gaggagctct
     1081 atttagatgc taatcagatt gaagagcttc caaagcaact ttttaattgt cagtctctac
     1141 ataaactaag tttgccagac aatgatttaa caacattacc agcttccatt gcaaatctga
     1201 ttaatctcag ggaactggat gtcagcaaaa atggaataca agaatttcca gaaaatatta
     1261 aaaattgtaa agttttgaca gttgtggagg ccagtgtaaa ccctatttct aagctccctg
     1321 atgggttttc tcagctgcta aacctaaccc agttatatct gaatgatgct ttccttgaat
     1381 tcttaccagc taattttggc agattaacta aactccagat actagaactt agagaaaatc
     1441 agttgaaaat gttgcctaaa accatgaata gactgaccca gctggaaaga ctggatttgg
     1501 gaagtaatga attcacagaa gtgcctgaag tacttgaaca actgagtgga ttgagagagt
     1561 tttggatgga tggcaataga ctgactttta ttccagggtt tattggtagt ttgagacagc
     1621 tcacatactt ggatgtttct aaaaataata ttgaaatggt tgaagaagga atttcaacat
     1681 gcgaaaatct ccaggacttc ctcttatcaa gtaattccct tcagcagctg cctgagacta
     1741 tcggttcatt gaaaaatgtc acaactctta aaatagatga aaatcaatta atgtatctac
     1801 cagactcaat aggagggtta aggtcaatag aagaactgga ttgcagtttc aatgaaattg
     1861 aggctttgcc ttcctctatc ggacagctca caaacataag aacatttgct gcagatcaca
     1921 attacttaca acagctaccc ccagagattg gaaactggaa aaatgtaact gtgctgtttc
     1981 tccattctaa taaactagag acgcttccag aggaaatggg tgatatgcag aaattaaaag
     2041 ttatcaattt aagtgataat aggttaaaga atttgccttt tagctttaca aagctacaac
     2101 agttgactgc tatgtggctg tcagataatc agtccaaacc tctgatacct cttcaaaaag
     2161 aaactgattc agaaactcag aaaatggtgc ttactaatta catgttccct cagcaaccaa
     2221 ggactgaaga tgttatgttc atatcagata atgaaagttt taaccctgca ttgtgggaag
     2281 aacagagaaa acagcgggct caagtagcat ttgaatgtga tgaagacaaa gatgaaaggg
     2341 aggcacctcc cagggaggga aacttaaaga gatatccaac accgtaccca gatgagctta
     2401 agaatatggt caagactgta caaaccattg tacacagatt aaaggatgaa gaaactaatg
     2461 aggagtccgg gagagattta aaacaacatg aagatcagca ggttgtaaat aaggacaagg
     2521 gtgtgaagcc ttcagaaagt attacaacaa aaagcaagct tgatgagaga gaaaagtata
     2581 tgaactctgt accgaaaacg agtgagcctg aagccgagac caatgcgggg aattcaccag
     2641 tgactacaaa taggaaatcg tctgggaaca tgaagcatct tgtcaaccat gatgacgttt
     2701 ttgaggaatc tgaagaactt tcttctgatg aagaaatgaa aatggcagag atgcgacctc
     2761 cattaattga aacctcgatt aatcagccca aagtcgtagc acttagtaat aataaaaaag
     2821 atgatgcaaa ggatacagat tctttatcag atgaagtcac acacaatagt aatcaaaata
     2881 acagcaattg ttcttcccca tctcggatgt ctgattcagt gtctcttaat actgacagca
     2941 gtcaagacac cgcactctgt tctccagcga aacaaattcc tatcgatagt aactccaaaa
     3001 tcagacaaga agatgaaaat tttaacagcc ttttgcaaaa tggagttaat ttaaacaatt
     3061 caccagagga aaaattcaaa attaatgata aaaaggattt taagttacct gagtatgatt
     3121 tgaatattga agagcaatta gttctgattg aaaaagatgt tgattcaaaa gccacatctg
     3181 aggattctca ccaattagac catattaaca tgaatcttaa taaactggtg accaataata
     3241 tttttcaacc agaaataatg gaaagatcaa agatgcagga tatagtgctt ggaacaggct
     3301 ttttaagtat tcattctaaa agtgaagctg agcatattga aaatggaaat aaatttctaa
     3361 attcggagtc cataaataag gtaaatggtc tttctgagga tactgcacag tctcctggta
     3421 ggattgaacc acagaatacc agtcctgctg atgtgggtat ttctaaaagc acggaagatc
     3481 tatctcctca gagaagcggt ccagctggat ctgttgtgaa atctcatagt ataactaaca
     3541 tggagactgg aggcctaaaa atctatgaca ttcttagtga cgatggtcct cagccaccag
     3601 gtgcaacagt gaaagtcgct tctactatgg atgggaaaaa catagtcagg agcaagtcgg
     3661 ccacactgct gtatgatcag cccctgcagg tgttcaccgc ctcttcctca tcttctgagt
     3721 tactgtcagg tacaaaggca gttttcaagt ttgattcaaa tcacaaccct gaagacccag
     3781 atataataag ggcttccata gtacctggcc cacagtctat acctcaactg tatggtcctc
     3841 cacaatataa tgtccaatac agtggcagtg ctgcaatgaa agacactctg tggcacccta
     3901 aacaaaatcc acagatagat cctgtcagtt ttcctcctca gcgccttcca agatctgaga
     3961 gtgcagaaaa tcacagttac acaaagcatt ctgccaatat gaatttctct aaccataaca
     4021 atgttagagc caatactgca taccatttac atcagcgact tgccccaacc agacatggag
     4081 aaatgtgggc tgtctctccg aatgaccggc tagtgccagc agtatctcgg actactgttc
     4141 agcgacagag tagtgtgtct tcaacagcgt ctgtaaatct tggtgatcct ggtcccacga
     4201 ggcgtactga aggggattat ttatcataca gagagttaca ttcaatggga agaactccag
     4261 tcacgtcagg atcacaaaga cctctttccg cacgagcatt cagcattgat ggcccaagta
     4321 catcaaggcc tcagagtgcc cggccctcta taagtgaaat accagagaga actatgtcag
     4381 tcagtgattt caattactca cggactagtc cttccaaaag acccaatgca agggttggtt
     4441 ctgagcattc tttattagat cctccaggga aaagtaaagt tcctcatgac tggcgggaac
     4501 aagtacttcg acacattgag gccaaaaagt tagaaaagag catgctgtca aggtccttta
     4561 gttccaatct cactgctgta agcagctctc actatggcag ctctagggat ctgcatggca
     4621 gccagggcag ccttgccctg aatgttgcag acggaagagg ttctggtggg cacagttttc
     4681 gacatcccca gacatccagt ccaggagatt gttgccaaga tgatagattc atgtcaggag
     4741 agcagaacca cccactgggt gcacttagtc acagagatct tcgagacagc ctgatgaaaa
     4801 tgcctttgag taatggacaa atgggccagc ctctcaggcc tcaggcaaat tatagtcaaa
     4861 cacatcatcc ccctcaggca tctgtggcaa ggcatccctc tagagaacaa ctaattgatt
     4921 atttgatgct gaaagtggcc caccagcctc catatacaca tccccattgt tctcctagac
     4981 aaggccatga actggcaaag caagagattc gagtaagagt agaaaaggat ccagaacttg
     5041 gatttagcat atcaggaggt gtcgggggta gaggaaaccc tttcagacct gatgatgatg
     5101 gtatatttgt aacaagggta cagcccgaag gaccagcatc aaaattacta cagccaggag
     5161 ataaaattat tcaggctaat ggctacagtt ttatcaacat tgaacatgga caagcagtgt
     5221 ccttgttaaa aactttccat aatgcagtag aactcatcat tgtacgagaa gtttcttcat
     5281 aagcagtata gacaaaaaaa aaaaaaaaat ggggacgata gcaagattat tgaagacaca
     5341 agggaaatga ctattttgct tatttttata tataaagaag aacaaaaact gttggcttgg
     5401 aacttgtaca ttactgaaat aatggagctt gtgcttagag ggaagaacca ctcactgtac
     5461 agaagatgaa agagactctt ggattcaaat catttaagat ttgttgttag gtttttaaac
     5521 ttagcaaatc aaggctacaa aaacaaagtt ctgttgtttt tgtatagatt gtaggtttat
     5581 ttttggattt catacacatg actgactgta tgcaaggcaa tagttagcct tgattgtagc
     5641 ccagagacag attgcagtgc tctctgtctc ctagcttttg tgtcctaact tttatccaac
     5701 tggtattaat ggtttttctg ccgaactact ttttccttgt ggtaagagat ttgaagtgtt
     5761 ggcttttgct atgtgcatac tgaagagtga gtacatgaag ttggtgctgg tgggttcact
     5821 tttcaaggcc agattaaagc attatttcct ataaaaatct gaggcaaatg gtgaaaaaaa
     5881 gttatctgat aatgtatttt tattaataga ataatgcaat aaaatacgta atgtcttttt
     5941 aaaagacaat aattgcattt tatgagctct acaagatcga ttcttgtcat agctattgac
     6001 tatacatttg ctactggtga ttcaattttt aattttttag ttactgaagt ttttaactat
     6061 gtagatgcat gtccacgcat ttctcatact atgaagttct gatacttttt tctttgataa
     6121 atggtggtac ttgcaacctc atttttataa ttagcactcc atcataacct aatttataat
     6181 ttttgttata ataagcaaat gaaactaaaa agccagtttt aagttttgtg tctcacccat
     6241 aatataaaat atcagaaggt ttcagaaagc ctcttggttt tgttggcctg gcgttgcctt
     6301 ggtaaagtga gaggaaacgt gagtgtgcat ggagctagga aaccaaagca agtcggtgag
     6361 actgacacag cgatagagaa ttgccgcgga gagcagacgg atggtcccgg aagcctgcca
     6421 gtgtgtaaag tgtcaagatt aagggctgtt cttacagaga gcattcaatg tgaactccac
     6481 acttcagagt ctttaaaggg tttctaaatg taccgatgtg atagtgtttt accaccaatt
     6541 gcctttgttc ctagttactg taacaagtat tgatagaagt ttattaattt tgtttatcca
     6601 aaccattaat tttatttgct tttgttcaat ataatcaaat aaaatttggg taacatgcag
     6661 tggtaagaag taatgcacgg ttatttggac cagagacaag tgccatagga gaccagcaac
     6721 cgtttttagt agaagctagt ctgaaaactc ttattaaagc aatactcagt tctttaatcc
     6781 attttttttt aatttcagag aagcataatt tgggtatttc taatgtgtta tgctcttttc
     6841 ttcaaccttg attggttgtt cttacaggac tagctaaagc accacctaca ttatttttac
     6901 aaatgagtcg gactcatttc catttctagt caaaatagtc agcactttta aaaatatttg
     6961 aacttcaata ttgcacttct ttcaagctgt tatcaattgg gtattgtact gtatagtttt
     7021 aataattttg attgaaaccc tttaacaact ctttgtaaat tttaactcat ttttagttga
     7081 ttttcagtac ttttacatag gaattgattt ttatgaatat agtagaagaa atgtgctgta
     7141 ttttgataaa attcacttgt atgtgttgta atctcttaaa caaagaatga caaacagctt
     7201 ctttaa
//
