LOCUS       XM_003751157            4426 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EPH receptor B4 (Ephb4), transcript
            variant X1, mRNA.
ACCESSION   XM_003751157
VERSION     XM_003751157.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003751157.6.
            
            On Jan 21, 2021 this sequence version replaced XM_003751157.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4426
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4426
                     /gene="Ephb4"
                     /note="EPH receptor B4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 29 ESTs, 3 long SRA
                     reads, 18 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 60 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:686310"
                     /db_xref="RGD:1583193"
     CDS             530..3520
                     /gene="Ephb4"
                     /codon_start=1
                     /product="ephrin type-B receptor 4 isoform X1"
                     /protein_id="XP_003751205.1"
                     /db_xref="GeneID:686310"
                     /db_xref="RGD:1583193"
                     /translation="MELRALLCWASLATALEETLLNTKLETADLKWVTYPQAEGQWEE
                     LSGLDEEQHSVRTYEVCDMKRPGGQAHWLRTGWVPRRGAVHVYATIRFTMMECLSLPR
                     ASRSCKETFTVFYYESEADTATAHTPAWMENPYIKVDTVAAEHLTRKRPGAEATGKVN
                     IKTLRLGPLSKAGFYLAFQDQGACMALLSLHLFYKKCSRLVTNLTYFPETVPRELVVP
                     VAGSCVANAVPTASPSPSLYCREDGQWAEQQVTGCSCAPGYEAAEGNKVCRACGQGTF
                     KPQIGEEPCLPCPANSHSNNIGSPVCLCRIGYYRARSDPRSSPCTTPPSAPRSVVHHL
                     NGSSLRLEWSAPLESGGREDLTYAVRCRECRPGGSCLPCGGDLTFDPGPRDLVEPWVA
                     IRGLRPDVTYTFEVAALNGVSTLATGPPPFEPVNVTTDREGRTGFLSPAVPPAVSDIR
                     VTRSSPSSLILSWAIPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKQ
                     GASYLVQVRARSEAGYGPFGQEHHSQTQLDESESWREQLALIAGTAVVGVVLVLVVII
                     IAVLCLRKQSSGREVEYSDKHGQYLIGHGTKVYIDPFTYEDPNEAVREFAKEIDVSYV
                     KIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEH
                     PNIIRLEGVVTNSVPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYL
                     AEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGGKIPIRWTAP
                     EAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVINAIEQDYRLPPPPDCPT
                     SLHQLMLDCWQKDRNARPRFPQVVSALDKMIRNPASLKIVARENGGASHPLLDQRQPH
                     YSAFGSVGEWLRAIKMGRYEESFAAAGFGSFEVVSQISAEDLLRIGVTLAGHQKKILA
                     SVQHMKSQAKPGAPGGTGGPTQQF"
ORIGIN      
        1 cctatgcgcc cctccctcct aggccaggcg ccgcccgact cagtctcaac tcggcccagc
       61 tctggcccag cctgtctccc tcgctctgtt cggtccccac tttggcttct acccgctttg
      121 accgcaaccg gcgcactcag cttggcggcg cgagagccac ctaccactcc agggagcgag
      181 caagatcgcg agcaatcggc ctaccccagc cagccagggc gggacctccg aagccccgaa
      241 gggaccccta actctcagcc acgtcccgat ctccgcccgc ccagcgacgg ccactgccag
      301 gacgtccccc cttaaggctg gcctccccgc gcgcgcgcgc tgcggcgggg acgtgggggc
      361 cgcacctgag cgcgggtgcc cggcgcgccc gcatgggcca tcgctgagag gcccccgacg
      421 gaaagtccca gctgcagagt cggtgtgcac ccgcccaggg gagggtcaga cctggggggg
      481 ccagggcccc ccaaactcgg atcgtattca gccaaagtga ggcggcgcca tggagctcag
      541 agcgctgctg tgctgggctt ccctcgccac tgctttagaa gagaccctgc tgaacacaaa
      601 actggagacg gcagatctga aatgggtgac ttaccctcag gcagaaggcc agtgggagga
      661 gctaagcggc ctggatgagg aacagcacag cgtgcgcacc tatgaggtgt gcgatatgaa
      721 gcgtccaggg ggccaggcac actggctgcg cactggctgg gtcccacggc gaggtgctgt
      781 ccacgtgtat gccacgatac gcttcaccat gatggaatgt ctgtccctgc cgagggccag
      841 tcgctcctgc aaggagacat tcaccgtctt ctattatgag agcgaagccg atactgccac
      901 ggcccacacg ccagcctgga tggagaaccc ctacatcaag gtggacacag tggctgcgga
      961 acatctgact cggaagcgcc ctggagctga agcaacaggg aaagttaaca tcaagacgct
     1021 gcgcctgggt cctctcagca aagccggctt ctacctggct ttccaggacc aaggagcctg
     1081 catggccctg ctctccttgc atctctttta caagaagtgc tcccggctgg tcacgaactt
     1141 gacctacttc cccgagacgg tgcctcggga gctcgtggtg ccagtggcag gtagctgcgt
     1201 ggccaatgcc gtccctacgg ccagccccag ccccagcctc tactgccggg aagatggtca
     1261 gtgggctgag cagcaggtca cgggctgcag ctgcgcgcca gggtacgagg ccgcggaagg
     1321 gaacaaagtg tgcagagcct gtggccaggg gaccttcaag ccccaaatag gagaagagcc
     1381 ctgcctgcca tgcccagcca acagccactc taataacatt gggtctcctg tctgcctgtg
     1441 tcggattggg tattaccggg cccgctcgga tccccgcagt tcgccttgta ccaccccacc
     1501 ctctgctcca agaagcgtag ttcaccatct gaatggctcc tccctgcgcc tggagtggag
     1561 tgcccccctt gagtctggag gccgagagga cctcacttat gctgtacgct gccgagaatg
     1621 ccgtcctggg ggttcctgct tgccctgtgg gggcgacctg actttcgacc ctggtcctcg
     1681 agacctggtt gagccctggg tggcaatccg agggctgcgt cctgatgtca cctatacctt
     1741 tgaggttgct gctttgaatg gtgtgtctac cttagccacc ggaccacctc cttttgagcc
     1801 tgtcaatgtc accactgacc gtgaagggcg cactgggttt ctctctcctg cagtgcctcc
     1861 cgcggtgtct gacatccgag tcactcggtc ctcacccagc agcttgatcc tgtcatgggc
     1921 tatccccaga gcacccagtg gggccgtgct ggactacgag gtcaagtatc acgagaaggg
     1981 cgcagagggc cctagcagtg tacgtttcct gaagacatca gaaaaccgag ctgagctccg
     2041 ggggctgaag cagggagcca gctacctggt ccaggtccgt gcacggtccg aggccggcta
     2101 tggtcccttt ggccaagagc atcacagtca gactcaactg gatgagagcg agagttggcg
     2161 ggaacagctg gccctgatcg caggcaccgc ggttgtaggc gtggtcctgg tcctggtggt
     2221 cattattatc gcagttcttt gcctcaggaa gcagagcagt gggagggaag tcgagtactc
     2281 cgataaacat gggcaatatc tcatcgggca cggtaccaag gtctacattg atccctttac
     2341 ttacgaagac cctaatgagg cagtgaggga atttgccaaa gagattgatg tctcctatgt
     2401 caagattgaa gaggtaattg gtgcaggtga gttcggtgag gtgtgccggg gtcggctgaa
     2461 ggcaccaggg aaaaaggaga gctgtgtggc catcaagacc ttgaagggtg gctacacgga
     2521 gcgccagaga cgtgagttcc tgagcgaggc ctccatcatg ggtcagttcg agcatcccaa
     2581 catcatccgc ctcgagggtg tggtcactaa cagcgtgccc gtcatgatcc tcacagaatt
     2641 catggagaat ggagccctag actctttcct gcggctgaac gacgggcagt tcacagtcat
     2701 tcagctggtg ggcatgctga gaggcattgc ctcaggcatg cggtacctgg ccgaaatgag
     2761 ctatgtccat cgagacctgg ccgctcggaa catcctggtc aacagtaacc tggtctgcaa
     2821 ggtgtccgac tttggcctct ccagattcct ggaggagaac tcctctgatc ccacctacac
     2881 aagttccctg ggaggaaaga ttcccatccg atggaccgcc cctgaggcca ttgccttcag
     2941 gaaattcacg tctgccagtg atgcctggag ctatgggatc gtcatgtggg aggtcatgtc
     3001 tttcggggaa cggccatact gggacatgag caaccaggac gtgatcaatg ctattgaaca
     3061 ggactaccgg ctgccccctc ccccagattg ccccacctcc ctccaccagc tcatgctgga
     3121 ctgttggcag aaggaccgga atgcccggcc ccgattcccc caggtggtca gcgctctgga
     3181 caagatgatc cggaatcccg ctagcctcaa aatcgtggcc agggagaatg gcggggcctc
     3241 acatccactc ctggaccaac ggcagcctca ctactctgct tttggttctg tgggcgagtg
     3301 gcttcgagcc atcaagatgg gaagatacga ggaaagtttt gcagcggctg gattcggctc
     3361 ctttgaggtg gtcagccaga tctctgccga ggaccttctc cgaattggag tcactctggc
     3421 aggacaccag aagaaaatct tagccagtgt gcagcatatg aagtcccaag ctaagccagg
     3481 agcccccggt gggacaggag gaccaaccca gcagttctga cctccaaggg ctcaccaccc
     3541 cagagctgag gggggcagag ttgggtgggg actcacaaga tgagcccctc cccctcatca
     3601 cagcttccca ttggattgca ctttgaacag aaggggtagg agctgttaat cctggagacc
     3661 cagccttgag gaaactgtgc catatgggat gggaagaatc acacgggtgc cctccaggcg
     3721 ggaaacccca aactcaacag tgagtctttc cttcaagact gggcaaagaa catccctacg
     3781 tctctaatct cccatcttcc cagagggctc tctcctcaag cgtcttccac ctcaacgggc
     3841 atgtccctgc agaccaaaga gaaaaggtga ccagcctgcc aacttgggag tggaaaatgc
     3901 cgtcccagaa ggcaggacgg ggctgtcagg actcggtgat gtaatcattg gattctgatg
     3961 tcccaacttg ctgtcaccac caaaggcaat cattttccct tgtaaatgct ccttccctca
     4021 tctgccttca tattgaaggt tctggagttt tactattttt tattttgtta ttttttttcc
     4081 tccttctctt ccctccccac cccccttgtc cagattttgt gcgttgaagg gtacctggtt
     4141 cgactatctc ctgttgggaa caaggacccg ttgatatgtt ctagaacagt gcctttgaaa
     4201 tgccatagcc tcagacagtt agttccttcc tccttccctc cccctaagtg cccccaagct
     4261 gtgttgtgag tggagggaag ggggggtgat gttgtaaaag gggcaggagg gtggtggcgg
     4321 tcaacaggag gcagacaccg gtgcttggaa gggggttctt aaattatatt taaaaagaaa
     4381 cttttttttt ttgtataaat aaaagaaaac gggatctgtc tcagta
//
