LOCUS       XM_003751156            4396 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EPH receptor B4 (Ephb4), transcript
            variant X2, mRNA.
ACCESSION   XM_003751156
VERSION     XM_003751156.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 31, 2024 this sequence was replaced by
            NM_001427586.1.
            
            On Jan 21, 2021 this sequence version replaced XM_003751156.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4396
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4396
                     /gene="Ephb4"
                     /note="EPH receptor B4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 30 ESTs, 3 long SRA
                     reads, 22 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 108
                     samples with support for all annotated introns"
                     /db_xref="GeneID:686310"
                     /db_xref="RGD:1583193"
     CDS             527..3490
                     /gene="Ephb4"
                     /codon_start=1
                     /product="ephrin type-B receptor 4 isoform X2"
                     /protein_id="XP_003751204.1"
                     /db_xref="GeneID:686310"
                     /db_xref="RGD:1583193"
                     /translation="MELRALLCWASLATALEETLLNTKLETADLKWVTYPQAEGQWEE
                     LSGLDEEQHSVRTYEVCDMKRPGGQAHWLRTGWVPRRGAVHVYATIRFTMMECLSLPR
                     ASRSCKETFTVFYYESEADTATAHTPAWMENPYIKVDTVAAEHLTRKRPGAEATGKVN
                     IKTLRLGPLSKAGFYLAFQDQGACMALLSLHLFYKKCSRLVTNLTYFPETVPRELVVP
                     VAGSCVANAVPTASPSPSLYCREDGQWAEQQVTGCSCAPGYEAAEGNKVCRACGQGTF
                     KPQIGEEPCLPCPANSHSNNIGSPVCLCRIGYYRARSDPRSSPCTTPPSAPRSVVHHL
                     NGSSLRLEWSAPLESGGREDLTYAVRCRECRPGGSCLPCGGDLTFDPGPRDLVEPWVA
                     IRGLRPDVTYTFEVAALNGVSTLATGPPPFEPVNVTTDREVPPAVSDIRVTRSSPSSL
                     ILSWAIPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKQGASYLVQVR
                     ARSEAGYGPFGQEHHSQTQLDESESWREQLALIAGTAVVGVVLVLVVIIIAVLCLRKQ
                     SSGREVEYSDKHGQYLIGHGTKVYIDPFTYEDPNEAVREFAKEIDVSYVKIEEVIGAG
                     EFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLEGV
                     VTNSVPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVHRD
                     LAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGGKIPIRWTAPEAIAFRKFT
                     SASDAWSYGIVMWEVMSFGERPYWDMSNQDVINAIEQDYRLPPPPDCPTSLHQLMLDC
                     WQKDRNARPRFPQVVSALDKMIRNPASLKIVARENGGASHPLLDQRQPHYSAFGSVGE
                     WLRAIKMGRYEESFAAAGFGSFEVVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQA
                     KPGAPGGTGGPTQQF"
ORIGIN      
        1 atgcgcccct ccctcctagg ccaggcgccg cccgactcag tctcaactcg gcccagctct
       61 ggcccagcct gtctccctcg ctctgttcgg tccccacttt ggcttctacc cgctttgacc
      121 gcaaccggcg cactcagctt ggcggcgcga gagccaccta ccactccagg gagcgagcaa
      181 gatcgcgagc aatcggccta ccccagccag ccagggcggg acctccgaag ccccgaaggg
      241 acccctaact ctcagccacg tcccgatctc cgcccgccca gcgacggcca ctgccaggac
      301 gtcccccctt aaggctggcc tccccgcgcg cgcgcgctgc ggcggggacg tgggggccgc
      361 acctgagcgc gggtgcccgg cgcgcccgca tgggccatcg ctgagaggcc cccgacggaa
      421 agtcccagct gcagagtcgg tgtgcacccg cccaggggag ggtcagacct gggggggcca
      481 gggcccccca aactcggatc gtattcagcc aaagtgaggc ggcgccatgg agctcagagc
      541 gctgctgtgc tgggcttccc tcgccactgc tttagaagag accctgctga acacaaaact
      601 ggagacggca gatctgaaat gggtgactta ccctcaggca gaaggccagt gggaggagct
      661 aagcggcctg gatgaggaac agcacagcgt gcgcacctat gaggtgtgcg atatgaagcg
      721 tccagggggc caggcacact ggctgcgcac tggctgggtc ccacggcgag gtgctgtcca
      781 cgtgtatgcc acgatacgct tcaccatgat ggaatgtctg tccctgccga gggccagtcg
      841 ctcctgcaag gagacattca ccgtcttcta ttatgagagc gaagccgata ctgccacggc
      901 ccacacgcca gcctggatgg agaaccccta catcaaggtg gacacagtgg ctgcggaaca
      961 tctgactcgg aagcgccctg gagctgaagc aacagggaaa gttaacatca agacgctgcg
     1021 cctgggtcct ctcagcaaag ccggcttcta cctggctttc caggaccaag gagcctgcat
     1081 ggccctgctc tccttgcatc tcttttacaa gaagtgctcc cggctggtca cgaacttgac
     1141 ctacttcccc gagacggtgc ctcgggagct cgtggtgcca gtggcaggta gctgcgtggc
     1201 caatgccgtc cctacggcca gccccagccc cagcctctac tgccgggaag atggtcagtg
     1261 ggctgagcag caggtcacgg gctgcagctg cgcgccaggg tacgaggccg cggaagggaa
     1321 caaagtgtgc agagcctgtg gccaggggac cttcaagccc caaataggag aagagccctg
     1381 cctgccatgc ccagccaaca gccactctaa taacattggg tctcctgtct gcctgtgtcg
     1441 gattgggtat taccgggccc gctcggatcc ccgcagttcg ccttgtacca ccccaccctc
     1501 tgctccaaga agcgtagttc accatctgaa tggctcctcc ctgcgcctgg agtggagtgc
     1561 cccccttgag tctggaggcc gagaggacct cacttatgct gtacgctgcc gagaatgccg
     1621 tcctgggggt tcctgcttgc cctgtggggg cgacctgact ttcgaccctg gtcctcgaga
     1681 cctggttgag ccctgggtgg caatccgagg gctgcgtcct gatgtcacct atacctttga
     1741 ggttgctgct ttgaatggtg tgtctacctt agccaccgga ccacctcctt ttgagcctgt
     1801 caatgtcacc actgaccgtg aagtgcctcc cgcggtgtct gacatccgag tcactcggtc
     1861 ctcacccagc agcttgatcc tgtcatgggc tatccccaga gcacccagtg gggccgtgct
     1921 ggactacgag gtcaagtatc acgagaaggg cgcagagggc cctagcagtg tacgtttcct
     1981 gaagacatca gaaaaccgag ctgagctccg ggggctgaag cagggagcca gctacctggt
     2041 ccaggtccgt gcacggtccg aggccggcta tggtcccttt ggccaagagc atcacagtca
     2101 gactcaactg gatgagagcg agagttggcg ggaacagctg gccctgatcg caggcaccgc
     2161 ggttgtaggc gtggtcctgg tcctggtggt cattattatc gcagttcttt gcctcaggaa
     2221 gcagagcagt gggagggaag tcgagtactc cgataaacat gggcaatatc tcatcgggca
     2281 cggtaccaag gtctacattg atccctttac ttacgaagac cctaatgagg cagtgaggga
     2341 atttgccaaa gagattgatg tctcctatgt caagattgaa gaggtaattg gtgcaggtga
     2401 gttcggtgag gtgtgccggg gtcggctgaa ggcaccaggg aaaaaggaga gctgtgtggc
     2461 catcaagacc ttgaagggtg gctacacgga gcgccagaga cgtgagttcc tgagcgaggc
     2521 ctccatcatg ggtcagttcg agcatcccaa catcatccgc ctcgagggtg tggtcactaa
     2581 cagcgtgccc gtcatgatcc tcacagaatt catggagaat ggagccctag actctttcct
     2641 gcggctgaac gacgggcagt tcacagtcat tcagctggtg ggcatgctga gaggcattgc
     2701 ctcaggcatg cggtacctgg ccgaaatgag ctatgtccat cgagacctgg ccgctcggaa
     2761 catcctggtc aacagtaacc tggtctgcaa ggtgtccgac tttggcctct ccagattcct
     2821 ggaggagaac tcctctgatc ccacctacac aagttccctg ggaggaaaga ttcccatccg
     2881 atggaccgcc cctgaggcca ttgccttcag gaaattcacg tctgccagtg atgcctggag
     2941 ctatgggatc gtcatgtggg aggtcatgtc tttcggggaa cggccatact gggacatgag
     3001 caaccaggac gtgatcaatg ctattgaaca ggactaccgg ctgccccctc ccccagattg
     3061 ccccacctcc ctccaccagc tcatgctgga ctgttggcag aaggaccgga atgcccggcc
     3121 ccgattcccc caggtggtca gcgctctgga caagatgatc cggaatcccg ctagcctcaa
     3181 aatcgtggcc agggagaatg gcggggcctc acatccactc ctggaccaac ggcagcctca
     3241 ctactctgct tttggttctg tgggcgagtg gcttcgagcc atcaagatgg gaagatacga
     3301 ggaaagtttt gcagcggctg gattcggctc ctttgaggtg gtcagccaga tctctgccga
     3361 ggaccttctc cgaattggag tcactctggc aggacaccag aagaaaatct tagccagtgt
     3421 gcagcatatg aagtcccaag ctaagccagg agcccccggt gggacaggag gaccaaccca
     3481 gcagttctga cctccaaggg ctcaccaccc cagagctgag gggggcagag ttgggtgggg
     3541 actcacaaga tgagcccctc cccctcatca cagcttccca ttggattgca ctttgaacag
     3601 aaggggtagg agctgttaat cctggagacc cagccttgag gaaactgtgc catatgggat
     3661 gggaagaatc acacgggtgc cctccaggcg ggaaacccca aactcaacag tgagtctttc
     3721 cttcaagact gggcaaagaa catccctacg tctctaatct cccatcttcc cagagggctc
     3781 tctcctcaag cgtcttccac ctcaacgggc atgtccctgc agaccaaaga gaaaaggtga
     3841 ccagcctgcc aacttgggag tggaaaatgc cgtcccagaa ggcaggacgg ggctgtcagg
     3901 actcggtgat gtaatcattg gattctgatg tcccaacttg ctgtcaccac caaaggcaat
     3961 cattttccct tgtaaatgct ccttccctca tctgccttca tattgaaggt tctggagttt
     4021 tactattttt tattttgtta ttttttttcc tccttctctt ccctccccac cccccttgtc
     4081 cagattttgt gcgttgaagg gtacctggtt cgactatctc ctgttgggaa caaggacccg
     4141 ttgatatgtt ctagaacagt gcctttgaaa tgccatagcc tcagacagtt agttccttcc
     4201 tccttccctc cccctaagtg cccccaagct gtgttgtgag tggagggaag ggggggtgat
     4261 gttgtaaaag gggcaggagg gtggtggcgg tcaacaggag gcagacaccg gtgcttggaa
     4321 gggggttctt aaattatatt taaaaagaaa cttttttttt ttgtataaat aaaagaaaac
     4381 gggatctgtc tcagta
//
