LOCUS       XM_039097337            7957 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ectopic P-granules 5 autophagy
            tethering factor (Epg5), transcript variant X5, mRNA.
ACCESSION   XM_039097337
VERSION     XM_039097337.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097337.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7957
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7957
                     /gene="Epg5"
                     /note="ectopic P-granules 5 autophagy tethering factor;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 42 ESTs, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 55 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:364902"
                     /db_xref="RGD:1306286"
     CDS             181..5616
                     /gene="Epg5"
                     /codon_start=1
                     /product="ectopic P granules protein 5 homolog isoform X4"
                     /protein_id="XP_038953265.1"
                     /db_xref="GeneID:364902"
                     /db_xref="RGD:1306286"
                     /translation="MNSSEEICLLTTFAQMARARRTNVDEGFIKIIVLEIYEVSYVIL
                     STRETFSKVGRELLGSIAAVHPEIISVLLDRVQETIDQVGMVSLYLFKELPLHLWRPS
                     ASEIAVIRDWLLSYNLAAVKNKLACVILEGLNWGFAKQGNLHLDQALHTEVALLVLEA
                     YQKYLAQKPYAGLISESMKQVSYLASIVRYGETPETSFNQWAWNLILRLKLHKNDFGR
                     QNFPVVPFCNTVPDMTESSMFHPLLKAVKSGLPIGCYLALAVTAVGHSIEKFCAEGIP
                     LLGVLVQSRHLRAVVHVLDKVLPVFYPCQYYLLKNEQFLSNLLLFLHLDSGVPQGVTQ
                     QVTHRVAHHLTGAIHGDNVKLLNSMIQAHICVSTQPDEVGPVAVLEFWVQALISQHLW
                     YREQSILFLMDHLCKTAFQLMQEDCVQKLLYQQHKNALGYHCDRSLLSSLVNWIVAGN
                     ITPSFVEGLSTSTQVWFAWTVLNMESIFEEDSQLRRVVERELVINAFSPDQALKKAQV
                     QLKLPIVPSLQRLLIYRWAHQALVTPADHPLLPLIWQKFFLLYLHRPGPQYGLPVDGC
                     IGRRFFQSPSHVNLLKDMKRRLTEVADFHYAASKALRVPAEGSEGTPERQAGTPGFLT
                     SPELHRELVRLFNVYILWLEDENFQKGDIYIPSLPKHYDVYRLAKVMQNQQDLWMEYA
                     NMERIQHEFQETVALWTQAKLESHSVPCSSSTQLDFTDPLLAKERVLSNLQRHEAPHP
                     PLVLHPMRPPVPLISSAVLLAQKDATQLMCADLNLLQQQARTATLRESQQVALDGELL
                     EAMPKQYVNREEQATLHLECRGSSGKKCQGAAVVTVQFEGMCKNEAISQQVHVLQKEV
                     WQFQAEAAQPPALNVVEAAVHAENLITALVNTYKLQPTPGVQKVGISLFFTVVDYVSE
                     ETQRHPPTRQFFTSCIEILGQVFISGTKSECKKLLQTILKNRRLCSLLSPFFTPNAAP
                     AEFIPLYEKVAKCLSEDNSDLVFMLLTKFDVQQWLSSTKPPLSDRTRLLESIHLALTA
                     WGLEPEEDIMMPFNLFCKHWTHLLLYQFPDQYSDVLRLLVQSSAEQLLSPECWKATLK
                     ALGCYAPSIQQGEASVESSVLHSASDVLLSDKQVTETVQWLSDFFYKLRLSKLDFKSF
                     GLFSKWSPYMADVKTFLGYLVKRLTDLELASLAQDPTASSKEVLRSLHSQIIQLFKPW
                     ILVLEDTESSHQRHYPWLESDTVVASSLVQLFTDCVSSLHASFKDKLLPGDEGALRLH
                     LLHYTESCTAPRMPEFILYAFHSAYQKLEWKDLHPDQRLMEAFFKVERGSPKSCFLFL
                     GSVLCRVNWVSVLSDAWSPSPLPETQSMVVCLLFMMVLLAKEAQLVDETDSPLLSLLG
                     QTSSLSWHLVDFVSYQSVLGYFSSHYPPSVILAQDCSAELIVRLLKVSAGLSLPADSR
                     KHVDIVPKCQAFTHQMAQFLSALEQDGKVAFPALGQEVSKLLDDIITFNPPDMDSQTR
                     HMALSSLFMEVLMMMNSAAVPTAEYLGVSIRTWIGQKVHGLVVLPLLTAACQSLASVR
                     HMAETTEACITAYFKESSLDQNLGWGPILVSLQVPELTMQEFLQECLALGSCLTLYVY
                     LLQCLNSEQTVKNEMKVLLILSTWLEHVYPSSAQEEAKLLLWWHQALQLSLVQLEQDD
                     SVLTESVIRILLMLQGRQSLMAEERLSSGILGAIGLGRKSPLSNRFRVVARSMAAFLS
                     VQVPAEDQIRLKPSSELHLTPKAQQVLAALESMTLSKQYVEYQDQILHAVQFIRHPGH
                     CLQNGKSFLAFFVNRLYPEVHYLDNIR"
ORIGIN      
        1 ccctttggca cgctgtcggt ccagatgctc tggaagctgt tctacctcat gcaccaggtg
       61 gagagtggga acctgcagca actctgtgcc tccctgcagc cggccgagtg caagaggcag
      121 ctccaaggta cctgagcaga cccagaacat gttgcgagct ttgagaagtg tctttcctcc
      181 atgaacagct cagaggagat ctgtctcctg acgacctttg cccagatggc tcgggccaga
      241 agaactaatg tggatgaagg ctttattaaa atcattgttc tagagatcta tgaggtatct
      301 tacgtcatac tgtccaccag agagactttt tcaaaggttg gtcgagagct tttggggtcc
      361 atcgcagctg ttcaccctga gattatttct gtccttttgg atagagtgca agagaccatc
      421 gaccaagttg gaatggtctc tttatacttg tttaaagagc tgcctttgca cctttggcgg
      481 ccttctgcct ctgagatagc tgtgattcgg gactggctac tgagctataa tctggcagca
      541 gtgaagaaca agctggcctg cgtgatccta gaaggactga attggggatt tgccaaacag
      601 ggtaaccttc atttggatca agcattgcac actgaagtgg ccttactagt gctcgaggct
      661 tatcagaaat acctggcaca gaagccctat gccgggctta tttctgaaag catgaaacag
      721 gtttcctatt tggccagtat tgttcgatat ggagagactc ctgaaacctc atttaaccag
      781 tgggcctgga atttaatctt gaggttaaaa ttacacaaaa atgattttgg aagacagaac
      841 tttccggtcg ttcccttctg caacacagta cctgacatga cagaatcctc catgtttcat
      901 cctctcttga aggctgtgaa atcaggcttg cccattggct gctatctcgc tctagctgtg
      961 acagctgttg gccacagcat tgagaagttc tgtgcagaag gcatcccgct gttgggcgtt
     1021 ctggtgcagt cccggcatct gagggcagtg gtccatgtcc tggataaggt cctccctgtg
     1081 ttctacccat gccagtacta ccttctgaag aatgagcagt ttttgtcgaa ccttctcctc
     1141 ttcctacact tggacagtgg tgttcctcag ggggtcaccc agcaggtcac ccacagggtg
     1201 gcacatcatc tgacaggagc catccatgga gacaatgtga aacttctcaa cagcatgatc
     1261 caggcacaca tatgtgtgag cactcagccg gatgaagtag gtcctgtggc tgtgttggag
     1321 ttctgggtcc aggctctcat aagccagcat ctgtggtacc gagaacagtc catactcttt
     1381 ctcatggacc atttgtgtaa gactgctttt cagctgatgc aggaagattg tgttcaaaaa
     1441 ttgctctacc aacagcacaa gaatgctttg ggttaccact gtgaccggag tctactctct
     1501 tccttggtga actggattgt ggcaggaaac attactcctt ccttcgtgga gggcttgtcc
     1561 acgtccacac aggtttggtt tgcatggact gtgttgaaca tggaatccat ctttgaagag
     1621 gactctcagc tccgaagagt tgttgaaagg gaattggtta taaatgcttt tagccctgac
     1681 caagctctaa agaaagccca ggtccagctg aagctgccca tcgtcccgtc cctgcagcgg
     1741 ctgctgattt accgctgggc ccaccaggct ctggtcacac ctgctgatca tcctcttctg
     1801 ccactcattt ggcagaagtt cttcctcctg tatctccatc gcccaggacc acaatatggg
     1861 ttacctgtgg atggttgtat tggaagaagg ttttttcaaa gtccctcgca tgtcaatttg
     1921 ttgaaagaca tgaagagacg actgacagag gtggctgact tccactatgc tgcaagcaag
     1981 gccctccgtg ttccagcaga gggcagtgaa gggacaccag agcggcaggc tggcacccct
     2041 ggtttcctga cttccccaga actgcacagg gagctagtga ggctcttcaa tgtgtatata
     2101 ttatggctag aagacgaaaa ttttcagaaa ggggatatct atattccttc cttgccaaag
     2161 cattatgatg tttacaggct agcaaaagtg atgcagaatc agcaggacct gtggatggag
     2221 tacgcgaata tggagcgcat ccagcatgag ttccaggaga cagttgctct gtggacacag
     2281 gccaagctcg agtcccattc tgtgccttgc agctcttcaa cccagctgga tttcacggac
     2341 cctttgctgg ctaaagaaag ggtcctaagt aacctacaga ggcatgaggc tccgcatcct
     2401 cctcttgttc tgcaccccat gaggcctcct gtgccactca tttcctcagc cgtgctgctg
     2461 gctcagaagg atgccaccca gctgatgtgc gcagacctga atctgttgca gcagcaggcc
     2521 agaactgcca ctctccggga gtcacagcag gttgccttgg acggtgagct gttggaggcc
     2581 atgcccaaac agtatgttaa ccgagaagag caggccaccc tgcatctgga gtgcagaggc
     2641 agcagtggca agaagtgcca aggagcagcg gtcgtgacag ttcagtttga aggcatgtgc
     2701 aagaatgaag ccataagcca gcaggtccat gttctgcaga aagaagtgtg gcagttccaa
     2761 gcagaagctg ctcagccccc agcgctaaat gttgtagagg ccgctgtgca tgcagaaaac
     2821 ttgatcacgg ccttagtgaa cacttataag ttacagccta cgcctggagt tcagaaagtt
     2881 ggcatcagcc ttttctttac tgtggtggac tacgtgagtg aggagaccca gcgccatcct
     2941 cctaccaggc agttcttcac gtcgtgcatc gagatcttgg gacaggtgtt tattagcggc
     3001 actaagtccg agtgcaagaa gttactacag accatcctga agaacaggcg gctgtgctct
     3061 ctgctctctc ctttcttcac tcccaatgct gcgcccgccg agttcatccc actgtacgag
     3121 aaagtggcca agtgtctgag cgaggacaac agtgacctgg tcttcatgct gctcaccaag
     3181 ttcgatgttc agcagtggtt aagcagcact aaaccccctc tgtctgaccg caccaggctc
     3241 ctggagtcca ttcacttggc actcactgcc tggggccttg aaccagagga agatattatg
     3301 atgccattta atcttttctg taagcactgg actcacctcc tactctacca gttccctgac
     3361 cagtacagtg acgtcctcag gctgctggtg cagagctccg cagagcagct gctgagtcct
     3421 gagtgctgga aagccacttt gaaagccctg ggctgctatg ctccgagcat ccagcagggg
     3481 gaggcctccg tggagagctc tgtgcttcac agcgcctcgg atgttctctt gtcagacaag
     3541 caggtaacgg agacggtaca gtggctttct gacttctttt ataagcttcg gttatccaag
     3601 ttggacttta aaagctttgg attattttca aagtggagcc cttacatggc tgatgtgaag
     3661 acctttttgg gatacctcgt gaaaaggctg actgacttag aactagcctc cttggcccag
     3721 gacccaactg ccagcagcaa agaagtgctg agatctctgc actcacagat catccagctt
     3781 tttaagcctt ggatcctggt tttagaggac actgaaagta gccaccagcg acattacccc
     3841 tggctggaga gtgataccgt ggtggcctcc agccttgtgc agctcttcac tgactgtgtc
     3901 agctcactgc acgcgagttt taaagacaag ctgttgccag gggacgaagg agccctgcgc
     3961 ttgcacctgc tgcattacac tgaatcctgc acagcaccca ggatgccaga gttcattctc
     4021 tacgcctttc acagtgcgta ccagaagctc gagtggaagg acctgcaccc tgaccagaga
     4081 ctcatggagg ccttcttcaa ggtggagcgt gggagcccca agagttgttt cctgtttctg
     4141 gggtctgtac tttgtagagt caactgggtt agtgtgttgt ctgatgcctg gagtcccagc
     4201 ccccttcctg agacccagag catggttgtc tgcctccttt tcatgatggt tttactggca
     4261 aaggaggctc agctagtcga cgagacggac tcacctttgc tgagtctcct gggacagacg
     4321 agctcactct cctggcatct tgtggacttt gtgtcatacc agagcgtgct gggttacttc
     4381 agcagtcatt acccaccatc cgtcatcctg gcgcaggatt gctctgccga gctgatagtg
     4441 aggctcttaa aagtctctgc aggactttct cttcctgctg acagccggaa gcatgttgac
     4501 atagttccaa agtgccaggc tttcacccat cagatggccc agttcctcag tgccctggag
     4561 caggacggga aagtcgcctt cccagcacta gggcaggaag tgtctaagct tttggatgac
     4621 atcattacct ttaacccacc cgacatggac agccagaccc gccacatggc cctcagcagc
     4681 ctcttcatgg aggtcctaat gatgatgaac agtgcagcag ttcccacagc agaatacctc
     4741 ggtgtcagta ttcggacctg gattggccaa aaagtgcatg ggttggtggt gctgcccctt
     4801 ttaacagcgg cctgccaaag cctggcatca gtccgccaca tggcagagac cacagaagcc
     4861 tgcatcactg cctacttcaa ggaaagctcc ctcgatcaga atttaggatg gggccccatt
     4921 ctggtgtccc ttcaagttcc cgagctcacc atgcaagagt ttctgcagga gtgtttagcc
     4981 cttggtagtt gtttgactct ctatgtctac ctgcttcagt gtctaaacag tgaacagact
     5041 gtgaagaacg agatgaaagt gctcctcatc ctcagcacgt ggctggaaca cgtgtaccca
     5101 agctctgcac aggaggaggc aaagctgctt ctgtggtggc atcaggccct gcagctgtct
     5161 ctggttcagc tggagcagga cgactcggtg ctgacggagt ccgtcatccg gatcctgctc
     5221 atgctacagg gcaggcagag cctcatggcc gaggagaggc tcagctctgg gattctgggg
     5281 gcaattgggt tgggccggaa atcaccactg tccaacaggt tccgagtggt tgcccggagc
     5341 atggccgcct tcctgtcagt tcaggtgcct gcagaagacc agattcgtct gaagcccagc
     5401 tctgaattac atctcactcc gaaagctcag caggtgctgg cagctcttga gtccatgacg
     5461 ctgagtaagc agtatgtgga gtaccaggac cagatactgc atgctgtcca gtttataaga
     5521 catcctggcc actgccttca gaacgggaaa agcttcctgg ccttttttgt taaccgtctc
     5581 tacccagaag tgcattatct ggacaacatc cggtagtggg cagaagcccg agaagcaccg
     5641 cgttgcccct gtgtttacat tacctgtgct cttgtgcatg tatctttgct atttcaccac
     5701 agagctcagt tctgcctgcc ccaactgagg tgcagggcag gcatcaggta gtctgggtgt
     5761 atgtgtattg tctcttactg cccagcggcc attttagtgc gaatgccctt cctcaaggac
     5821 aactcagttg ccctgcgtac agaaccactc acatctcggg gctgtgccaa tcagctccct
     5881 aagaacaaca acagatggag cttttggtat gtctgcactt ccgtctccct gctttgttta
     5941 aatgtcagga ctcctgtgcc agatctgacc tctgtgggag gcatgaagag ccctctttgg
     6001 actccattgt agtcttccga tgtaaacatc ctgcatttct caaatgtggg aaaacacacc
     6061 agcttaaaag tattgtgtta ctgctcttag agtaaagatg atacactgga tcatttcagg
     6121 agtgggtaca cacctgtcct ctgagcccat aggtggctga agtggcatga tcgcaggggt
     6181 gtgaggcagt atgaagtgca catggagagc atctcaacaa acagaacaga gcaaagaagc
     6241 cgaactgaaa tgagtcctgt gaggacgaca tgtcacttag ccttgcccac cgtggacagc
     6301 acagatggcg acacatcctg tgaagtgagc ttgtatggac tcatgtggca gcgtcactgt
     6361 ggccgctgaa ctgcacgggt ctatcttatt tggtccttgt agtgggagca cacacaaccc
     6421 tgaccgcagc cgccagggca cagggaaccc tgggtccctc attcgtaatg ctttgttggc
     6481 ctggtctatg tggaattccc agctcttgta ataagtcaga gctctctgcc gggcttactg
     6541 tcagggacac tgggactcta aacttcttcc ttaggtaaat tcagatgaag ctcatggaca
     6601 cgctggacac gtccagagag gaggggcggg tcaggggaat ttgagcaatt tggcttttgt
     6661 gagtagctct gtgcctctcc tgtcattgct gagtcctctt tactcgtcca gcacagcgct
     6721 ctgttcccgt cacatctctt gctcatgtca cccacttcct gtagagttag aaatttgact
     6781 tctgtcaatc tagtcctact tctcagaaac ggccccaagt gggttttgca ggtccaactt
     6841 aaaacatgtc tctctcttta tgggtttagg cctagaaata tctgtgtaaa atcaatgaat
     6901 ggccaccaag agccttgact aaagatggga catacattag tggggtccct cccccacact
     6961 tggaagcttg taggaacttc ttattggaca ggacaagtct gcctagtaga catgtcttgg
     7021 aacactgata aaggacatcc tgttcagtgg caccaagtgt cattgtcagg catctgtctc
     7081 agccttcgtt tcttctgctt ctctctgcgt tccagatctg tcatcctcac tccaatagaa
     7141 gaagcttcag aagctgaaga ctgctgaaca aacatcagtg attctgaggc caggaaacac
     7201 tgtttgtgca gtttctccaa ggagaaccaa gttaccaata tcctagaatg tgaaatgttt
     7261 gagtgatagt gtgtacagtt tagaaaatca attaattttg gaaatttata atatttgtaa
     7321 attttatctg taaaaagtat aaacaataaa atcagccttt cattgtaatt gaggaatctg
     7381 aattgaaggc tactgtagat ttttatgact gataataaat ttatttggct ttgtaactgg
     7441 tcggtaaaag tgccaccttt ttcatccttg cttaacatct cagttatttg cttcagattc
     7501 tatgagaagc actgagctaa gtctttaaaa atatgtaata attcagaaca aaaaggctgc
     7561 ctgctgctga aagataagcc tggccttgct gggaaaacag tccacttgga gagtgcaagc
     7621 ccctgacatc agagccagtg atgggcacct gacgtccttg tcaccaagca aggctgttgg
     7681 cagagcagtg tggaaggtgg aagcttccca ggaacagatg gagtgttggt ctcagtggaa
     7741 gcgtctctgc ctctccaggc attgcccacc accgtggagt gcacaggtgg ggcagggagg
     7801 gtgctctggc cttccctgct ctatagcctc actggagcag gtgacggcag ggtccagtgt
     7861 gatggtaaag gctagcaccc actgtgcaca cttgaccttg gctctaaaca tgactggtgg
     7921 gtgtcttgct ggttaagcct ccacctctcc tgtgtca
//
