LOCUS       XM_006234155            4176 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus enhancer of polycomb homolog 2 (Epc2),
            transcript variant X1, mRNA.
ACCESSION   XM_006234155
VERSION     XM_006234155.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006234155.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006234155.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4176
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4176
                     /gene="Epc2"
                     /note="enhancer of polycomb homolog 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 30 ESTs, 3 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 185 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:362132"
                     /db_xref="RGD:1307271"
     CDS             1..2235
                     /gene="Epc2"
                     /codon_start=1
                     /product="enhancer of polycomb homolog 2 isoform X1"
                     /protein_id="XP_006234217.1"
                     /db_xref="GeneID:362132"
                     /db_xref="RGD:1307271"
                     /translation="MSKLSFRARALDAAKPLPIYRGKDMPDLNDCVSINRAVPQMPTG
                     MEKEEESEHHLQRAISAQQVFREKKESMVIPVPEAESNVNYYNRLYKGEFKQPKQFIH
                     IQPFNLDNEQPDYDMDSEDETLLNRLNRKMEIKPLQFEIMIDRLEKASSNQLVTLQEA
                     KLLLNEDDYLIKAVYDYWVRKRKNCRGPSLIPQIKQEKRDGSTNNDPYVAFRRRTEKM
                     QTRKNRKNDEASYEKMLKLRREFSRAITILEMIKRREKTKRELLHLTLEVVEKRYHLG
                     DYGGEILNEVKVNRSEKELYASPATLHNGNHHKVQECKTKVPSPASEPEEENDPDGPC
                     AFRRRAGCQYYAPRLDQANNHPCESSELADLDKLRYKHCLTTLTVPRRCIGFARRRIG
                     RGGRVIMDRISTEHDPVLKQIDPEMLNGLSSSSQTIDFSSNFSRTNASSKPCENRLSL
                     SEILSNIRSCRLQCFQPRLLNVQDIDSEECTSRKPGQTVSSKRVSAASVALLNTSKNG
                     ISVTGGITEEQFQTHQQQLAQMQRQQLAQLQQKQQSQHSSQQTHPKAQGSSTSDCMSK
                     TLDSASAHFAASAVVSAPVPSRSEGSKEQNTGHNNMNGVVQPSGPSKTLYSTNMALSS
                     SPGISAVQLVRTVGHTTTNHLIPALCTSSPQTLPMNNSCLTNAVHLNNVSVVSPVNVH
                     INTRTSAPSPTALKLATVAASMDRVPKVTPSSAISSIARENHEPERLGLNGIAETTVA
                     MEVT"
ORIGIN      
        1 atgagtaaac tctccttccg agcgcgggcg ctggacgccg ccaaaccgct gcccatctac
       61 cgcggcaagg acatgcctga tctcaacgac tgcgtctcca tcaaccgggc cgtgccccag
      121 atgcccaccg ggatggagaa ggaggaggaa tcggaacatc acttacagcg agctatttca
      181 gcacagcaag tatttagaga aaaaaaagag agcatggtca ttccagttcc tgaggcggag
      241 agcaacgtca actattacaa tcgcttgtac aaaggggagt ttaaacagcc caaacagttc
      301 attcatattc agccttttaa cctagacaat gagcaaccag attatgatat ggattctgaa
      361 gatgagacat tattaaatag acttaacaga aagatggaaa ttaaaccttt gcaatttgaa
      421 attatgattg acagacttga aaaagccagt tctaaccagc ttgtaacact tcaagaagca
      481 aaactgctgc tgaatgaaga cgactacctt attaaagctg tatatgacta ctgggtgagg
      541 aaacgcaaga actgcagggg gccgtccctc atcccccaga ttaagcaaga gaagagagat
      601 ggctctacca acaatgatcc ttatgttgcc tttcggagga gaacagagaa gatgcagact
      661 cggaagaacc gtaagaatga tgaggcttct tatgaaaaga tgctgaagct gaggcgggag
      721 ttcagcagag ccataacaat tttggaaatg attaagagaa gagagaaaac caaacgggaa
      781 ttattgcact taacgctgga agttgtggaa aaaagatatc atttgggaga ctatgggggt
      841 gaaatcctta atgaagtgaa agttaataga tcagaaaaag agttatatgc cagtccagca
      901 actcttcata atggaaatca tcacaaagtt caagaatgta aaactaaggt accatctcca
      961 gcatcagaac ctgaagaaga aaatgatcct gatggtccct gtgctttcag aaggcgggca
     1021 ggatgccagt attatgctcc gcgtttggac caagctaata accatccgtg tgaaagttca
     1081 gagttggcag acttggataa gttgaggtat aagcattgtc tcacaacact tacagttcca
     1141 agaagatgta tagggtttgc caggaggcga attggcaggg gtggaagggt cataatggac
     1201 cgaatatcca cagaacatga ccccgtccta aaacagatag accctgagat gctgaatggg
     1261 ctttcaagct cttcccaaac tatagacttt tcttctaatt tctctcggac caatgcttcc
     1321 agtaaacctt gtgaaaatag actgtccctt tctgaaatat taagcaatat cagatcatgt
     1381 cgactacagt gtttccagcc aaggctacta aatgtacagg acattgatag tgaagaatgt
     1441 acctcaagaa aaccagggca gactgtgagc agtaaaaggg tttctgcagc atctgtagct
     1501 ttattgaaca ccagcaagaa cggcatatca gtcacagggg gcatcacaga agagcagttt
     1561 cagacacatc aacagcagct agctcaaatg caaaggcagc aactcgcgca gcttcagcag
     1621 aaacagcaat cccagcattc ctcacagcag acacatccaa aagcacaggg ctcaagcacc
     1681 tcggactgta tgtctaaaac acttgactca gccagcgccc actttgctgc atctgcagtg
     1741 gtcagtgctc ctgttccaag tcgcagtgag ggatctaagg aacagaacac tggccacaac
     1801 aatatgaatg gtgttgtcca gccttcagga ccctctaaaa cattatattc caccaatatg
     1861 gctttatcat ccagcccagg gatttcagct gtacagcttg taaggacagt tggccacact
     1921 actacaaacc acttgatccc agcgttgtgc acaagcagtc ctcagacact tcccatgaac
     1981 aattcctgcc tgaccaatgc agtgcacctc aataatgtca gtgttgtttc tcctgtcaat
     2041 gtgcatatca atacacggac ttcagcacca tcgccaacag ccttaaaact tgccacagtt
     2101 gctgccagta tggacagagt gccaaaggtt actcccagca gtgccatcag cagcatagcc
     2161 agagagaacc atgaaccaga aagactgggt ttaaatggaa tagcagagac aacagtagct
     2221 atggaagtga cataacgtaa agtgtgtggc tttgacctgt gtggacggtt gcagtcattc
     2281 atattccagc ggaatacaaa ggcgacactc tggatcacag agcagaacaa tggacccaaa
     2341 tggagtacag tataccggat gttaagtcga tgtatgatgt atattttgta aaattgggaa
     2401 aatcactacc ttgtaaaata gtttatttgt atcatcaata ttatttctgt tacttgaata
     2461 gtagatattc atcatcatgc ttttgcactt gaatttgcaa ctgaatggat tttaaaaata
     2521 attctttaat gggatcatga gcatgaaatg ggatcctgca tcacttgttt taactattta
     2581 ttttgccatg tttacatttt gtatcttgta aaaaaaaata aatccaactt tgtgtctaaa
     2641 aagttaaaga ttcatagcta ggaaatgaaa ttcttgtaat ttttttctaa aggaactgta
     2701 aagttttcac ttggttcatt ttgtttcaca atttgactag atggactttt tggtaaacac
     2761 tttagtggca tttcactgtc aaatacgact tcaaggcaaa atagtatttt ctattactgt
     2821 gcaggggaaa gggatggatc gatacatgca aatttaatgt agtaactcac ttttccatat
     2881 attttgaatg tatatttcta tttataatac cagtttataa aaaataatta cacagaaaaa
     2941 gtggactagg aaattatgca tctagcacat ttaaactgtg cagatatgaa aatttttcat
     3001 ggattacatt ttatctgaag actgcatatt ttaactggct ttaaaactgt aacacaccac
     3061 ataaaagata tttaccaggt atgtattgca tcatatcatt gcaataatta ttggaagtct
     3121 atatatcgag ccatcccagg ttttgggagg ggggagggtt gtggcaagat tgtcttttca
     3181 attttggaga gttttcctgt ggctacaagg caagtaacgg gttggaaaac gtctgactgt
     3241 aagtgttgga caccttcata gtgtagtgtt ttagtgactt ttttatacgg ttcttgtaca
     3301 ttagatacgt gtagtggtgt ttcagaatgt ttgtttatgc actagttcag acaactttcc
     3361 ctgttacttg ttcttgataa gtgaaacctg cagggaaata aaaaatacat atcaaaacac
     3421 ggccatgctg catatgtgtt tatttcacca tgtgcacaca gtgtgagcga ggacaggagg
     3481 gacaggccgg cacgtgcagc acatgtcccc ccaggctttc ctggcattga ggagaaggtc
     3541 taaggctcat ccctgggctc gattgggttt cagataatcc aatataaact acctttgcta
     3601 tgaaagttct taaactattt tacagaatgt aagtaatttg cagtatagca gtcattgaaa
     3661 tctcataaat gagcctcctt ttataagtaa atagagtata gtgtagaatt atattgcgag
     3721 ggggttttgg aagtcctggg aaatgtaaat atttttaatg aatatgatta aaaccatttc
     3781 aaaccaaaca taattttata ccgtttttat atctgcagtc ctgaaagttg taaacttatt
     3841 gtcagttaaa ttaatgggcc aggatttctg ctgagagtgg tttttattca gatcctaaat
     3901 gtaaagcaat ttatggtcaa aaccacaggg ggaaaaataa atttaatgac tttgtcggtt
     3961 gtgacctgat aggatccatg ctcgtttttg ccatactacc tctggggttc actgctgatg
     4021 atataaagga aataacttga ttgatatgta tatgactgtg ttcattctgc ttacagttgg
     4081 atgtatcttg ctattaagaa tttgaaacaa ctcagtgcta atttcagaga aagcttctcc
     4141 cctcccccat ttcgctgaag taaagcatga agttaa
//
