LOCUS       XM_039095282            3450 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus enhancer of polycomb homolog 1 (Epc1),
            transcript variant X4, mRNA.
ACCESSION   XM_039095282
VERSION     XM_039095282.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3450
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3450
                     /gene="Epc1"
                     /note="enhancer of polycomb homolog 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 14 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100362678"
                     /db_xref="RGD:2324280"
     CDS             278..2062
                     /gene="Epc1"
                     /codon_start=1
                     /product="enhancer of polycomb homolog 1 isoform X4"
                     /protein_id="XP_038951210.1"
                     /db_xref="GeneID:100362678"
                     /db_xref="RGD:2324280"
                     /translation="MSKLSFRARALDASKPLPVFRCEDLPDLHEYASINRAVPQMPTG
                     MEKEEESEHHLQRAISAQQVYGEKRDNMVIPVPEAESNIAYYESIYPGEFKMPKQLIH
                     IQPFSLDAEQPDYDLDSEDEVFVNKLKKKMDICPVQFEEMIDRLEKGSGQQVQLHPVS
                     LQEAKLLLKEDDELIREVYEYWIKKRKTCRGPSLIPSVKQEKRDGSSTNDPYVAFRRR
                     TEKMQTRKNRKNDEASYEKMLKLRRDLSRAVTILEMIKRREKSKRELLHLTLEIMEKR
                     YNLGDYSGEIMSEVMAQRQPVKPTYAIPIIPITNSSQFKHQDVTDAKEFKVNKQDKAD
                     LIRPKRKYEKKPKVLPSSAAAPQQPSPAALPGFSAKDLNQYDFPSSDEEPLSQVLSGS
                     SEAEEENDPDGPFAFRRKAGCQYYAPHLDQTGNWPWTSPKDGGLGDVRYRYCLTTLTV
                     PQRCLGFARRRVGRGGRVLLDRAHSDYDSMFHHLDLDMLSSPQPSPVNQFANTSETNT
                     SDRPSSKDLSQILVDIKSCRWRHFRPRTPSLPDSDSGELSSRKLHRSISRAGPAQPGA
                     HTCSASTQSRSSSGSTHCEFISHYQGLS"
ORIGIN      
        1 agtgtgggga atggctgggg ttggctgaag agcgcacagt ggagttttaa tgtccgccat
       61 gttggccatg gcgtattgaa gagagcgagt gagcgaggcg cggagcggca cagcctccca
      121 ccctcccggc tggtgtcagg gcccggacgg cgggctttgc gctccgcccc caagtccccg
      181 gcagcggcag gcgagtggag accgaaactc cggttctcca tgatcccgct ggccggggcc
      241 gtttccccag agcggagagg tatctgctgc gcctgagatg agtaaactgt cgtttcgggc
      301 gcgggcgctg gacgcctcga agccgctgcc ggtcttccgc tgtgaggatc tgcccgacct
      361 gcacgaatac gcctcgataa accgggccgt gccgcagatg cccaccggaa tggagaagga
      421 agaggagtcg gaacaccatc ttcagcgggc tatctctgca cagcaggtgt acggcgagaa
      481 gcgggataac atggttattc cagttcctga agcagaaagt aacatcgctt actatgagtc
      541 catataccct ggggagttca agatgccaaa gcagctcatt cacatacagc ctttcagctt
      601 ggacgctgag cagcctgatt acgacctgga ttctgaggat gaagtctttg tgaataaact
      661 gaagaagaaa atggacatct gcccagtgca gtttgaggag atgattgacc ggttagaaaa
      721 aggcagcggt cagcaggtac aacttcatcc agtcagtctg caggaagcca aactacttct
      781 aaaagaagat gatgagttaa ttagagaagt ttatgaatac tggattaaaa agaggaaaac
      841 ctgccggggg ccatcactta tcccgtcggt aaaacaggaa aaacgagatg gttctagcac
      901 aaatgatcct tatgtggctt ttagaagacg aactgagaaa atgcaaactc gaaaaaatcg
      961 caaaaacgat gaagcctcct atgagaaaat gcttaagctg cgccgggatc tcagccgggc
     1021 tgtcaccatc ctggagatga tcaagagacg tgagaaaagt aaacgggagc tgctgcacct
     1081 gacactggag attatggaga agaggtataa tttaggtgac tacagtggag agatcatgtc
     1141 tgaggtcatg gcacagagac agccagtgaa gcctacctat gccatcccca tcatcccgat
     1201 tactaacagc agccagttca aacaccagga cgtcacggat gcgaaggagt tcaaagttaa
     1261 caagcaagat aaggctgatc ttattcggcc gaagcgcaaa tatgaaaaga agcccaaagt
     1321 cttaccgtcg tctgctgccg caccccagca gccaagtcct gctgcactgc caggcttcag
     1381 tgctaaagac ttaaaccagt acgacttccc cagctcagat gaagagcctc tgtcacaggt
     1441 tttgtctggc tcttcagaag ctgaggaaga gaatgaccct gatggccctt tcgctttccg
     1501 taggaaagca ggctgtcagt actatgctcc tcatttagac caaactggca actggccctg
     1561 gactagccct aaagatggag gcctggggga tgtgcgatat agatattgct taactactct
     1621 caccgtaccc cagaggtgtc ttggatttgc acgaagacgg gtcgggcgcg gtggaagggt
     1681 cttgctggac agagcgcatt cagactatga cagtatgttt caccacctgg atctggacat
     1741 gctttcctca ccacaacctt ctccagtcaa tcagtttgcc aatacctcag aaaccaatac
     1801 ctcggacaga ccttcctcta aagacctcag tcagatacta gtcgatatca aatcatgtag
     1861 atggcggcac tttaggcccc ggacaccatc ccttcctgac agtgacagtg gtgagctctc
     1921 cagtagaaag ttacacagaa gtataagtcg agcaggacca gcgcagcctg gggcccacac
     1981 gtgcagcgcc tccacacaga gcagaagtag cagtggctcg acacactgtg agttcatctc
     2041 tcattaccaa gggttgtcat agaaccttgc atctaaccag cagacacgtg gctctggcct
     2101 gaatgtacag ggtttagaaa gaacactcca ggtgagtatg gaagccgttc cctctgctgc
     2161 tgttatacag agtaacttaa gaacgtagct ctctaagttg taaagtagct tcattctgac
     2221 gggtctgtaa tgtactgtcc tcatcgcaaa gccccatgca gctgatgttc cagttccaga
     2281 gttaacccaa aaccatctgt tctgctctta agtatggaaa gatacttgct gtatagatag
     2341 acttggggct gaacggctga gaattgagtc cttccaagca tttaaaggaa atttcatttt
     2401 tgaagatgcg agaggccttt tcatttttaa attatgatgt cagatctttt tttaattaag
     2461 ggatggttgt cttactattg aaaggtgctt ctgggtggac agtgggtgga tattagcact
     2521 gagggtgggt aggaagaatg gtgtttggag attaaatgaa agaagttacg tatttgcctt
     2581 aatggatttg tccaggactg aactacctga gaaaattgaa actttctgct gctgttgtat
     2641 tctgcactaa taggcttatt tttgtaattg ctttgtatat attctgtatt atcataggaa
     2701 gatcaaaatg tgtaaacctt taagttagac aattaactat agctatgaaa atgaagtaga
     2761 tttcattggt ttgctgcttt tagagctgtg aagctgattc tggtgacctg tgtagtgaca
     2821 ctgactgact ctggtgacct gtgtagtaac actgactgac tctggtgacc tgtgtagtga
     2881 tgctgaccga ctctggtgac ctgtatagtg acgctgaccg actctggtga cctgtgtagt
     2941 gacgctgact gactctggtg acctgtgtag tgacattgac tgactctggt gacctgtgta
     3001 gtgacgctga ctgactctgg tgacctgtgt agtgatgctg actgactctg gtgacctgtg
     3061 tagtgacgct gactgactct ggtgacctgt gtagtgacat tgactgactc tggtgacctg
     3121 tgtagtgacg ctgactgact ctggtgacct gtgtgtagtg acgctgactg actctggtga
     3181 cctgtgtagt gaggctgact gactagtgac tctgtgcagt gatgctgacc gactctggtg
     3241 acctgtgtac tgatgctgac tgactctggt gacctgtgta gtgacgctga ctgactctgg
     3301 tgacctgtgt gtagtgacgc tgactgactc tggtgacctg tgtagtgacg ctgactgact
     3361 ctggtgacct gtgtagtgag gccgaccgac tttgatcacc tgtggtactg actgatactt
     3421 caagacaatt acactgatga cttttgtgtt
//
