LOCUS       XM_039095281            3792 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus enhancer of polycomb homolog 1 (Epc1),
            transcript variant X3, mRNA.
ACCESSION   XM_039095281
VERSION     XM_039095281.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095281.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3792
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3792
                     /gene="Epc1"
                     /note="enhancer of polycomb homolog 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 22 ESTs, 2 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     53 samples with support for all annotated introns"
                     /db_xref="GeneID:100362678"
                     /db_xref="RGD:2324280"
     CDS             228..2528
                     /gene="Epc1"
                     /codon_start=1
                     /product="enhancer of polycomb homolog 1 isoform X3"
                     /protein_id="XP_038951209.1"
                     /db_xref="GeneID:100362678"
                     /db_xref="RGD:2324280"
                     /translation="MEHHLQRAISAQQVYGEKRDNMVIPVPEAESNIAYYESIYPGEF
                     KMPKQLIHIQPFSLDAEQPDYDLDSEDEVFVNKLKKKMDICPVQFEEMIDRLEKGSGQ
                     QVQLHPVSLQEAKLLLKEDDELIREVYEYWIKKRKTCRGPSLIPSVKQEKRDGSSTND
                     PYVAFRRRTEKMQTRKNRKNDEASYEKMLKLRRDLSRAVTILEMIKRREKSKRELLHL
                     TLEIMEKRYNLGDYSGEIMSEVMAQRQPVKPTYAIPIIPITNSSQFKHQDVTDAKEFK
                     VNKQDKADLIRPKRKYEKKPKVLPSSAAAPQQPSPAALPGFSAKDLNQYDFPSSDEEP
                     LSQVLSGSSEAEEENDPDGPFAFRRKAGCQYYAPHLDQTGNWPWTSPKDGGLGDVRYR
                     YCLTTLTVPQRCLGFARRRVGRGGRVLLDRAHSDYDSMFHHLDLDMLSSPQPSPVNQF
                     ANTSETNTSDRPSSKDLSQILVDIKSCRWRHFRPRTPSLPDSDSGELSSRKLHRSISR
                     AGPAQPGAHTCSASTQSRSSSGSTHCAFTAEQYQQHQQQLALMQQQQLAQTQQQQANS
                     SSSTAAPQGFVSKTLDSASAQFAASALMTSEQLMGFKMKDDVVLGIGVNGVLPASGVY
                     KGLHLSSTTPTALVHTSPSTAGSTLLQPSNITQTSGSHSALSHQVTAANSATTQVLFG
                     NNIRLTVPSSVPTVNSIAPINARHIPRTLSAVPPSALKLAAAANCQVSKVPSSSSVDS
                     VPRENHESEKPALNNIADNTVAMEVT"
ORIGIN      
        1 gcagcctcca gcttgctcca ttccccccga cgccctcgga tcctgcggct gcccgccccg
       61 ctccgcgccc tccatggacg aaagtctcac ttttgattta ccaaatattt tcaggatgtt
      121 tgaagacccg tacgctgccc ggaggctgtt ttttctggac agcccagacc tcagcctata
      181 ttgttacaat ttttttttga gagctagctg ctgctttgcc tacaccgatg gaacaccatc
      241 ttcagcgggc tatctctgca cagcaggtgt acggcgagaa gcgggataac atggttattc
      301 cagttcctga agcagaaagt aacatcgctt actatgagtc catataccct ggggagttca
      361 agatgccaaa gcagctcatt cacatacagc ctttcagctt ggacgctgag cagcctgatt
      421 acgacctgga ttctgaggat gaagtctttg tgaataaact gaagaagaaa atggacatct
      481 gcccagtgca gtttgaggag atgattgacc ggttagaaaa aggcagcggt cagcaggtac
      541 aacttcatcc agtcagtctg caggaagcca aactacttct aaaagaagat gatgagttaa
      601 ttagagaagt ttatgaatac tggattaaaa agaggaaaac ctgccggggg ccatcactta
      661 tcccgtcggt aaaacaggaa aaacgagatg gttctagcac aaatgatcct tatgtggctt
      721 ttagaagacg aactgagaaa atgcaaactc gaaaaaatcg caaaaacgat gaagcctcct
      781 atgagaaaat gcttaagctg cgccgggatc tcagccgggc tgtcaccatc ctggagatga
      841 tcaagagacg tgagaaaagt aaacgggagc tgctgcacct gacactggag attatggaga
      901 agaggtataa tttaggtgac tacagtggag agatcatgtc tgaggtcatg gcacagagac
      961 agccagtgaa gcctacctat gccatcccca tcatcccgat tactaacagc agccagttca
     1021 aacaccagga cgtcacggat gcgaaggagt tcaaagttaa caagcaagat aaggctgatc
     1081 ttattcggcc gaagcgcaaa tatgaaaaga agcccaaagt cttaccgtcg tctgctgccg
     1141 caccccagca gccaagtcct gctgcactgc caggcttcag tgctaaagac ttaaaccagt
     1201 acgacttccc cagctcagat gaagagcctc tgtcacaggt tttgtctggc tcttcagaag
     1261 ctgaggaaga gaatgaccct gatggccctt tcgctttccg taggaaagca ggctgtcagt
     1321 actatgctcc tcatttagac caaactggca actggccctg gactagccct aaagatggag
     1381 gcctggggga tgtgcgatat agatattgct taactactct caccgtaccc cagaggtgtc
     1441 ttggatttgc acgaagacgg gtcgggcgcg gtggaagggt cttgctggac agagcgcatt
     1501 cagactatga cagtatgttt caccacctgg atctggacat gctttcctca ccacaacctt
     1561 ctccagtcaa tcagtttgcc aatacctcag aaaccaatac ctcggacaga ccttcctcta
     1621 aagacctcag tcagatacta gtcgatatca aatcatgtag atggcggcac tttaggcccc
     1681 ggacaccatc ccttcctgac agtgacagtg gtgagctctc cagtagaaag ttacacagaa
     1741 gtataagtcg agcaggacca gcgcagcctg gggcccacac gtgcagcgcc tccacacaga
     1801 gcagaagtag cagtggctcg acacactgtg catttacagc cgagcagtac cagcagcacc
     1861 agcagcaact ggcactcatg cagcagcagc agcttgcaca aactcagcag cagcaagcaa
     1921 atagcagttc ctccaccgcc gctccacagg gttttgtttc taagacgttg gattctgcca
     1981 gtgcacagtt cgctgcttct gctttaatga cgtcagaaca gctgatggga ttcaagatga
     2041 aggatgatgt ggtgcttggg attggggtga atggcgtcct tcccgcctca ggagtataca
     2101 agggcttgca cctcagcagc actacaccaa cggcgcttgt acatacgagt ccttcgaccg
     2161 caggttcaac cttgttacag ccttcaaata ttacacagac ttcgggttcc cacagcgcac
     2221 tgagtcacca agtaactgct gccaactctg caacaactca ggttctgttt gggaacaaca
     2281 tccgattaac tgtcccctca tctgtcccca ctgtcaactc tatcgcccca ataaacgcac
     2341 ggcatatacc taggacttta agtgctgttc cgccatctgc cttaaagctg gctgctgcag
     2401 caaactgtca agtttccaag gtcccctcct catcctctgt agattcagtt ccaagggaaa
     2461 atcatgaatc agaaaagcca gcactgaaca acatagcaga caacacagta gcaatggagg
     2521 tgacgtagct tcctgggagc aggactgcat cctggggaca tggtcaggtg ctatgcatca
     2581 gagcgttgga acgcagggag gatggagtgc gtaggcggtt ccgtggcagc tgtggggact
     2641 cggcagcact gcgcacctct cgtgcttcaa cctttctttt cttattgtta ataggaaaaa
     2701 atcaacatct gtaaattaag aatacagcaa ttatctgtac agtactgcat atttgtaata
     2761 cccttgtata tatgttactt gaatacagaa ctgttcattt gtgatgcttt gcacttgggg
     2821 gcggggggtg gggggtaact gcaacaagag tgtgagctgt gagattgtgt agctggtgtc
     2881 atcacatcat gtgcatggtg cggaacctgc tgtctctatt tattgtgccg tgtttacagg
     2941 ttttgtacac tgtaccctca ttggttcctg tgctgtagta aatgtgttag gtagctgtgg
     3001 actccttggt attttgtaaa tggtataaca taacttggtt ccctctgggt ccttgagttt
     3061 tctgtgtatc atgtgaaaaa aaaaatggtg acatacatac agaattttac aaaaaaaaaa
     3121 aaggcatcag ttttttaaaa cggggaatgt actgttcaat ggggatcttc ctggtctact
     3181 agcattagga tgcgcaacaa gctaaaaatg aagtctcttg aattctccca tccccgcctg
     3241 cctgcaagct tgggcagccc tggtacttaa agcactaatg ttatgttgct gccctacaaa
     3301 cagcccagtc gtcccatttc cttccacacc aaaaagtgtt aaatcaagta cacaaacgga
     3361 gtccttacaa ctggagttta tgttgtcttg cccttttttt agcacaaaaa gatgtacttt
     3421 tatattgtgg aattgtttaa agacttcatt ctttacttgt tcttacagaa aggatatagg
     3481 ggagaagaat gctgtccgtg tatcgtcatt ccagtttgta aaacagccag ccagcttttt
     3541 ccttttaaga ttctccagaa ggctgcgagg ccagaaccac aaatatcggg tgccttcctt
     3601 tggaaatatt tgacctctct tctgtgaaga gaatggtact taccagacta ctactgcttt
     3661 gttagtaccg aagtctgaat gcccagtcca atggcagaca tatgttatcc ttaaggtttt
     3721 taatcccacc tggaaacatt gtgatagaat tctcacaaaa taaacccagg gcattacatg
     3781 ttgacaaact aa
//
