LOCUS       NM_001401160            4977 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus erythrocyte membrane protein band 4.1 like 5
            (Epb41l5), transcript variant 1, mRNA.
ACCESSION   NM_001401160 XM_039090670
VERSION     NM_001401160.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4977)
  AUTHORS   Lee,J.D., Migeotte,I. and Anderson,K.V.
  TITLE     Left-right patterning in the mouse requires Epb4.1l5-dependent
            morphogenesis of the node and midline
  JOURNAL   Dev Biol 346 (2), 237-246 (2010)
   PUBMED   20678497
REFERENCE   2  (bases 1 to 4977)
  AUTHORS   Nakajima,H. and Tanoue,T.
  TITLE     Epithelial cell shape is regulated by Lulu proteins via myosin-II
  JOURNAL   J Cell Sci 123 (Pt 4), 555-566 (2010)
   PUBMED   20103536
REFERENCE   3  (bases 1 to 4977)
  AUTHORS   Hirano,M., Hashimoto,S., Yonemura,S., Sabe,H. and Aizawa,S.
  TITLE     EPB41L5 functions to post-transcriptionally regulate cadherin and
            integrin during epithelial-mesenchymal transition
  JOURNAL   J Cell Biol 182 (6), 1217-1230 (2008)
   PUBMED   18794329
REFERENCE   4  (bases 1 to 4977)
  AUTHORS   Lee,J.D., Silva-Gagliardi,N.F., Tepass,U., McGlade,C.J. and
            Anderson,K.V.
  TITLE     The FERM protein Epb4.1l5 is required for organization of the
            neural plate and for the epithelial-mesenchymal transition at the
            primitive streak of the mouse embryo
  JOURNAL   Development 134 (11), 2007-2016 (2007)
   PUBMED   17507402
REFERENCE   5  (bases 1 to 4977)
  AUTHORS   Garcia-Garcia,M.J., Eggenschwiler,J.T., Caspary,T., Alcorn,H.L.,
            Wyler,M.R., Huangfu,D., Rakeman,A.S., Lee,J.D., Feinberg,E.H.,
            Timmer,J.R. and Anderson,K.V.
  TITLE     Analysis of mouse embryonic patterning and morphogenesis by forward
            genetics
  JOURNAL   Proc Natl Acad Sci U S A 102 (17), 5913-5919 (2005)
   PUBMED   15755804
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Feb 3, 2022 this sequence version replaced XM_039090670.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: SRR26360186.568929.1 [ECO:0000331]
            RNAseq introns       :: mixed sample support SAMEA5760383,
                                    SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-178               JAXUCZ010000013.1  33320956-33321133   c
            179-360             JAXUCZ010000013.1  33316018-33316199   c
            361-465             JAXUCZ010000013.1  33305917-33306021   c
            466-508             JAXUCZ010000013.1  33294793-33294835   c
            509-587             JAXUCZ010000013.1  33292917-33292995   c
            588-632             JAXUCZ010000013.1  33291710-33291754   c
            633-685             JAXUCZ010000013.1  33291219-33291271   c
            686-806             JAXUCZ010000013.1  33288687-33288807   c
            807-894             JAXUCZ010000013.1  33288488-33288575   c
            895-983             JAXUCZ010000013.1  33287471-33287559   c
            984-1053            JAXUCZ010000013.1  33286380-33286449   c
            1054-1223           JAXUCZ010000013.1  33282255-33282424   c
            1224-1330           JAXUCZ010000013.1  33281147-33281253   c
            1331-1358           JAXUCZ010000013.1  33278937-33278964   c
            1359-1398           JAXUCZ010000013.1  33273334-33273373   c
            1399-1514           JAXUCZ010000013.1  33272115-33272230   c
            1515-1678           JAXUCZ010000013.1  33254022-33254185   c
            1679-1776           JAXUCZ010000013.1  33248413-33248510   c
            1777-1905           JAXUCZ010000013.1  33245705-33245833   c
            1906-1970           JAXUCZ010000013.1  33243551-33243615   c
            1971-2061           JAXUCZ010000013.1  33232951-33233041   c
            2062-2136           JAXUCZ010000013.1  33231343-33231417   c
            2137-2178           JAXUCZ010000013.1  33227747-33227788   c
            2179-2309           JAXUCZ010000013.1  33227009-33227139   c
            2310-4977           JAXUCZ010000013.1  33223589-33226256   c
FEATURES             Location/Qualifiers
     source          1..4977
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q11"
     gene            1..4977
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /note="erythrocyte membrane protein band 4.1 like 5"
                     /db_xref="GeneID:304733"
                     /db_xref="RGD:1311366"
     exon            1..178
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            179..360
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     CDS             181..2376
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /note="isoform 1 is encoded by transcript variant 1; band
                     4.1-like protein 5; erythrocyte protein band 4.1-like 5"
                     /codon_start=1
                     /product="band 4.1-like protein 5 isoform 1"
                     /protein_id="NP_001388089.1"
                     /db_xref="GeneID:304733"
                     /db_xref="RGD:1311366"
                     /translation="MLSFLRRTLGRRSMRKHAEKERLREAQRAATHIPAAGDAKSVIT
                     CRVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESDYFGLRFMDSAQVAHWLDGTK
                     SIKKQVKIGSPYCLHLRVKFYSSEPNNLREELTRYLFVLQLKQDILSGKLECPFDTAV
                     QLAAYNLQAELGDYDLAEHSPELVSEFRFVPTQTEEMELAIFEKWKEYRGQTPAQAET
                     NYLNKAKWLEMYGVDMHVVKARDGNDYSLGLTPTGVLVFEGETKIGLFFWPKITRLDF
                     KKNKLTLVVVEDDDQGKEQEHTFVFRLDHPKACKHLWKCAVEHHAFFRLRGPVQKGSH
                     RSGFIRLGSRFRYSGKTEYQTTKTNKARRSTSFERRPSKRYSRRTLQVKASTAKPDDL
                     GVHNASAQNNDSQQAWGMKSPVPVTSFSSSGPVLVETENLPQNSAADQHDRKRLPLSI
                     DLLNSPDLLETTIGDVTRPSDTSAPFPAPDDVNVATMSHELEELRADCETLKDDTEKL
                     KQLNTEQNILPSLRPAIDINVNSQEEVVKLTEKCLNNAIESPGLNTVRVPPDFKSNIL
                     KAQVEAVHKATREDSLLTHKNASVQDAATNSTVFNENNMPLCKDSLTPVHGTTADSDS
                     VLKDATDELDALLLSLTENLMDHTVTPQVSSSSMITPRWIIPQNSTISNGLAGYGVSL
                     TGTEGCNQKDGFSLISPPAPFLVDAVTSSAPPLPGDSALKQKCLLTTEL"
     exon            361..465
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            466..508
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            509..587
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            588..632
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            633..685
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            686..806
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            807..894
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            895..983
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            984..1053
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            1054..1223
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            1224..1330
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            1331..1358
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            1359..1398
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            1399..1514
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            1515..1678
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            1679..1776
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            1777..1905
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            1906..1970
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            1971..2061
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            2062..2136
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            2137..2178
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            2179..2309
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
     exon            2310..4977
                     /gene="Epb41l5"
                     /gene_synonym="Epb4.1l5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acgggcggcc ggggtcctcc ggggattagc gcagggtggg ctcgcgcctt gcgccgccat
       61 ttctcggcat ctctggagac ctgttctttc ctcctgccgg ctgggcgtct ctctcctagg
      121 tcgcgcgacc cgctcaccgt ggtctccgtc tcttcacggt gttcaccacc cagtacagaa
      181 atgcttagct tcctacgaag aacgcttggc cgccggtcta tgcgcaagca tgctgaaaag
      241 gagcgactcc gagaggcgca gcgtgctgcc acacacattc ctgcggctgg agatgccaag
      301 tccgtcatca catgcagggt gtcccttctg gatggtacag atgttagtgt ggacctgccg
      361 aaaaaagcca aaggacagga gctgtttgac caaattatgt atcacctgga cttgattgaa
      421 agtgactatt ttggtctgag attcatggac tcagcccaag tagcacattg gctggatggt
      481 acaaaaagca tcaaaaaaca agtaaaaatt ggttcaccct attgtcttca tcttcgagtt
      541 aagttttatt cctcggaacc aaataatctt cgtgaggagc taacccggta tttatttgtc
      601 cttcagctaa aacaagatat tctcagtggg aagttagagt gtccctttga tacagcagtt
      661 caattggcgg cttacaatct gcaagctgaa cttggcgact atgatcttgc tgaacatagt
      721 cctgaactgg tctctgagtt caggtttgtg cccacccaga ctgaagagat ggaactggct
      781 atttttgaga aatggaagga atacagaggt cagacaccag cacaagctga aaccaattac
      841 ctgaataaag ccaagtggct ggaaatgtat ggcgttgata tgcatgtggt caaggctaga
      901 gatggcaatg actatagctt gggactgact ccaacaggag tccttgtttt tgaaggagag
      961 accaaaattg gcctgttttt ctggcccaaa ataaccagat tggattttaa gaagaataaa
     1021 ttaactctgg tggttgtgga agatgatgat cagggcaaag aacaagagca taccttcgtc
     1081 tttagattgg atcatcctaa agcctgcaaa cacttatgga agtgtgctgt ggaacaccat
     1141 gccttcttcc gactccgagg acctgtccaa aagggttctc atcgatcggg attcattcga
     1201 ctaggatcac gatttagata cagtggaaaa acagagtatc agaccacaaa aactaataaa
     1261 gcaagaagat cgacctcatt tgaaagaagg cccagcaagc gatattcccg acggaccctg
     1321 caagtgaaag caagcacagc aaagcctgac gatcttggtg ttcataatgc ttcggcccag
     1381 aacaatgact cccaacaggc ttggggtatg aagtctcctg tgcctgtcac ttctttctca
     1441 tcctctggtc cagtgctggt ggagaccgag aatcttccac agaactctgc agcggaccaa
     1501 catgacagga aacgcttgcc cctgagcatt gatttgctca atagcccaga cttactagaa
     1561 acaaccattg gtgatgtaac caggccatca gatacctctg caccattccc agcaccagat
     1621 gacgttaatg tagccaccat gtcacatgaa ttagaggaac tcagagctga ctgtgagaca
     1681 ttaaaagatg acacggagaa gcttaaacag ctcaacacgg agcagaatat cttgccatct
     1741 cttcgccctg ccattgacat taatgtcaac agccaggaag aagtggtaaa gttgactgag
     1801 aaatgtctta ataatgccat tgagagccca ggattgaaca cagtaagggt tcctcctgac
     1861 ttcaagagta atattttgaa agctcaagta gaagctgtac ataaggctac aagagaagat
     1921 agtttattaa ctcataaaaa tgccagcgtt caggatgctg ccacaaacag tactgtgttc
     1981 aatgaaaata acatgcctct ctgcaaagac tccctcacgc cagtgcatgg cacaactgca
     2041 gacagtgact ctgtactaaa ggatgctact gatgagctgg acgccttact tctttctctg
     2101 actgagaatc tgatggatca cacagtaaca cctcaggttt cctcgtcatc catgatcaca
     2161 ccccggtgga tcattccaca gaattctacc atctccaatg ggctcgcagg atatggggta
     2221 tctttgacag ggacagaagg atgtaatcag aaagatggat tctcgctgat ttccccccca
     2281 gcaccattct tggtagatgc tgtgaccagc tctgcccctc ctctgcctgg agactcagcc
     2341 ttgaagcaga agtgcttgct gactactgag ctctgagggc tgctgttccc tacctgtact
     2401 gggaatgccc cgcaccatcc ccggtcaacc ctggggccag ctgatcagct cctttacttg
     2461 gggaaagcct tctaccagga tttgacttta actccatgaa gagagtagct acattctccg
     2521 tccaactgga agtctacccc atatcactgc ttaatgaaga tacctcctcc tgtaactgta
     2581 tctgcatcgc caagtcctga agacatgaag ggaagtttcc tgcaaactgt tggctccacc
     2641 tagcggttgc aactgtttat agcttagagc aaggcttgct gtccagagcc tttcactgct
     2701 ggtccctgta atgtcaggtg agcacacccg acctgcgacc tgcgtgtctg ctgcaaaagt
     2761 gagtggcact ttcctgtgca ttccctggaa atcagaattg aggaaacaga tgaaaacccc
     2821 atgtcagtag attcaggcca gctcttgcat agttcctagg attcttagag aagctgagaa
     2881 catagagggg tgaagatgtc acccacactt ccacttctga gcagtgtaag ctcagtatgt
     2941 aacccattta tcaaagatac atgttgtctc tgggtaacta cagagaggtc ggtctctggg
     3001 catgtcctcc ttagacccct tttcctgtcg gaagcatctg aatcatcacc tgtctgtaac
     3061 tttgcagcct agaggcagcc ggtgtctact cagacccgag gcctcaacct gaggcctgtg
     3121 ctctcctgag cagtggagaa tgcagcccta ctaggctttc cagttgggaa gggctgtcct
     3181 taggcatagc ctccagttcc ttttgggata cactgaaagg aagagaaaac acctggcaga
     3241 aatagggaat ggcggtgaga gggatgggtc cttgatgagt ataatgaccg aagtcagttt
     3301 acattagggg ttttgtattc attttaaact tttattccct tagcctgtac caaaagaagt
     3361 gatgatttta tagtacccac tcatcatagc agagtgtatg gaggtgtccc tgtcggccca
     3421 gcacagggaa atgacactaa agtagcttta ccttgttgac tgagacctga ggcctcagtt
     3481 gccatggaga tgagggtgat gtgcagacgt tggtgatgcc gatagtgttg ccttgttacc
     3541 acacactgat gctaagctgt aacaaccccg ggtggggggg gtggtttgct cagctctgcc
     3601 cagcatgtgc tgtgtgtact tgagtactca tccttacttc tcagttaaga caacacccag
     3661 ctctgcggtc tttaaggagc tataatttga actaccctgg cttccttgtg acatagtata
     3721 tgcttaggca aacactggtg tcttgattgg taagctcaga gggttcagtt tcacaatgtc
     3781 caggagagct ggacagttta gaaaccactt ttgctaaacg gtttgctggc tgtctcccct
     3841 tagccaatat agtgtagctt gccagtcctc agtgataaga catttcttag agtatggcgc
     3901 ctagtactgg taatgtgacc caggacacac tggtttggct atcagattcc tattgtctgg
     3961 aagtcctggg tagcccacag ggctagctgt tctactaaca caaagctaag acacagtgac
     4021 ttagaggtcc taagtgtcct gttctgttta ggaacaagca ctgtcccttc aagattgagt
     4081 cgctgaaagt acccatgaca tttttgtctg caggtacatg agttcttgct agtgagaatg
     4141 tttgttacgg acttggttag gattcactta aatctccagt aaaaagaagt cctatgtgct
     4201 actgtcgagt cgtaagctta cccgttacta cttgagtgac caatctgccc tgacagatta
     4261 aatgtttcct gtgctgttac agtgtgcagg actctgctcc tttgaaaatg gtagtgctaa
     4321 tgagacaggc ctgagggcac cagtggacag taggagtggg gcaagtgcat gaggcagtga
     4381 ggatgctaag tgaggctgga ggtgtcagct aggtaaaaag gcaactggct gtatgagctg
     4441 aatcaggaag atgggcagcc gccggccatg tgggtttatg tcacaatgga gatagggcca
     4501 aaaggctgtc ctgcatgtct agggagggag ggaaggaggg gtgtggacaa ggttcatatt
     4561 gtattaggga cttggcattg cagtttccag taagatatga aggttcagtt agcacacaga
     4621 aaggagtctg tacatgtgag ggaaggatct ggattctgac agcttctggg tagcaactct
     4681 ttccacacag gcagggctcc tggttacatt cctgttcctc aggatggtga acagcaacaa
     4741 gcacacaggc tccttggcat tttaccttgc tttgagagac atacatgcct tacagtcctg
     4801 ctcactgtcc ctaggccctt gctttgcaca ggttccactc tcctgggcat gcctgggacg
     4861 agatctctgg gctattacta ggatctcctg cttgtttttc tcagttctgg ctaaagcttg
     4921 gacctcgctt ctcttaactg agccccagaa aactgctgtc ccttgctaga ttgttta
//
