LOCUS       XM_039082697            3689 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus eomesodermin (Eomes), transcript
            variant X1, mRNA.
ACCESSION   XM_039082697
VERSION     XM_039082697.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 19, 2024 this sequence was replaced by
            NM_001427393.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3689
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3689
                     /gene="Eomes"
                     /note="eomesodermin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 5 ESTs, 5
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:316052"
                     /db_xref="RGD:1359706"
     CDS             438..2564
                     /gene="Eomes"
                     /codon_start=1
                     /product="eomesodermin homolog isoform X1"
                     /protein_id="XP_038938625.1"
                     /db_xref="GeneID:316052"
                     /db_xref="RGD:1359706"
                     /translation="MQLGEQLLVSSVNLPGAHFYSLESARGGGGGGGGGGGGGGGGSA
                     SLLPGAAPSPQRLDLDKASKKFPGSLPCQAGSAEPAGAGAGAPAAMLSDADAGDTFGS
                     ASAVAKPGPPDGRKGSPCAEEELPSAATAAATARYSMDSLSSERYYLPSPGPQGSELA
                     APCSLFQYPAAAGAAHGSVYPASNGARYPYGSMLPPGGFPAAVCPPARSQFGPATGSG
                     SGAGSSGGGAGGPGGYPYGQGSPLYGPYAGTSAAGSCGGLGGLGVPGSGFRAHVYLCN
                     RPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNPTAHYNVFVEVVLADPNHWRFQG
                     GKWVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKLTNNKGANNNNTQMIV
                     LQSLHKYQPRLHIVEVTEDGVEDLNEPSKTQTFTFSETQFIAVTAYQNTDITQLKIDH
                     NPFAKGFRDNYDSMYTASENDRLTPSPTDSPRSHQIVPGGRYGVQNFFPEPFVNTLPQ
                     ARYYNGERTVPQTNGLLSPQQSEEVANPPQRWLVTPVQQPVTNKLDIGSYESEYSSST
                     LLPYGIKSLPLQTSHALGYYPDPTFPAMAGWGGRGAYQRKMAAGLPWTSRMSPPVFPE
                     DQLAKEKVKEEISSSWVETPPSIKSLDSNDSGVYNSACKRKRLSPTTSSNGNSPPIKC
                     EDINTEEYSKDTSKGMGAYYAFYTTP"
ORIGIN      
        1 agtaggccta gggattggta gagccagccg agaggaaaaa gctggttgct aaactcagag
       61 ctaagtcctc ttcttcctag gtgtcagtgt aggggtcctg agagattaga caaggaagga
      121 aaaaaggaag gaaggaggga aggaaggaag gaaggaaaga aggaaggaag aaaggagaca
      181 cctacaaccc cgggtttgtt cctttgagga agaaaaggga cacctacaac cccgggtttg
      241 ttcccttgcg gaaaggactc tggattgggg cgcgcgctga agctgccccg caggtccgca
      301 ggtgggtagc tcaggcgagg gaggaaaggg acattacctt accctcggaa gagggcgctg
      361 gctcccccag ccggccttta taaccaggcc gcgggaggcg aggaggcagc cggctgccgt
      421 ctgcgattcg ctaaagcatg cagttgggag agcagctact ggtgagctcc gtgaacctgc
      481 cgggcgcgca cttctactcg ctggagagtg ctcgcggagg aggaggaggc ggaggagggg
      541 gagggggagg tggaggtgga gggagcgcta gcctcctccc cggtgctgcc ccctcgcccc
      601 agaggctgga cttagacaaa gcgtccaaga agtttccggg cagtctcccg tgccaggcgg
      661 ggagcgcaga acccgcaggc gccggagcgg gggcccccgc ggccatgctc agtgacgcgg
      721 acgccgggga caccttcggc agcgcctcgg ctgtggccaa gcccgggccc ccggacggcc
      781 gcaagggctc cccgtgcgcg gaagaggagc tgccctccgc tgccaccgcc gcggccacgg
      841 cgcgctactc catggacagc ctgagctcgg agcgctacta cctcccgtcg ccgggaccgc
      901 agggctccga gctcgccgcg ccctgctcgc tcttccagta cccggcggcg gccggagcgg
      961 cccacggatc ggtgtacccc gcgtccaatg gtgcgcgcta cccctacggc tccatgctgc
     1021 cccccggtgg attccccgcc gccgtgtgcc cgcccgcgag gtcgcagttc ggccctgcta
     1081 cgggctccgg gagcggcgcc ggtagcagcg gcggtggggc cggcggtcct ggaggctatc
     1141 cctacggcca gggctctccg ctctacgggc catacgccgg aacctcagca gccgggtctt
     1201 gcggaggact ggggggccta ggggtgcctg gctccggctt ccgcgcccat gtctacctgt
     1261 gcaaccggcc cctatggctc aaattccatc ggcaccaaac tgagatgatc atcaccaaac
     1321 agggcaggcg catgtttcct ttcctgagct tcaacataaa tggactcaat cccaccgccc
     1381 actacaatgt gttcgtggaa gtggttctgg cggaccctaa ccactggcgc ttccaagggg
     1441 gaaagtgggt gacgtgcggc aaagcggaca ataacatgca gggcaataag atgtatgttc
     1501 acccagaatc tcccaacacc ggctcccact ggatgaggca ggagatttcc tttgggaagt
     1561 tgaaacttac caacaacaaa ggcgctaaca acaacaacac gcagatgata gtgttgcagt
     1621 ctttgcacaa ataccaacct cgactgcaca tcgtggaagt caccgaggat ggtgtggagg
     1681 acttgaatga gccttccaag acccagacct tcaccttctc agagacgcag ttcatcgccg
     1741 tgactgccta ccaaaacaca gatattaccc agctaaagat cgaccataac ccttttgcca
     1801 aaggcttccg ggacaactac gattccatgt acaccgcctc agaaaatgac aggttaactc
     1861 catctcccac ggattctcct agatcccacc agattgtccc tggaggtcgg tacggcgttc
     1921 aaaacttctt cccggagccc tttgtcaaca ctttgcctca agcccgatat tataatggtg
     1981 agagaaccgt gccacagacc aacggcctcc tctcacccca acagagcgaa gaggtggcca
     2041 accctcccca gcggtggctt gtcactcctg tccagcaacc tgtgaccaac aagctagaca
     2101 tcggttccta tgaatctgag tattcatcca gtacattgct cccatatggt attaagtcct
     2161 tgcccctcca gacatcccac gccctggggt attaccctga cccgaccttc cctgcgatgg
     2221 cagggtgggg aggccgaggc gcttatcaga ggaagatggc agccggacta ccatggacat
     2281 ccaggatgag cccacctgtg ttcccagaag atcagcttgc caaggagaaa gtcaaagaag
     2341 agattagctc ctcctgggta gagactcccc cctccatcaa gtctctagac tccaacgact
     2401 ccggggtgta caacagcgct tgcaagagaa aacgcttgtc acctaccacc tccagcaatg
     2461 gaaattcacc ccccataaag tgcgaggaca ttaacactga ggagtacagt aaagacacct
     2521 caaaaggcat gggggcatac tacgccttct acacgactcc ctaaagagtt gttttaacct
     2581 ctaacgtctt tccagatgga cctggtggtg tttcgttgtt ttctttgcct aggttaccaa
     2641 aaagactctt gccttccacc ttccaacgta tcctgttttg tgcaattctc tgagagaggg
     2701 tgccaaagct taaccacggg ccgcaggtaa cgcactgaag cagacctagc cgttgtgttt
     2761 ttgtttttgt ttttctttgt aaaaataaag ctaatggagg actctcggga gtattttaaa
     2821 attcaaaggt cgttcaaggt gctggattca ttgacaggaa acaagaaaca ttcagagaaa
     2881 gcaggctatg aagagagagc gccgggtgct atgaattcaa tgaatttcaa aaacaagaaa
     2941 acatggagga aaaaaaaaaa aacgttggct ctcatttcta ctcctcctaa atcttttaag
     3001 aaaacagcag cccagagggt taaaatattt ttgcttcagg aagagaaggg ttggctcttg
     3061 agttccaaca gtggactctt cacagacatc ttcagctgag gggctaaagg ggtggagcct
     3121 gagagtcgaa gggggaggag ccccagtgtt gaagcggcta gcctgccatt ccttgccgaa
     3181 ttttggaata aaccatttgt gattgggctg gctctgtgtg gatgggatga ccgccagaaa
     3241 gccgggaggg tcagaaagaa agggagaaat taagtataca attgtatgtc tagacacctt
     3301 agaacaatct ggaatatatt gtacaagttc aactgcctag gtatcagata aaaataaggt
     3361 aaaattggtg ctttggcgtt gtagagaact ttcagaaaca caactgcagt gttaagaggg
     3421 ggaatccata tcttggagat attctgtcta cttagtactc agctgcctcc cgtactcact
     3481 tctaccacgc ttaagggata aaaacaaaaa aacaaaaaaa ccccagctca atcctctttc
     3541 cttggtcatc cccacttccc tcttcagtaa atgtgaaaaa aaagttgcag tatgacgtca
     3601 cagttcctat aggctttcta gagattctga atttttatgt acagtcgtaa gtcattttta
     3661 ataaatgtcg ttcaataagg gaacgggta
//
