LOCUS       XM_039094263            4724 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus endosomal transmembrane epsin
            interactor 2 (Entrep2), transcript variant X1, mRNA.
ACCESSION   XM_039094263
VERSION     XM_039094263.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094263.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4724
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4724
                     /gene="Entrep2"
                     /note="endosomal transmembrane epsin interactor 2; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 10 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 17 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:680344"
                     /db_xref="RGD:1592985"
     CDS             138..1688
                     /gene="Entrep2"
                     /codon_start=1
                     /product="protein ENTREP2 isoform X1"
                     /protein_id="XP_038950191.1"
                     /db_xref="GeneID:680344"
                     /db_xref="RGD:1592985"
                     /translation="MPPAGGPRTPRPHALPRSLSRLRECPGRSRIVLALGATQMALGC
                     LIVAVSFAALALTTSARVRHSCPFWAGFSVLLSGLIGVVSWKRPLSLVITFFMLLSAV
                     CVMLNLAGSILSCQNAQLVSSLEGCQLIKFDSVEVCVCCELQHHSSGCSNLGETLKLN
                     PLQENCNAVRLTLKDLLFSVCALNVLSTIVCALATAMCCMQMVSADVLQMFFPQRSHS
                     ANAACVTPHGTILHQTLDFDEFIAPLPPPPYYPPEYTCTPTAEAHRGLHLDFASSPFS
                     TLYDVTINSPGLLYPAELPPPYEAVVGQTPASQVASADHQVVDSSSGDPNTAADFSTP
                     GMPASSTSLPTSEGATSLGPSHPSPDGTLDTPPPLLPAPVPHHMSPEATSLSTQVQPS
                     PGRVARSASDPTSCTSSEAVSISRPAMGACQPQLSSTGDSDAWKTNQRAKPETLQTVS
                     KERPHSLVESKAYADTRVLVAKFLEHTHCSLPTEVRHVVGTIRSTATSEEPRVEEAIF
                     GAGVLDQL"
ORIGIN      
        1 cgcccggccc gagccgctcg ctccggtcgc gcgccgcagc ctctgctgcc cgcggggagg
       61 cggtcccggc agccggcgca acttgcctcg gcgcctcggt gagaggagcg cagagcggag
      121 agagcttgcg ggacgcgatg cctccggccg gcggcccccg cacaccgcgc ccgcacgcgc
      181 tgccccgcag cctgtcccgc ctgcgcgagt gcccgggccg ttcccgcatc gtgctggctc
      241 tcggggccac gcagatggcg ctcggatgcc tcatcgtggc cgtgagcttc gcggcgctgg
      301 ctctcaccac ctccgcccgc gtgcgccact cctgcccttt ctgggccggc ttctcggtgc
      361 tgctgtctgg actcattggt gttgtctcct ggaagaggcc tctctcgctt gtgatcacct
      421 tcttcatgct gctctctgca gtgtgtgtga tgctcaactt ggccggctct atcctctcct
      481 gccagaatgc ccagcttgtc agctccctcg aaggctgcca gttgatcaag tttgacagcg
      541 tggaggtgtg tgtgtgctgc gagctgcaac accactcgtc cggatgcagc aacctcgggg
      601 agacactgaa gctgaaccca ctgcaggaga actgcaatgc tgtgcggctg accttgaagg
      661 acctcctctt cagtgtctgt gcccttaatg tcctctccac cattgtgtgc gccttggcca
      721 cagccatgtg ttgcatgcag atggtctctg ctgatgtcct gcagatgttc ttccctcaga
      781 ggtctcactc tgccaacgct gcctgtgtga ctccccatgg caccattctc caccagaccc
      841 tggacttcga cgagtttatt gcccccctcc cgcccccgcc ctactaccct ccagagtaca
      901 cctgcacacc cacagcggag gctcacaggg ggctccacct ggacttcgct tcctcaccct
      961 tcagcactct gtatgacgtc accatcaaca gtcctggcct gctgtaccct gctgagctgc
     1021 ccccaccata tgaggccgtg gtgggtcaga ctcctgccag ccaggttgca agtgccgatc
     1081 accaggtggt tgactccagt tctggggacc caaacactgc tgcggacttc agcaccccag
     1141 gtatgcctgc cagtagcacg agtctcccaa catcagaggg ggccacctca ctgggtccaa
     1201 gccacccatc ccctgatggc actttagaca ccccaccgcc ccttctaccc gctccggtcc
     1261 ctcaccatat gtctccagag gcaacaagct tgagcacaca ggtacaacca agcccagggc
     1321 gtgtggcccg ctcagccagc gaccccacct cctgcacatc cagcgaagca gtctccatat
     1381 cacgcccagc catgggtgcc tgtcagcccc agctctcatc cactggtgac tcagatgcct
     1441 ggaaaacgaa ccaacgggcc aagccagaga ccttacagac cgtctccaaa gagcggccac
     1501 actctttagt ggagagcaag gcctatgcag acaccagggt tctggtggct aagtttttgg
     1561 aacacacaca ctgcagcctc cctacagagg ttcgacatgt ggtgggtacc atacggtcaa
     1621 cggccacttc agaggagccc agggtggagg aggccatctt tggtgctggc gtcctggacc
     1681 agctatgaag cagctacagg cctggatgtg gacactgatg ggcccagtgc ctgcaaagtg
     1741 tgggtcctgc aagatgtcac catgcttggt agagaaaggc ctttggcctg ctggactgag
     1801 aacatccagg atatccagga ggctcactgg tggaccgggc aaggaactgt tactctttct
     1861 cccatcggtt gtcttcctgg ggactgtttg tcccctgtcc cactaactca gagatgtttc
     1921 tctcctgctc ttagtgagct gtggtggctt caggggtata gcacctcttg aactgaagac
     1981 tgtgatggga ataccattcc ggggacaggt gacacttgtg ggacataaag acactgcctc
     2041 tgccccaagt caaggccttt aacacacgat gcccctctgg acctggtttg gttcagtgtt
     2101 aaaagaatat agggtagcag cggccgtgga gccatgtggc tggtatcact ctgcaatgag
     2161 tcctttatca gattcagacc cattacttcc tctcaaaggc aataggtgat gttcacaccg
     2221 ccccggacca tcttttcacc cactgggctg tcatgcaaac aaatctacaa tgaaagcttt
     2281 tctacataac tcttgggaag caagtacgtg tcacaagggc ttgaaatgcc cacctcctct
     2341 gagtcctggg cctccccact agacctctgt ctgtgggttg ctatccccac ctctccctag
     2401 gcccctcccc cacagcctcc catcctttaa ccacagcaaa tacttgttac ttgtgtctta
     2461 acagtaagct tctctcctca tccttggagg acttcccctc gtatctgacc tcactcacct
     2521 aattgtgctg ggtaggtcac agtctggggc tagggaagct accatctgct atatgtgcac
     2581 ccccggctaa ggcaaacctc tctctcatga cctagagttg tccttttgcg gctcaggtgg
     2641 cagcaggcac acctgcagtg aaggatacaa gtggtcagtg tcttatttct gggagaatgc
     2701 cagtggtaga catccagaag caaggcaaac ccagcttagg cacaaccggg tggcttgggg
     2761 caaaatggcc atcccagact ttcctggctg tttcagacct cattttcgag caagatcaac
     2821 agcaaccact tctcaacaat gggtctggag cagcactgcc tacaagaact tcttgtacaa
     2881 aacagaaatg cccacatctg tttcatcccc agcagcagtt ataatcatgg gaggtccctg
     2941 caactgtcgt gggcctgtga gcctcactct aggcacagaa gccctaagtc tgtgagtagt
     3001 gccagggtgg accagagggt acctgccatt gttcggtgcc cagctggtag gtttaggcag
     3061 ctcttctctc cattttgcca gcccttgcct gaccttctac taccctgatc cagtccccaa
     3121 attccctgta gccaatatgt tgaaggcctc tgtgtgttcg gaagcaatgg aggttcaggc
     3181 cacacacggc ctctgaaaac ccctagcggc gatcagctgt ccgtgcccga tggctttacc
     3241 attgccatag gctgttgcct tcctgaggtt agagagctgg aaaatataaa tcaggcatct
     3301 gacagcaccc ttgcctctcc cacaggagaa ttaatagaga tggaattttt gagcacttta
     3361 ttcagaccgt aaaatcctct aaatttccct tgagtgaggg ctttgaaaat cccccccccc
     3421 cagagcacat cccttacagg tggaatggct cgccccgagc ttcgcagcac gaaatacttt
     3481 catgcctggt tgctaggcat tttcaccacc tcaaggatgg ggtgaagtga ggtagtggca
     3541 gggtagcacc tgattggagg atccatgaag cagtgcttaa acatttgtgg atctcagaac
     3601 aatctatgac ccaagagaag ccaggaccaa cccccaaccc aactgaccca ggctctgagg
     3661 tattttcata gtgtggccag ggtgaccatt ttctggattg cacacagggc actgtggcct
     3721 tcgtgctgcc tctttactgc aggccctcaa ctagctatca tgtggcactt ctgactcaag
     3781 ccgcacctct cctcaggtgc aggctacccc tactacccgg aagccctgag tcccagacat
     3841 tctcaaggaa gtggtgtaca cacaccgttc taactaggct gtgagatggc tcccctaaca
     3901 gacgtatatg ctggataaag aaactacagc acttcatgct atagggtggg tgttccatga
     3961 cacgtcaatc ttggttcacc ttctcagagc cctgggtgga ccatgaaggc attaaaatgc
     4021 ccaagatcca ggcttccagg gagtcagagg cactgggaac agccaccaga caatggtctt
     4081 gcagtttgac tcgtctctcc caggtcccct aaccctgtct cagtggtgag cgagtattag
     4141 gaacccaggc aggtatgtgg gtcccttgtt gaagcaaagg ctgtccccct tcccactgct
     4201 tgcacatgtt tccatcttgg aaggtctgtc cttcttcttt tgctggtatc tgaactgggc
     4261 ccactggtaa tcatttgggg gaagacgctc tcatgctcag tttgccaggt cgtgggcccc
     4321 cagccaaaaa acaaaaaaag agtatcttct aggacatcct tcaactctgc ttggggggca
     4381 ggaagatgct gatgtgaacc cagtgtgggc agcaactcta ctgtgaggaa ggctggaggc
     4441 ttcacaacga ggacttaggt ctccttccca gggaggcccc gataaaatcc caaatgcttg
     4501 caaccagccc tggagtggga agctcactgt ggatcttctc cccaccccca acccccactc
     4561 agctgtgtca gtccacagct gctgctgaag cagagtttat aggaaattgt tttcaggcca
     4621 ccagagacct gtttgtacaa catgaaaggt tgtatttatt taatgtacct caaggtgttt
     4681 taataatgat cagtgtttta ataaaaagta tttctggtct ctga
//
