LOCUS       NM_001400818            2512 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus endosomal transmembrane epsin interactor 1
            (Entrep1), mRNA.
ACCESSION   NM_001400818 XM_219909
VERSION     NM_001400818.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2512)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jan 27, 2022 this sequence version replaced XM_219909.10.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166504.1, SRR22582424.670753.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840108,
                                           SAMN12840110 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-469               JAXUCZ010000001.1  231072342-231072810 c
            470-526             JAXUCZ010000001.1  231062665-231062721 c
            527-637             JAXUCZ010000001.1  231035345-231035455 c
            638-766             JAXUCZ010000001.1  231032119-231032247 c
            767-874             JAXUCZ010000001.1  231030206-231030313 c
            875-1008            JAXUCZ010000001.1  231029928-231030061 c
            1009-1138           JAXUCZ010000001.1  231025924-231026053 c
            1139-1217           JAXUCZ010000001.1  231025724-231025802 c
            1218-1370           JAXUCZ010000001.1  231024190-231024342 c
            1371-1663           JAXUCZ010000001.1  231021568-231021860 c
            1664-2512           JAXUCZ010000001.1  231018987-231019835 c
FEATURES             Location/Qualifiers
     source          1..2512
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q51"
     gene            1..2512
                     /gene="Entrep1"
                     /gene_synonym="Fam189a2; RGD1307524"
                     /note="endosomal transmembrane epsin interactor 1"
                     /db_xref="GeneID:309415"
                     /db_xref="RGD:1307524"
     exon            1..469
                     /gene="Entrep1"
                     /gene_synonym="Fam189a2; RGD1307524"
                     /inference="alignment:Splign:2.1.0"
     CDS             83..1870
                     /gene="Entrep1"
                     /gene_synonym="Fam189a2; RGD1307524"
                     /note="protein FAM189A2; family with sequence similarity
                     189, member A2"
                     /codon_start=1
                     /product="endosomal transmembrane epsin interactor 1"
                     /protein_id="NP_001387747.1"
                     /db_xref="GeneID:309415"
                     /db_xref="RGD:1307524"
                     /translation="MSLPVVLPGSCCPVAGLSGGPQAGGPGAAAAAAQEPPLPPLRPR
                     WPRGALQPPARPRCAPAAVLAPPPALASRRPAAPGSALLPARPLLSLGLLQLILGCCM
                     VALSFGALSLSSSPQVKNSCPFWAGSSVILSGIIGLTTWKRPMILLVNLFVLLSVVCI
                     LLNLAGFILGCQGAQFVSSVPRCDLVDLGEGKICFCCEEFQPAKCTDKENALKLFPVQ
                     PCSAVHLLLKKVLFALCALNALTTTVCLVAAALRYLQIFASRRPCIDESQISAEEVEE
                     PGRIPDPDDFVPPVPPPSYFATFYSCTPRMNRRMVGSDVIPLPHIYGARIKGVEVFCP
                     LDPPPPYEAVVSQADQEQESSFQMPEGPETAASPVEPVCTQITRGGVLTNTPAEENTS
                     GSTPLSNVVQPPRSRRALPLLRTRSKSDPMLHHSEERATPVLSCEAATQTERRLDLAT
                     VTLRRGARPRASRCRPHSLIDYRSYIDTKLLVARFLEQSSCSMTPDIHELVENIKSVL
                     KSDEGHMEEAITSASFLEQIMAPAQPSTSQAQMLTSRRQPGLLHLRSCGDLSTFSLAG
                     RPRAERRLQQRAEAERPHSLIGVIRETVL"
     exon            470..526
                     /gene="Entrep1"
                     /gene_synonym="Fam189a2; RGD1307524"
                     /inference="alignment:Splign:2.1.0"
     exon            527..637
                     /gene="Entrep1"
                     /gene_synonym="Fam189a2; RGD1307524"
                     /inference="alignment:Splign:2.1.0"
     exon            638..766
                     /gene="Entrep1"
                     /gene_synonym="Fam189a2; RGD1307524"
                     /inference="alignment:Splign:2.1.0"
     exon            767..874
                     /gene="Entrep1"
                     /gene_synonym="Fam189a2; RGD1307524"
                     /inference="alignment:Splign:2.1.0"
     exon            875..1008
                     /gene="Entrep1"
                     /gene_synonym="Fam189a2; RGD1307524"
                     /inference="alignment:Splign:2.1.0"
     exon            1009..1138
                     /gene="Entrep1"
                     /gene_synonym="Fam189a2; RGD1307524"
                     /inference="alignment:Splign:2.1.0"
     exon            1139..1217
                     /gene="Entrep1"
                     /gene_synonym="Fam189a2; RGD1307524"
                     /inference="alignment:Splign:2.1.0"
     exon            1218..1370
                     /gene="Entrep1"
                     /gene_synonym="Fam189a2; RGD1307524"
                     /inference="alignment:Splign:2.1.0"
     exon            1371..1663
                     /gene="Entrep1"
                     /gene_synonym="Fam189a2; RGD1307524"
                     /inference="alignment:Splign:2.1.0"
     exon            1664..2512
                     /gene="Entrep1"
                     /gene_synonym="Fam189a2; RGD1307524"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtccgtcct gcgcggcgcc ggcgcgggtg cccggtgcgc ggcgccctcc gctccgctgc
       61 gccgcccgcc cgccgcgcgc ccatgtctct gccggtggtg ctcccgggct cctgctgccc
      121 ggtggcgggg ctgtcgggcg gaccccaggc tgggggtcct ggcgccgccg ccgccgccgc
      181 tcaggagccg ccgctgcccc cactgcggcc gcgctggccc cggggcgctc tccagcctcc
      241 agcccgtccc cgctgcgccc ccgccgccgt gctggccccg ccgcccgcgc tcgcgtcccg
      301 ccgccccgcc gcgccgggct ccgcgctgct accggcgcgc ccgctgctgt cgctcgggct
      361 cctgcagctg atcctgggct gctgcatggt ggcgctcagc ttcggggcgc tgtcgctgag
      421 tagctcgccg caggtgaaga actcgtgccc attctgggca ggctcctcgg tgatactctc
      481 tggaatcatt ggactgacaa cttggaaaag gcccatgata ctgctggtaa atctttttgt
      541 gctgctctcc gtggtttgca tcctcttaaa tctcgcaggg ttcatcctag gctgtcaagg
      601 agcccagttt gtgtccagcg tgcccaggtg tgatctggtg gacttaggtg aaggcaagat
      661 ctgcttctgt tgtgaagaat ttcaaccagc caaatgcaca gacaaagaaa atgccttgaa
      721 actcttcccg gtccagcctt gtagcgctgt acacctcctg cttaagaaag tcctgtttgc
      781 cctgtgtgcc ttgaatgccc tgaccaccac ggtgtgtttg gtggctgctg ccctgcgcta
      841 cctccagatc ttcgccagca gaaggccgtg cattgacgaa tcccagatct ctgcagagga
      901 agtggaagag cccgggcgga ttccggaccc agatgacttt gtgccgccag tgcctcctcc
      961 ttcttacttt gccacgtttt actcctgcac acctcggatg aaccgcagga tggttggttc
     1021 tgatgtcatc ccactgcccc atatctatgg agcacgaatc aagggtgtgg aagtgttctg
     1081 tcctctggac cccccacctc catatgaagc tgtagtgagc caggctgacc aggaacagga
     1141 gtcttcattc caaatgccag aaggaccaga aactgcggcg agcccagtgg agccagtctg
     1201 cacacagata actcgaggtg gggtccttac taacacgcct gctgaagaaa acacgtctgg
     1261 atcaactcct ctttccaacg tggttcagcc tccaagaagc cggagagctc tcccacttct
     1321 gaggacaaga tcaaagagcg accctatgct tcaccattct gaggagagag ccaccccagt
     1381 gctcagctgc gaagctgcga cacagacgga aaggaggcta gatctggcta cagtgactct
     1441 gaggagaggc gcgagaccac gggcatcaag atgcaggccc cactctctga tagattacag
     1501 gtcttacata gacacgaagt tgctggtggc caggttcctg gagcagtcct cctgcagtat
     1561 gactccagac atccatgaac ttgtagaaaa cataaagtct gtcctgaagt ctgacgaggg
     1621 acacatggaa gaagccatca cgagtgccag tttcctagag cagataatgg ccccagccca
     1681 gcccagcact tcccaggctc agatgctgac ctcgaggaga cagcctggcc tgctgcatct
     1741 gcgcagctgt ggagacctga gcaccttttc cctggcagga aggcccagag cagagaggag
     1801 gctccagcag cgagctgagg ctgagcggcc acacagcctc attggtgtca ttcgagagac
     1861 tgtcctgtga actgagtgac atggaaggat gtctgtccct cctcagtgcc gtttactgtc
     1921 tgggagctgg gggcaccgcc catcctggaa cccctcaaca ggggtcctgg gttcgacact
     1981 tatccctgct ctctggctct cattttgctg acgagggcac tcaggtgaac tcgggtgaag
     2041 taagttcttc ctggcccttc caggctgcgt gttcccggct ggaggagaag gcagggagag
     2101 ctcctttgtc tgctgaatct cacagtatcc ccaaggggtg agcagcaaac aggctcccag
     2161 tctttgcctg cctcacccct tatgactctt tgttgttgcc aagttcattc cctcgctgta
     2221 aggggagagc tgctgggcta tttatagctg cctgcggcct ctggctgctc agtgagagga
     2281 gctggcagga gacatgatgg ttaacaccaa gcgactccag tcctccagcc tcctttaggc
     2341 taccttctat cccatcctct ttagggaaag cgggagacca gctaagcggt gttttgtttt
     2401 gttttatttt tttaatgaag gacgttaagg gggagcacta tagttgattc cttcatgctt
     2461 gcaaactaga acacctaaga cagaacagag aataaagcgc tgactttgga aa
//
