LOCUS       NM_001013135            2274 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus endosome associated trafficking regulator 1
            (Entr1), mRNA.
ACCESSION   NM_001013135 XM_224691
VERSION     NM_001013135.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2274)
  AUTHORS   Yu,F., Sharma,S., Skowronek,A. and Erdmann,K.S.
  TITLE     The serologically defined colon cancer antigen-3 (SDCCAG3) is
            involved in the regulation of ciliogenesis
  JOURNAL   Sci Rep 6, 35399 (2016)
   PUBMED   27767179
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2274)
  AUTHORS   McGough,I.J., Steinberg,F., Gallon,M., Yatsu,A., Ohbayashi,N.,
            Heesom,K.J., Fukuda,M. and Cullen,P.J.
  TITLE     Identification of molecular heterogeneity in
            SNX27-retromer-mediated endosome-to-plasma-membrane recycling
  JOURNAL   J Cell Sci 127 (Pt 22), 4940-4953 (2014)
   PUBMED   25278552
REFERENCE   3  (bases 1 to 2274)
  AUTHORS   Hagemann,N., Ackermann,N., Christmann,J., Brier,S., Yu,F. and
            Erdmann,K.S.
  TITLE     The serologically defined colon cancer antigen-3 interacts with the
            protein tyrosine phosphatase PTPN13 and is involved in the
            regulation of cytokinesis
  JOURNAL   Oncogene 32 (39), 4602-4613 (2013)
   PUBMED   23108400
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Mar 12, 2011 this sequence version replaced NM_001013135.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.2923610.1,
                                           SRR26643286.9555.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-168               JAXUCZ010000003.1  29605613-29605780   c
            169-318             JAXUCZ010000003.1  29605380-29605529   c
            319-387             JAXUCZ010000003.1  29604950-29605018   c
            388-503             JAXUCZ010000003.1  29603989-29604104   c
            504-911             JAXUCZ010000003.1  29603345-29603752   c
            912-985             JAXUCZ010000003.1  29602477-29602550   c
            986-1097            JAXUCZ010000003.1  29601994-29602105   c
            1098-1160           JAXUCZ010000003.1  29601581-29601643   c
            1161-1300           JAXUCZ010000003.1  29601168-29601307   c
            1301-2274           JAXUCZ010000003.1  29599059-29600032   c
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p13"
     gene            1..2274
                     /gene="Entr1"
                     /gene_synonym="Sdccag3"
                     /note="endosome associated trafficking regulator 1"
                     /db_xref="GeneID:306322"
                     /db_xref="RGD:1305930"
     exon            1..168
                     /gene="Entr1"
                     /gene_synonym="Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..1397
                     /gene="Entr1"
                     /gene_synonym="Sdccag3"
                     /note="serologically defined colon cancer antigen 3"
                     /codon_start=1
                     /product="endosome-associated-trafficking regulator 1"
                     /protein_id="NP_001013153.2"
                     /db_xref="GeneID:306322"
                     /db_xref="RGD:1305930"
                     /translation="MSGYARRQGAPPLSRTRSLVVPDAPAFYERRSCLPQLDCERPHG
                     GDLHPQFFGFRPTFMCYVPSPVLASVGDTDFGYGKGKCTKQGPSGAHETRFGGDKLED
                     LEEANPFSFKEFLKTKNLSLSKEDTATSRIYPKEASRHPLGLDHNSPVSQPMGYGLEY
                     QQPFFEDPTRASNLEEDEEDGWSRAYLPSAVEQTHSTRATQNSSPCGTYLSFFSNASE
                     LAGPESLPPWTLSDTDSRLSPASPAGNPNVDFAAHEESLGDRHLRTLQLSYEALKDEN
                     SKLRRKLSEVQSFSETQTEMVRTLERKLEAKMIKEESDFHDLESVVQQVEQNLELMTK
                     RAVKAENHVMKLKQEVNLLQAQLSNFKRENEALRSGQGASLTVVKQNTDVALQNLHVV
                     MNSAHASIKQLVSGAETLNLVAEILKSIDRITEVKDEADS"
     exon            169..318
                     /gene="Entr1"
                     /gene_synonym="Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            319..387
                     /gene="Entr1"
                     /gene_synonym="Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            388..503
                     /gene="Entr1"
                     /gene_synonym="Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            504..911
                     /gene="Entr1"
                     /gene_synonym="Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            912..985
                     /gene="Entr1"
                     /gene_synonym="Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            986..1097
                     /gene="Entr1"
                     /gene_synonym="Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            1098..1160
                     /gene="Entr1"
                     /gene_synonym="Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            1161..1300
                     /gene="Entr1"
                     /gene_synonym="Sdccag3"
                     /inference="alignment:Splign:2.1.0"
     exon            1301..2274
                     /gene="Entr1"
                     /gene_synonym="Sdccag3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgttcggc gcaggcttcc ggccggccgc gccggatgag gcaggggctg gcgacggcgt
       61 tgtgggccat ggggccgcgg ccgggttagg gcgcggcgat gtcgggctac gcgcggcggc
      121 agggcgcgcc cccactatcg cggacgcgga gcctcgtagt tcccgacgct cctgcgttct
      181 atgagcgccg gtcttgtctc ccccagctag actgtgaacg cccccatggc ggggacctgc
      241 acccccagtt cttcggcttt cggccgacgt ttatgtgcta tgtgcccagc ccggtgctgg
      301 cttcggtagg agacacagat tttggctatg gaaaggggaa atgtactaaa caaggcccgt
      361 cgggagccca tgagacgcgc tttggaggtg acaaacttga agaccttgaa gaagccaatc
      421 cattctcctt caaagagttt ttgaaaacca agaacctcag cctgtcaaaa gaagacacag
      481 ccaccagtcg aatttacccg aaggaggcct cgaggcaccc actgggacta gaccacaact
      541 cccctgtctc ccagcccatg ggatatggcc tggaatatca gcagccattt tttgaagacc
      601 caacaagagc cagcaaccta gaggaggatg aagaggacgg gtggagcaga gcctacctgc
      661 cgtctgccgt ggagcagact cactccacga gagccacgca gaactcatcg ccctgtggca
      721 cctacctttc cttcttttcc aacgcgtcag agctggcagg tcctgagtct ttgcccccat
      781 ggacactgag tgacactgac tccaggctct ccccagcgtc tccagctggg aatcctaatg
      841 tagactttgc agctcatgaa gaatccttag gggacagaca cctgcggacg ctgcagttaa
      901 gttacgaagc actgaaagat gaaaactcta agctcagaag aaagctaagt gaggttcaga
      961 gcttctctga aactcaaaca gaaatggtga ggacgctcga acggaagttg gaggcgaaga
     1021 tgatcaagga agagagtgac ttccatgacc tggagtcagt agtccagcaa gtcgaacaga
     1081 acctcgaact gatgaccaaa cgggctgtaa aagcagaaaa tcatgtcatg aagctgaaac
     1141 aggaagtaaa tttgctccag gcacagctct ccaacttcaa gcgagaaaac gaagcccttc
     1201 ggtcaggcca gggtgccagc cttaccgtgg tgaagcagaa caccgatgtg gccttgcaga
     1261 acctccatgt tgtcatgaac agtgcacacg catctataaa gcagctggtg tctggagcag
     1321 agacactgaa ccttgttgct gaaatcctca agtctatcga cagaattact gaagttaagg
     1381 atgaggcaga ctcttgagaa cacgacctgc cgccgggtcc cggcacctct gcaccgatgg
     1441 caccacacag cttccaactg tgctcctaac taagcagtcc tcaccaaacc atctcacagc
     1501 ctaagcacgt gaccgggcac ctgcagtaca gggctccttt ccaccggttg cacctaacag
     1561 tttacatgaa gtcctttggg gaagtcccac tgtttgatag actcactgat ttactggaag
     1621 acatttttat aaaacccagc aatttttaga aagcactaaa gctgaaacaa cagtttggta
     1681 aaaagctgct tccactgtcc ctcagattta ctataggatg agctcgggct cagggccagt
     1741 tttactaagc agaacactaa gtgagccagt gtggaagcga gcagcctgta caggactctt
     1801 gctgtcactc tgcctcacga acagacgttg acattgtggc cttcacggac ggctcctgct
     1861 gtcagcagcc tcaccgaggc agcaccactc ggtagatgct gctgtcctac caggacccta
     1921 gtaccaaagt cacagactgc attgcagagc gtcacacacg cactactctg ggctaccagc
     1981 ttcgggaagc catttgaggc tgttggtttt gatgagtgtt aatgtgtcag tgcatctttt
     2041 gcatagtgcg gttcagactg gaattagagc acacacctac ctgcctcagg tcagcaccag
     2101 ttctttgggc tggctggctg gttttgaagg acaagcagac aaaagcagca ccctgtgctg
     2161 tgctgagggg tcagggtttg gggaccactt tcctatagat tttttaaatt tccctcttcc
     2221 cctcctgttg agatcaacag ctttcttatc taaataaatc ttgaagatca ttta
//
