LOCUS       XM_575584               1618 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus empty spiracles homeobox 1 (Emx1),
            mRNA.
ACCESSION   XM_575584
VERSION     XM_575584.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 31, 2024 this sequence was replaced by
            NM_001427580.1.
            
            On Jan 21, 2021 this sequence version replaced XM_575584.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1618
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1618
                     /gene="Emx1"
                     /note="empty spiracles homeobox 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 2 ESTs, 6 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     30 samples with support for all annotated introns"
                     /db_xref="GeneID:500235"
                     /db_xref="RGD:1564002"
     CDS             353..1225
                     /gene="Emx1"
                     /codon_start=1
                     /product="homeobox protein EMX1"
                     /protein_id="XP_575584.5"
                     /db_xref="GeneID:500235"
                     /db_xref="RGD:1564002"
                     /translation="MCQAWCTPRTAAAPGHRAFPRAPLPHSSSAAATMFQPATKRGFT
                     IESLVAKDGGTGGSPGSGGAGSHPLAVAASEEPLRPTALNYPHPSAAETAFVSGFPAA
                     AAAGASRSLYGGPELVFPEAMNHPALTVHPAHQLGSSSLQPPHSFFSAQHRDPLHFYP
                     WVLRNRFFGHRFQASEVPQDGLLLHGPFARKPKRIRTAFSPSQLLRLERAFEKNHYVV
                     GAERKQLAGSLSLSETQVKVWFQNRRTKYKRQKLEEEGPESEQKKKGSHHINRWRIAT
                     KQANGEDIDVTSND"
ORIGIN      
        1 ggggagcgcg gggcaggtgc ccgctaactc tctcctcgct gagctgcagc ccaggcttgg
       61 cccagcagag ctaggaggat ctcgggcggt ggtctgtcac agcttgacta gtaagggaga
      121 aagccaggag gaccgcagaa gccgttctca gtagcagagg cagcccgcgc ccgggcgttt
      181 gcagggagct gcctgctggg ccgcggggac cacgctccag gcggtgcgca gtggcccaac
      241 acggtgttag ggctctcgca cgcccctcgc cgccccgctc ctggctggtc cgcaagggcc
      301 cagcgcgggc aggtgggcgg gcgggggagg tgaagggtgc gggcgtgagt gcatgtgcca
      361 ggcttggtgc acaccccgca cggcggcagc gccggggcac cgagcgttcc ccagagcccc
      421 actacctcac tcctcttcgg cggcagcgac catgttccag cccgcgacta agcggggttt
      481 caccatagag tccttggtag ccaaggatgg tggcaccggc gggagtcctg gcagcggggg
      541 cgcgggctcc catcccctgg ctgtggccgc ctcagaagaa ccgctcaggc ccacggcgct
      601 caactaccct caccccagtg cagccgagac ggccttcgtg agtggcttcc ctgccgctgc
      661 agctgcgggc gccagccgct cgctctacgg agggccggag ctggtgttcc cagaggccat
      721 gaaccacccg gctctgacgg tgcacccggc acaccagctg ggctcctcct cgttgcaacc
      781 ccctcactct ttcttcagcg cccagcatcg ggaccctctt cacttctacc cctgggtgct
      841 tcggaatcgc ttctttggtc accgcttcca ggcaagcgaa gttccccagg acgggctgct
      901 tttgcacggg cccttcgcgc gcaagcccaa gcggattcgc acggccttct cgccctcgca
      961 gctgctgcgg ctggagcgag cctttgagaa gaatcactac gtggtgggtg ccgagcggaa
     1021 gcagctggca ggcagcctca gcctctccga gacgcaggtg aaggtgtggt tccagaatcg
     1081 gaggacaaaa tacaaacggc agaagctgga ggaggaaggg ccggagtctg agcagaagaa
     1141 gaagggttcc caccatatca accggtggcg catcgccacg aagcaggcca acggggagga
     1201 cattgatgtc acctctaatg actaggggaa cagtcgagag cccacaaggg cagagcattg
     1261 cttgctgctg gccggggctc caggggccca cgctggactc tggccactcc ttagccaggc
     1321 tgcagggagg tgtcgagtca cggccccaca gggcttggag cctggggcca tcaccgtcag
     1381 agggacaaga aaatgggctg gctgaggcct gggactgctc agccttctgg tggagagcct
     1441 gctgcttggg tggaccgccc atccctgcgg cccccccagc tgctctccgt gtctctgtct
     1501 ttgttctgag acatgtctct tttaatttat tttccaggtc ctgctgtagt tcttagtgat
     1561 cctctcatgt cccccttccc tatgggaaat aataataaaa aaaaatctct ctcttaac
//
