LOCUS       NM_001109901            2440 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus elastin microfibril interfacer 3 (Emilin3), mRNA.
ACCESSION   NM_001109901 XM_001069605 XM_342567
VERSION     NM_001109901.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2440)
  AUTHORS   Doi,M., Nagano,A. and Nakamura,Y.
  TITLE     Molecular cloning and characterization of a novel gene, EMILIN-5,
            and its possible involvement in skeletal development
  JOURNAL   Biochem Biophys Res Commun 313 (4), 888-893 (2004)
   PUBMED   14706625
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Oct 24, 2007 this sequence version replaced NM_001109901.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.16251.1,
                                           SRR26643429.14451.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-309               JAXUCZ010000003.1  169984180-169984488 c
            310-432             JAXUCZ010000003.1  169982965-169983087 c
            433-656             JAXUCZ010000003.1  169981719-169981942 c
            657-2440            JAXUCZ010000003.1  169979673-169981456 c
FEATURES             Location/Qualifiers
     source          1..2440
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..2440
                     /gene="Emilin3"
                     /note="elastin microfibril interfacer 3"
                     /db_xref="GeneID:362262"
                     /db_xref="RGD:1309607"
     exon            1..309
                     /gene="Emilin3"
                     /inference="alignment:Splign:2.1.0"
     CDS             146..2440
                     /gene="Emilin3"
                     /note="EMILIN-3"
                     /codon_start=1
                     /product="EMILIN-3 precursor"
                     /protein_id="NP_001103371.1"
                     /db_xref="GeneID:362262"
                     /db_xref="RGD:1309607"
                     /translation="MGRRLLVWLCAVAALLSGAQAKGTSLFARPAQPGASRYSLYTTG
                     WRPRLRPGPHKSLCAYVVHRNVTCVLQEGAESFVKAEYRNCGWGPNCPSTVRYRTVFR
                     PRYKIGYKAVTDLAWRCCPGLTGEGCPEHLEDHGATPPHQEPEPQIPLGQLGPGPRPS
                     PYSREAPHPRGRKGPGLFGEQLEQLEGGVRRLSQAYGTLSGLAASHEDPDRITGDPRT
                     PVVPVGFGVIPEGLADPEGRGRGPRIPPLSEILSKVTEVSNTLQTKVQLLDEVRGLAL
                     GHEAHLQRLREAPPSPLTSLALLEEYVDQRLQRLWGSLLDGFEQKLQGVQSECDLRVQ
                     EVRQQCEEGQAASQRLHQSLDGRELALRRELSQLGTQLQGLTLTGGGTCCSQLALISA
                     RVDSLERNLQAVTETQGGPSTLAADELARLSAAMLQGGVDGLLEGLETINRTENGARG
                     CCLRMEMGGWGVGGFGSTLEERVQSLEERLATLTGELKPKGAIPDRSVRPLVHSELAV
                     LEQRLVSLETSCTPSTTTAILDNLVAEVKAWQSRSEALLHQVARHTALLQQLNGTVAE
                     VQGQLAEGTGSSLQGEITLLKVNLNSVSKSLTGLSDSVSQYSDAFLAANTSLDERERR
                     VEAEVHAIQEQVSSQGSRLQAGHRQVLNLRGELEQLKAGVANVAGGLSRCRDTAQELQ
                     HTVSHFDQRVAQVEGAYERLGLLAAHLNSLPTEQLRSREGLWGHIDKLNHTLAQHTQD
                     IARLRDDLLDCRAQLAEVRPGRAD"
     exon            310..432
                     /gene="Emilin3"
                     /inference="alignment:Splign:2.1.0"
     exon            433..656
                     /gene="Emilin3"
                     /inference="alignment:Splign:2.1.0"
     exon            657..2440
                     /gene="Emilin3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cactcggcgg gacgcagcgg ccgcacagct ccaggcggcc gaacaagcgc gctccggggg
       61 tcgcgagagg cattaggagc cgggcgggcg agcggaggat cccctgcggg aggcaccccg
      121 aggggccgag tgacgaccga gagcgatggg ccgccgtctc ctcgtgtggc tgtgcgccgt
      181 cgcggcgctg ctctcggggg cgcaggccaa gggcacctcg ctcttcgcac ggcccgcgca
      241 gcccggcgcc tcccgctaca gcctctacac caccggatgg cgtccgcggc tgcgtccggg
      301 gccgcacaag tctctctgtg cctatgtggt acataggaat gtgacctgcg tcctacaaga
      361 aggagcagag agctttgtga aggctgagta ccggaattgt ggttgggggc ccaactgccc
      421 ctcaacagtc aggtaccgca cagtgttcag acccagatac aagatcggtt acaaggctgt
      481 gacagacctg gcctggcgct gctgccctgg tcttactggg gaaggctgcc cagaacacct
      541 cgaagaccac ggagccaccc caccacacca ggagccagag cctcagattc ccttggggca
      601 actgggccca ggtcccaggc cttctcctta cagcagagag gccccgcacc cccgtggaag
      661 aaagggccca ggactgtttg gtgagcagct agaacagctg gagggcggtg ttcggcgcct
      721 gtcacaagca tatggcactc tgagtggatt ggcggccagc cacgaggatc ccgataggat
      781 tactggtgac cccaggactc ctgttgtacc tgtaggcttt ggggtcatcc ctgaggggct
      841 tgcggaccca gaaggcagag gcagaggacc acgcatccct cctctgagtg aaatcctgag
      901 caaggtcaca gaggtgagca acacattaca gaccaaggtg cagctgttag atgaggtccg
      961 tgggctggcc ctggggcatg aggctcacct gcagcgacta cgggaagccc caccgtcccc
     1021 actgacctcc ttggcactgc tggaggagta cgtggaccag cggctgcagc gactctgggg
     1081 gagcctgctg gatggcttcg agcagaagct gcaaggtgtc cagagtgagt gtgaccttcg
     1141 ggtgcaagag gtgcggcagc agtgtgaaga gggccaggca gccagccagc gcctgcatca
     1201 gagcctcgat ggccgggagc tggccttgcg tcgggagctc tcacagctgg gtactcagct
     1261 gcagggcctg actctgaccg gtgggggtac ctgttgtagc caactggctt tgatcagcgc
     1321 ccgtgtggac agccttgaga ggaacctgca ggctgtcact gagacccaag ggggccccag
     1381 caccctggcc gcagacgagc ttgcacgcct ctctgcagct atgctccagg gaggcgtgga
     1441 cgggctgctt gaaggtctcg agactatcaa taggacagag aatggagcaa ggggctgctg
     1501 tctgagaatg gagatggggg gctggggtgt tggtggcttt gggtccaccc tggaagagcg
     1561 agtgcagagc ctagaggagc gactggcaac tctgactgga gagctaaaac ccaagggtgc
     1621 catcccagac agatcagtgc ggccgcttgt tcactcggaa ctagctgtgc tggaacaacg
     1681 gctggtgtcc ctggagacct catgcacccc aagtaccacc acagccatcc tggacaacct
     1741 tgtggcagaa gtgaaggcct ggcagagccg gagcgaagcc ctcctacacc aggtggcccg
     1801 tcacactgcc ctgctccaac agctcaatgg cacagtagct gaagtccagg ggcagctggc
     1861 agaagggaca ggcagctcac tccaaggtga gatcactctg ttgaaggtta acctgaactc
     1921 agtgagcaag tcactcacag gcctcagcga ctctgtcagc cagtactctg atgccttctt
     1981 ggccgccaac acatccctgg atgagcgaga acggagggtg gaagccgagg tccatgccat
     2041 ccaggaacaa gtgagcagcc agggctcaag gcttcaggct ggccacaggc aggtcctgaa
     2101 cctgcgaggg gagctggaac aactcaaggc tggtgtggcc aatgtggccg gagggttgag
     2161 tcgctgccgg gacacagccc aggaactcca gcatacagtg agccactttg accagagggt
     2221 ggcccaggtg gaaggagcct atgagaggct gggcctgtta gccgcccacc tgaacagttt
     2281 acctactgaa cagctgaggt ccagggaggg cctgtggggc cacatagaca agctgaacca
     2341 cacgttggcc cagcacacgc aggacattgc ccggctccgg gatgacctgt tggactgcag
     2401 agcccagctg gctgaggtga ggccagggcg agctgactag
//
