LOCUS       XM_017596881            4090 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus elastin microfibril interfacer 2
            (Emilin2), transcript variant X1, mRNA.
ACCESSION   XM_017596881
VERSION     XM_017596881.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017596881.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017596881.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4090
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4090
                     /gene="Emilin2"
                     /note="elastin microfibril interfacer 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 229 ESTs, 2 long SRA reads, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 100 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:316736"
                     /db_xref="RGD:1305343"
     CDS             282..3509
                     /gene="Emilin2"
                     /codon_start=1
                     /product="EMILIN-2 isoform X1"
                     /protein_id="XP_017452370.2"
                     /db_xref="GeneID:316736"
                     /db_xref="RGD:1305343"
                     /translation="MCQETPPRPRAPSRWTPALLALLALGGAGLCHASSQPGYHARPS
                     ARNKNWCAYIVNKNVSCTVQEGSESFIQAQYNCPWNQMPCPSALVYRVNFRPRFVTRY
                     KIVTQLEWRCCPGFRGADCQEGPKDAMKTPRTPPVRPRNNLKKATDTDPSQVSQPKKT
                     LSPTNATEPGQVADPKQGPPEFQQTKVQVLEEKVVRLTRMVLDLQSSVSGLKENLKHT
                     IQDDGSKEPASWLGPLHPQPTPDGTFAGDAEPSQLPGILNSKESGMKDIKSELAEVKD
                     TLKTKSDKLEELDGKVKGYEGQLKQLQEAAQGPTVTMTTNELFQAYVDSKIDALREEL
                     MEGMDRKLADLKNTCEYKLVGLQQQCDDYGSSYLGVIELIGEKEASLKKDIADLRARL
                     QDPTAQPSCCDGQKNGDFGPQIKTLDQKIERVAEATRMLNGRLDNEFDRLSFPEPDAD
                     FDARWNELDARINVTEKNAEEHCFYIEETLRGAINGEVDDLRKLLNEKIHSLEDRLGI
                     ILQVTNGSDLELTPVGPALSGQPGQPGQPGAENEQLLRELSRLKDKVQVVEDICLQSL
                     PHGIDGALPSGEDLTHVGLSLLESLNDTMHRQFQETSHSIQKLQEDFSALYSQLNHSE
                     YTGTRLPNGVSDSMEASGFTKTGEQERTVGTVPSPGGPVAPCCGQLEERWQRLQNQVL
                     AELDTCKESAHGVQSGVSAVEGRVSQLEKTCSRLDAISGSLQRIKEGLGKHVGSLWNC
                     VRQMNGTLRSHSRDISGLKNSVQQFYSHVFQISTDLQDLVKFQPSATEEPLEATQGPS
                     GKTPLESTRPLEEAPTEPPRLTPLPEHPAGPPQIGQRPVLPQRPLQPPPLPAWPGRMG
                     LPVLPGSSGVIMETGEAGPPGRMGMSGRGLPQGVDGQMGQGPIPSSEGYAGAPGYPKS
                     PPVATPGVSLPALVSFSAGLTQKPFPSDGGVVLFNKVLVNDGDVYNPSTGIFTAPYDG
                     RYLITATLTPERDAYVEAVLSVSNASVAQLHTAGYRREFLEYHRPPGAVHTCGGPGAF
                     HLIVHLKAGDGVNVVVTGGRLAHTDFDEMYSTFSGVFLYPFLSHL"
ORIGIN      
        1 ggaaaatctg taaccgagac ccggttccta accctttggc tctttccccc cgagccccct
       61 gtggagaggc aaagggccga gagatggtga agggaagagt cacgtttcgg agagggaagt
      121 gaaataaaga gggcggcacc cggggggacc tgtgcgtcat tgagggacct cggagcggcc
      181 agtgcggagg cgtgggggca aggagccaga ggggccgcca agcacccgag tccgctgccc
      241 gttcccgcgg ccccgcagtc tgcagccttg tggggctcaa gatgtgtcag gagaccccgc
      301 cccgaccccg agcacccagc cgctggacgc cggccctgct ggccctgctg gccctgggcg
      361 gcgcgggact atgccacgcg agctcgcagc ctgggtacca cgcgcggccc agtgctagga
      421 acaagaactg gtgcgcctac atcgtgaata agaacgtaag ctgcacggtg caggagggaa
      481 gcgagagttt tattcaggct cagtacaact gtccctggaa ccagatgccc tgtccatccg
      541 ctctggtgta tagggtaaac ttcagaccca gatttgtcac taggtacaag atagtgacac
      601 agttggaatg gagatgctgt ccaggcttta gaggagcaga ctgccaagaa ggtcccaaag
      661 acgccatgaa gactccccgg actccaccag ttcgaccaag aaacaacctg aagaaagcca
      721 cagacactga tccaagccaa gtctcacagc ctaagaaaac tttgtcacca acaaatgcaa
      781 cagaaccagg ccaggttgca gatccaaagc aaggtcctcc agaatttcag caaaccaaag
      841 tccaggtgct ggaggagaag gttgtccgac tcaccaggat ggtgctagat ctccagtcgt
      901 ctgtgtcagg cctgaaggag aacctcaaac acaccatcca agacgatggc agcaaagagc
      961 cagcctcctg gctcggtccc ctgcacccac agccaacccc tgatggcacc ttcgcggggg
     1021 acgcagagcc gagccagctt cccggaatcc tcaacagcaa ggaatctggc atgaaggaca
     1081 tcaagtctga gctggctgag gtcaaagaca cattgaagac caagagtgac aagctagaag
     1141 agctggatgg gaaggtgaag ggctatgaag ggcagctcaa gcagctgcag gaggctgctc
     1201 agggccccac agtcaccatg acaaccaacg agctgttcca agcctatgtg gatagcaaga
     1261 tagatgccct gagagaggag ctcatggagg gcatggaccg gaagctggct gacctgaaga
     1321 acacgtgcga gtacaagttg gtgggtctcc agcagcagtg tgatgactat ggcagcagct
     1381 acctcggcgt gatagagctg atcggagaga aggaggcgag cctgaaaaag gacatcgcgg
     1441 acctccgagc acggctgcag gaccccacag cccaaccaag ctgctgcgac ggtcaaaaga
     1501 acggcgattt tggcccacag atcaagacac tagatcagaa aattgagaga gttgccgagg
     1561 ccactaggat gctgaatgga cggctggaca atgaattcga ccgcctctcc tttccagagc
     1621 cagacgcaga ctttgatgcg agatggaacg agctggacgc aaggatcaac gtgacggaga
     1681 agaacgcaga agagcattgc ttttacatcg aggagactct gcggggggcc atcaacggcg
     1741 aagtggatga cttgaggaag cttctcaatg agaaaatcca ctccctggaa gaccgtctgg
     1801 gaatcatttt gcaagtgacc aacggctctg atttggagtt gacacctgtg ggcccagcct
     1861 tgtcaggaca gccagggcag ccagggcagc caggggcaga gaatgagcaa ctcctaaggg
     1921 agttgagccg cctgaaggac aaagttcaag tggttgagga catctgcctg cagagcttgc
     1981 cccatgggat agatggagct ttgcctagtg gagaagacct cacacatgtt ggcctgagcc
     2041 ttttggaatc ccttaacgat acgatgcaca ggcagttcca agaaacaagc cacagcatcc
     2101 agaaacttca agaggacttc agtgcccttt attctcaact aaatcactca gaatatacag
     2161 ggactcgctt gccaaatgga gtgagtgaca gcatggaagc aagtgggttt actaagacag
     2221 gggagcaaga gaggaccgtg gggactgtcc cgtctcctgg gggccctgtg gctccatgct
     2281 gtggccagct ggaggagcgc tggcagaggc tgcagaacca agtgctggct gagctagaca
     2341 catgcaagga gagcgctcac ggggttcaaa gcggggtgtc tgcggtcgag ggcagggtgt
     2401 cccagctgga gaagacgtgc agcaggttgg acgccatctc agggagtctg cagaggatca
     2461 aggaggggct cgggaagcat gtgggcagcc tgtggaactg tgtccggcag atgaacggga
     2521 cactcaggtc acactccaga gacatctctg gcctcaagaa ttctgtgcag caattctaca
     2581 gtcacgtctt ccagatttct actgacttgc aggatctggt caagtttcag ccatcagcaa
     2641 cagaggaacc cttggaagca actcagggac catctgggaa gaccccacta gaatccacca
     2701 gacccttgga ggaggccccc actgagccac cgcggctgac cccactgcca gaacaccctg
     2761 ccggaccacc acagataggc cagcggccag tattgcccca gaggcccctg cagccaccac
     2821 ctttgcctgc ctggcctggt cgcatggggt tgcccgtcct gcctggctcc agtggagtca
     2881 tcatggagac tggagaggct gggcctccag gcaggatggg catgtccgga aggggcctgc
     2941 ctcagggagt ggatggacag atggggcagg ggccgattcc tagctcggaa ggctacgcag
     3001 gcgcaccagg ctaccccaag tcacctcctg tagccacccc aggggtgtcg ctgcctgctc
     3061 tggtgtcctt ttcagctggt cttacccaga agccttttcc cagtgatgga ggtgtcgtcc
     3121 tctttaataa ggtgctggtg aatgatgggg atgtatacaa ccccagcact gggatcttca
     3181 cggcaccgta tgatgggcgc tacctgatca cggccaccct caccccggag agggatgcct
     3241 acgtggaagc ggtcctgtct gtttccaacg ccagtgttgc ccagctccat acggctgggt
     3301 ataggagaga gttcctggaa taccatcgtc cccctggggc tgtgcatacc tgcgggggcc
     3361 caggggcctt ccacctcatc gtgcacctga aggcaggaga tggagtcaac gttgtggtga
     3421 ctgggggcag attggctcac acagactttg atgaaatgta ctccaccttt agtggcgttt
     3481 tcttgtatcc gttcctttcc cacctttagg gaggccagga ggggaagagg ctgtaaaaac
     3541 tccagagctt ttaatatatt tggtttctgt agtttgctgc acacactctg cctgcctcca
     3601 ggataaaagc cctcacctcc ctgtagagac ggacacctct cgtttccaga cagctgtgga
     3661 ggcaacacat ggttcaattc tgtcactgta actggacaac cagaagattt gtcaagtccc
     3721 ctttgctgga agctggcttc tcctgtgctg cctatatgcc gccagttctg ccagaggctt
     3781 ctgggttggg ccccttcggt gctacagtgg aggcccatgc tgctccctga ctgggctggg
     3841 cctgatgcag ctggaagaca ctgtagcgga cgcgtcctcc acactgcatg tagaagactt
     3901 aaacactgaa gtgctgatgt ggcctggacc cagagttagc ctgggttgtt ccacacttgg
     3961 ctgctggtac tgatctctgc taccaaggtg gatgtaagag acattattta tgaggcttgc
     4021 cgggctcctt aaatgacatg tacgatataa gtgcaaagac agggagcatc aataaagatg
     4081 tcagaatcac
//
