LOCUS       NM_001401947            1201 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus essential meiotic structure-specific endonuclease
            subunit 2 (Eme2), transcript variant 1, mRNA.
ACCESSION   NM_001401947 XM_008767605
VERSION     NM_001401947.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1201)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Mar 3, 2022 this sequence version replaced XM_008767605.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.116841.1,
                                           SRR26643429.35722.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-252               JAXUCZ010000010.1  14420238-14420489   c
            253-389             JAXUCZ010000010.1  14419987-14420123   c
            390-482             JAXUCZ010000010.1  14419545-14419637   c
            483-574             JAXUCZ010000010.1  14418830-14418921   c
            575-668             JAXUCZ010000010.1  14418585-14418678   c
            669-784             JAXUCZ010000010.1  14418319-14418434   c
            785-974             JAXUCZ010000010.1  14418034-14418223   c
            975-1201            JAXUCZ010000010.1  14417735-14417961   c
FEATURES             Location/Qualifiers
     source          1..1201
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..1201
                     /gene="Eme2"
                     /gene_synonym="RGD1304924"
                     /note="essential meiotic structure-specific endonuclease
                     subunit 2"
                     /db_xref="GeneID:302982"
                     /db_xref="RGD:1304924"
     exon            1..252
                     /gene="Eme2"
                     /gene_synonym="RGD1304924"
                     /inference="alignment:Splign:2.1.0"
     CDS             18..1145
                     /gene="Eme2"
                     /gene_synonym="RGD1304924"
                     /note="isoform 1 is encoded by transcript variant 1;
                     probable crossover junction endonuclease EME2; essential
                     meiotic endonuclease 1 homolog 2"
                     /codon_start=1
                     /product="probable crossover junction endonuclease EME2
                     isoform 1"
                     /protein_id="NP_001388876.1"
                     /db_xref="GeneID:302982"
                     /db_xref="RGD:1304924"
                     /translation="MAEVGPERVPGSHRGRGRGPRLGHRRPQTWEISDSDAEGAPARE
                     VGTPARSSVGERRAAAKALRADQVLERLVVCVDPAVLEDAGSDILMEALGTLGCECRI
                     EPQHQARSLQWSVVRPDPALSNVPQEGKAENEQEQLLLLEPQEFLQGAVQLTQMTDPP
                     CSVPWLSPESPTRSHLAVIGLDAYLCSCKPSSQKTWPPKKSEEAQARVAISWSEVEEA
                     LVLLQLHANLDVLLVASWRELSQYVCAFTKALAQLPSKRFRDSQAFSFCTAGHWASGQ
                     QVTRDGSGLRGVWWRQIRQFNRVSPAVADAVVTAFPSPRLLQQALLDCSTEQERLSLL
                     ADLPVKAPGGKQPRRVGPDLSRRICIFLTTTNPDILLDLSS"
     exon            253..389
                     /gene="Eme2"
                     /gene_synonym="RGD1304924"
                     /inference="alignment:Splign:2.1.0"
     exon            390..482
                     /gene="Eme2"
                     /gene_synonym="RGD1304924"
                     /inference="alignment:Splign:2.1.0"
     exon            483..574
                     /gene="Eme2"
                     /gene_synonym="RGD1304924"
                     /inference="alignment:Splign:2.1.0"
     exon            575..668
                     /gene="Eme2"
                     /gene_synonym="RGD1304924"
                     /inference="alignment:Splign:2.1.0"
     exon            669..784
                     /gene="Eme2"
                     /gene_synonym="RGD1304924"
                     /inference="alignment:Splign:2.1.0"
     exon            785..974
                     /gene="Eme2"
                     /gene_synonym="RGD1304924"
                     /inference="alignment:Splign:2.1.0"
     exon            975..1201
                     /gene="Eme2"
                     /gene_synonym="RGD1304924"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtaggaagga tgggtttatg gcggaggtgg gacctgagag agtcccgggc tcccatcgcg
       61 gtcggggccg gggcccgcgc ctcggccatc ggcgacctca gacctgggag atttccgact
      121 cagacgccga aggtgcccct gctagagaag tcggcacgcc agcccggagt tcagtaggag
      181 agcgaagagc tgcggccaag gctttacggg cagatcaggt cctggagcgt ctggtggtgt
      241 gcgtggaccc agctgtgctg gaagatgcag gctccgacat cctgatggag gcgctgggta
      301 cactaggctg tgaatgccgc attgagccgc agcaccaggc ccgcagccta cagtggagcg
      361 ttgtgaggcc cgacccggcc ctcagcaatg tgcctcagga ggggaaggct gaaaatgagc
      421 aggaacagtt gctgctgctg gaaccccagg aatttcttca gggtgctgtg cagctgaccc
      481 agatgacaga cccaccttgc tccgtcccct ggctttctcc cgagagtccc acccgctccc
      541 atctggcggt catcggactg gatgcgtacc tgtgttcttg caagcccagt tctcagaaga
      601 cgtggccacc aaagaagtca gaggaagccc aggccagggt agccatcagc tggtcagagg
      661 tggaggaggc tctggtactg cttcagctcc atgcaaactt ggatgtgctg ctggtagcct
      721 cgtggcgaga gctgagtcag tatgtgtgtg ccttcaccaa ggccctcgcc cagctcccct
      781 ctaagcggtt ccgggactcc caggcctttt ctttctgtac agcagggcac tgggcctcag
      841 gccagcaagt gaccagagat ggctctgggc tcagaggagt gtggtggcga caaatcagac
      901 agttcaaccg ggtcagccca gctgtggctg atgctgttgt tactgccttc ccctcacccc
      961 gccttttgca acaggctcta ctggactgca gcacagagca ggagcgcctg agcctcctag
     1021 ctgacctccc tgtgaaggcc cctgggggca agcagcctcg cagagtgggg cctgacctct
     1081 ctcgaagaat ctgtatcttc ttgaccacca ccaaccctga catcctgctg gacctgagct
     1141 cttgaccgca ccttgggtcg cctcctgccc atcaatacaa caagacaggc ctgcccaaga
     1201 a
//
