LOCUS       XM_039085463            1304 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus elongator acetyltransferase complex
            subunit 5 (Elp5), transcript variant X2, mRNA.
ACCESSION   XM_039085463
VERSION     XM_039085463.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039085463.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1304
                     /gene="Elp5"
                     /gene_synonym="DERP6; Rai12"
                     /note="elongator acetyltransferase complex subunit 5;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 9 ESTs, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 86 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:287446"
                     /db_xref="RGD:1303303"
     CDS             376..915
                     /gene="Elp5"
                     /gene_synonym="DERP6; Rai12"
                     /codon_start=1
                     /product="elongator complex protein 5 isoform X2"
                     /protein_id="XP_038941391.1"
                     /db_xref="GeneID:287446"
                     /db_xref="RGD:1303303"
                     /translation="MPRLLSGDDIRRRPEASEMLDSLLATGGLVLLRDSVEWEGRGLL
                     KALIKKSALRGEQVHVLGCEVSEEEFREGLGSDVNSRLVYHDLFRDPLNWSQPGEAAP
                     EGPLKALRSMCRRTDRGSVTIALDSLSWLLCHIPCVTLCQALHALSQRNVDPGAGSVF
                     EGFLESRTSASTARALAYT"
ORIGIN      
        1 aagcagtgct ctgaccaagg atgcagcgtt acgcacgcgc acaaggttac tgcggggcgg
       61 gacctgggga gaagcccgga acgatgtggg cgtggctgag ttacgtcatt tattcccagg
      121 ttcggacctt cttggggatt ggatctcgtg cgacctctat ccttgtcccc atcccactga
      181 taactgttcc aacggccttt ctcgccccag tcatggtgca agaacagatt aaggatgtcg
      241 tctctaggac tgtgtacaga ggctcaggag cggcccctcc gagtaagcct tctgagaata
      301 ctgaacataa aaaaagaaga aaacagggtc tgcgttccgg actttgcggt cctttaaggt
      361 tggacgcaat cctcaatgcc ccgcctcctt agtggtgacg acatcagaag gcgtcctgag
      421 gcgtcagaga tgctggactc gttgttggcc accggtggtt tggtgcttct tcgagattcc
      481 gtggagtggg aggggcgtgg tctcctgaag gctcttatca agaaatctgc acttcgtggg
      541 gagcaagtcc acgttctggg ctgtgaggtg agtgaagaag agtttcgcga aggtctcggc
      601 tctgatgtca acagccgcct agtttaccat gacctcttca gagaccctct gaactggtca
      661 caacctgggg aagctgctcc tgaaggacct ctaaaagcct tgagatccat gtgcagaagg
      721 acagaccgtg gctctgtcac catcgccctt gactctctca gctggctgct atgtcacatt
      781 ccctgtgtta cactctgtca agccctacat gctctgagcc agcgaaatgt agacccaggt
      841 gcagggtctg ttttcgaggg ttttctggaa tcgagaacat ctgcctccac tgctagagct
      901 ctagcataca cctaaattaa gagagctgtg aggattttgt ttggattaca tttttttgtg
      961 tgattcttgt ctgcacatac ttctgtgcac cgtgcgcttg cctggtggag gatgtgcagg
     1021 gtctggctgg gcagagagga tggtccaccc tgagcgtctg atctgctttt gcctcctggc
     1081 tgagtacagg cctgtacttc catgcagtgt acagggcgct aaggctggag gccaggggtg
     1141 atgtgagcca ggcagctgtg ctcaatagct cattcctcct ttaacaagta taacaagtgc
     1201 atcatcaggt acaattttaa ataatggaaa agcaaaggct gacctttcag gtcataaaaa
     1261 atataaaaaa gtaaatggct ggaaataaat tccacactta caaa
//
