LOCUS       XM_039094878            1422 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus elongin-A2-like 1 (EloaA2l1), mRNA.
ACCESSION   XM_039094878
VERSION     XM_039094878.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-342               JACYVU010000274.1  2853770-2854111
            343-420             JACYVU010000274.1  2854217-2854294
            421-1197            JACYVU010000274.1  2854527-2855303
            1198-1422           JACYVU010000274.1  2855305-2855529
FEATURES             Location/Qualifiers
     source          1..1422
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1422
                     /gene="EloaA2l1"
                     /note="elongin-A2-like 1; The sequence of the model RefSeq
                     transcript was modified relative to its source genomic
                     sequence to represent the inferred CDS: deleted 1 base in
                     1 codon; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 36% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120097366"
                     /db_xref="RGD:41048724"
     CDS             1..1422
                     /gene="EloaA2l1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: elongin-A2-like"
                     /protein_id="XP_038950806.1"
                     /db_xref="GeneID:120097366"
                     /db_xref="RGD:41048724"
                     /translation="MEPGSQAGALQEILDCLCRESDPGKIYKTLKKLSSVPILCDSLA
                     EIGFRKTIKTLKNQQLLLPFVKDLVDKWSPGFVLGPQQEQDSLDFGLLRSHRTAHQST
                     GLEETNQEQIFQTPRSPSLDPAENRSSEQQPAVRDPGQVPPPCKRKSELPWLEEARRP
                     PAKILRGDSQVSKVQSPMADCASPDSRCSGKTCLAVDGVPQPSSSQLDGEASPRGWYL
                     RKNNKTPVYSGCLPADSCPQESHPGLLGKPSAGIRNASLGQSAQEETEPGQSKEKTQC
                     QTQTSKQRPSLTKPSAHLCLQESQEERLQALRARIQSSMAKRLQGRQTTMISFHTQHK
                     SPGQQGELGPRRGDTVPTSHSLPEAPAHPGSQKLSCLPSGAKGPKKAPAKRPAPLMAK
                     ALRDYSRGSTQTEWLMLSTVTIPATPGTGKDWAYTLSPGRTGTEHTVVVKFQTHSTAP
                     FSGVFTVPLDKIFQPEPLSHGKL"
ORIGIN      
        1 atggaaccag gctctcaggc aggcgccctg caggagatcc tggactgtct gtgtcgagag
       61 agcgacccag gaaagatcta caaaacactg aagaaactgt cttctgtgcc tatcctgtgc
      121 gacagcctgg cagagattgg cttcagaaag accataaaga cgttgaagaa tcagcagctc
      181 ctgctcccct ttgttaagga cctagtagac aagtggtcac cggggttcgt gcttggaccc
      241 caacaagagc aagactccct ggactttgga ttgctgagga gccacaggac agcgcatcag
      301 agcactggtc tagaagagac aaaccaggag caaatattcc agacgcccag gagtccaagc
      361 ctggatccag cagaaaacag gagctctgag cagcagccag ctgtccggga cccagggcag
      421 gtcccaccac catgcaagag gaagagtgaa ctcccctggc ttgaggaagc tcggaggcct
      481 cccgcaaaga ttcttcgagg tgattctcaa gtatccaagg tccagagtcc catggctgac
      541 tgtgctagcc cagactctcg ttgcagtggt aaaacctgcc ttgctgtgga tggtgtcccg
      601 cagccttctt cctctcagct ggatggagaa gcgtcaccta ggggctggta tctcagaaag
      661 aacaacaaaa cgccagtcta ttcaggttgt cttccagcag actcttgtcc tcaggaatcc
      721 cacccagggc tccttgggaa gccctcggct ggcatcagga atgctagtct cggacaatcg
      781 gcccaagaag aaactgagcc tgggcagtcc aaggagaaga cacagtgcca gacgcagact
      841 agcaagcaaa gaccgagctt gactaagccc tctgcacacc tgtgtcttca ggagtcccaa
      901 gaggagaggc tgcaggccct cagagcccgc atccaaagct caatggccaa gaggctgcaa
      961 gggagacaga caaccatgat ctccttccat acccagcaca agagcccagg tcaacaaggg
     1021 gagcttggac ccagaagggg tgatacagta ccaacttccc acagtcttcc tgaggcacct
     1081 gcccatccag gatcccagaa gctttcctgc ctgccctctg gagcaaaagg ccccaaaaag
     1141 gcgccagcta agagacctgc tccactcatg gccaaggcac tcagggacta cagccgtggt
     1201 tctacacaaa ctgaatggct gatgctctcc acagtcacaa tacctgccac tcctgggact
     1261 gggaaggact gggcatacac tctttctcct ggaagaactg gcacagaaca cactgtggtt
     1321 gtcaagttcc agacacactc cactgcaccc ttttctggag ttttcactgt gcctctggac
     1381 aagattttcc aacctgaacc cttgtcccat ggcaagttgt aa
//
